BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09740.1 Length=1292 Score E Sequences producing significant alignments: (Bits) Value Ahg928651 jgi|Araly1|928651|scaffold_301108.1 1690 0.0 > Ahg928651 jgi|Araly1|928651|scaffold_301108.1 Length=1020 Score = 1690 bits (915), Expect = 0.0 Identities = 986/1021 (97%), Gaps = 2/1021 (0%) Strand=Plus/Plus Query 84 ATTCAAAATTTCACAAATTAAAGTCTTCTTCCTCTCCGAATCAGAGATTGTCTCCTTC-T 142 |||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| | Sbjct 1 ATTC-AAATTTCACAAAATAAAGTCTTCTTCCTCTTCGAATCAGAGATTTTCTCCTTCTT 59 Query 143 TAGCTCAGATCTGGGAGCTTCTTGTGATAGATTTGGAAGAAGATGACTGTGATCGATATT 202 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 60 TAGCTCAGATCTGGGAGCTTCTGGTGATTGATTTGGAAGAAGATGACTGTGATCGATATT 119 Query 203 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGG 262 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGT 179 Query 263 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 239 Query 323 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAACAGGGCTGCTGCT 382 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 240 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAATAGAGCTGCTGCT 299 Query 383 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAG 442 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 300 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCTCGATTGTCAGAGGAAGTTCCCAAG 359 Query 443 TTGCAAAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 502 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTGCAGAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 419 Query 503 AATGATTTGGTGCTCGCTCTTCCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 562 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 420 AATGATTTAGTGCTCGCTCTACCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 479 Query 563 GGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 622 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGCCCTAAAAACACTAGTGGTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 539 Query 623 TTTGATTCAGATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAA 682 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 540 TTTGATTCAGATGGGCGTTTTGATGATGATTACTTTCAAGAATCACATGAATCTAGCCAA 599 Query 683 TTCAGGCAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCC 742 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTCAGACAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCT 659 Query 743 GAAGGGTTAGATGCTTTGAAGAACATGGCTTCTGATATGAACGAGGAACTGGATAGACAA 802 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 660 GAAGGGTTAGATGCTTTGAAGAACATGGCGTCTGATATGAACGAGGAACTGGATAGACAA 719 Query 803 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCCGATCTTAAGAAC 862 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 720 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCGGATCTTAAAAAC 779 Query 863 ACCAATGTTAGACTTAAAGATACCGTGAACCAGCTGAGATCTAGCCGGAACTTCTGTATC 922 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 780 ACCAATGTCAGACTTAAAGATACCGTGAACCAGCTGAGATCAAGCCGGAACTTCTGTATC 839 Query 923 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 899 Query 983 TAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGT 1042 | ||||||||||| | ||||||||||||| ||||||||||||||||||||| | |||||| Sbjct 900 TGATGAGATGAACACGACGAAAGGACCCAGTAGTACTTATCACCCGAGTCAGTGTCCAGT 959 Query 1043 GTGTGCTTGTGTCTTACTCTTCTTCTCTGATATTTCTACGAGAGTTTCTTCTTAATGTCA 1102 |||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||| Sbjct 960 GTGTGCTTGTGTCTTAATCTTCTACTCTGATATTTCTGCGAGAGTTTCTTCCTAATGTCA 1019 Query 1103 A 1103 | Sbjct 1020 A 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48301735839 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5