BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09810.1 Length=1551 Score E Sequences producing significant alignments: (Bits) Value Ahg928658 jgi|Araly1|928658|scaffold_301115.1 1975 0.0 Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1 1179 0.0 > Ahg928658 jgi|Araly1|928658|scaffold_301115.1 Length=1160 Score = 1975 bits (1069), Expect = 0.0 Identities = 1130/1160 (97%), Gaps = 1/1160 (0%) Strand=Plus/Plus Query 47 GAGGCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTATCGGTAACGGATC 106 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 2 GAGGCTGGAAGCGATGACCATGGCAGCATTTCTCGCGAGACGGCTTATTGGTAACCGATC 61 Query 107 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTCCGTTCATTTCCGTTTCTAGGGC 166 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 62 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTGCGTTCATTTCCGTTTCTAGGGC 121 Query 167 TTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTTCCCGGTGATGGGATCGGTCC 226 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 122 TTTCTTCTCCTCCACCACTCCGATCAAAGCAACTCTCTTTCCCGGTGATGGGATCGGTCC 181 Query 227 CGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGCTGATGTGGTTATTGATTGGGA 286 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 182 CGAAATCGCTGAATCTGTCAAACAGGTGTTTACTGCCGCTGATGTGACCATTGATTGGGA 241 Query 287 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACATGGGATAA 346 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 242 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACTTGGGAAAA 301 Query 347 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCTACTCCAATTGG 406 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 302 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCAACGCCAATTGG 361 Query 407 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 421 Query 467 TAGGCCTTGTTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 526 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TAGGCCTTGCTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 481 Query 527 CATTCGTGAGAACACTGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 586 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 CATTCGTGAAAACACCGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 541 Query 587 AGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCCGAGTATGCCTT 646 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 542 GGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCTGAGTATGCCTT 601 Query 647 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCTGCAATTCACAAAGCCAACATTAT 706 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 602 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCAGCAATTCATAAAGCCAACATTAT 661 Query 707 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAAGTTGCTGCGAAGTATCCTGA 766 ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 662 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAGGTTGCTAAGAAGTATCCTGA 721 Query 767 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 781 Query 827 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 841 Query 887 TGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 946 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 901 Query 947 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAATGAACCTGGCGAACCC 1006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 902 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAAAGAACCTGGCGAACCC 961 Query 1007 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1021 Query 1067 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1081 Query 1127 TCTCGGAGGTTCCTCAACTACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1186 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 TCTCGGAGGTACCTCAACCACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1141 Query 1187 ACCCGTGAAAAACCATAATT 1206 |||||| |||||||| |||| Sbjct 1142 ACCCGT-AAAAACCAGAATT 1160 > Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1 Length=1425 Score = 1179 bits (638), Expect = 0.0 Identities = 1003/1175 (85%), Gaps = 41/1175 (3%) Strand=Plus/Plus Query 35 ctGCGTCCTTCTGAG-GCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTA 93 ||||||||||||| | ||| |||| |||||||||| ||||| ||||||| ||||||| | Sbjct 35 CTGCGTCCTTCTG-GTGCTTGAAGAGATGACCATGGCAGCAAATCTCGCGCGACGGCTGA 93 Query 94 TC---GGTAACGGATCGAGC-CAGATTCTCGG-GACT-TCGAGTTCTAGCTCCGGT-CCG 146 || || ||| |||||| | ||||| || || | || | || |||||||| ||| | | Sbjct 94 TCGGAGGAAACCGATCGA-CTCAGATCCTTGGTG-CTGT-GAACTCTAGCTCAGGTGCGG 150 Query 147 TTCATTTCCGTTTCTAGGGCTTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTT 206 | | |||||| |||||||||||| ||||||| |||||||||||| || |||||| || Sbjct 151 CT-ACTTCCGTCGCTAGGGCTTTCTGCTCCTCCACCACTCCGATCACCGCAACTCTC-TT 208 Query 207 CCC-GGTGATGGGATCGGTCCCGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGC 265 ||| |||||||||||||||||||| ||||| ||||||||||| |||||||||| | || Sbjct 209 CCCTGGTGATGGGATCGGTCCCGAGATCGCCGAATCTGTCAAAAAGGTGTTTACAACTGC 268 Query 266 TGATGTGGTTATTGATTGGGACGAACAGTTTGTTGGTACTGAAG-TAGATCCTAGAACCA 324 || |||| ||||| ||||| ||||| | |||||| |||| || ||||||| |||| || Sbjct 269 TGGTGTGCCAATTGAGTGGGAAGAACACTATGTTGGGACTG-AGATAGATCCGAGAA-CA 326 Query 325 -ATAGTTTCTTGACATGGGATAA-TCTTC-AATCTGTGCTTAAAAACAAGGTTGGTTTGA 381 | ||||||||||||||||| || || || ||||||||| || |||||| |||||||||| Sbjct 327 CAGAGTTTCTTGACATGGGA-AAGTC-TCGAATCTGTGCGTAGAAACAAAGTTGGTTTGA 384 Query 382 AAGGACCAATGGCTACTCCAATT-GGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGG 440 |||| |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| Sbjct 385 AAGGTCCAATGGCTACTCCAATTGGGAAA-GGTCACCGTTCTTTGAACCTGACTCTTAGG 443 Query 441 AAAGAGCTGAATTTGTATGCCAATGTTAGGCCTTGTTACAGTCTTCCTGGTTACAAAACC 500 |||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 444 AAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTTACAGTCTTCCTGGTTACAAAACT 503 Query 501 CGTTATGATGATGTTGATCTCATTACCATTC-GTGAGAACACTGAAGGAGAGTACAGTGG 559 ||||| ||||| |||||||||||||||| || | || ||||| |||||||| |||||||| Sbjct 504 CGTTACGATGACGTTGATCTCATTACCA-TCAGAGAAAACACGGAAGGAGAATACAGTGG 562 Query 560 GCTTGAACACCAGGTCGTCAAG-GGTGTAGTGGAAAGTCTTAAAATTATTACCCGTAAGG 618 |||||||| ||||| || || ||||| || |||||||||||| | ||||||||| ||| Sbjct 563 CCTTGAACATCAGGTTGT-TAGAGGTGTGGTTGAAAGTCTTAAAGTCATTACCCGTCAGG 621 Query 619 CGAGTATGAGAGTTGCCGAGTATGCCTTTCTTTATGCCAAGACTCACGGAAGGA-AGAAA 677 ||||| |||||||||| |||||||| ||||| |||||||||||||| |||| || ||| | Sbjct 622 CGAGTTTGAGAGTTGCAGAGTATGCGTTTCTCTATGCCAAGACTCATGGAA-GAGAGAGA 680 Query 678 GTTTCTGCAATTCACAAAGCCAACATTATGCAGAAAACTGATGGTCTTTTCCTGC-AGTG 736 |||||||| || ||||||||||||||||||||||||||||| |||||||| || | |||| Sbjct 681 GTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTGACGGTCTTTTTCT-CAAGTG 739 Query 737 TTGT-GATGAAGTTGCTGCGAAGTATCCTGAGATATA-TTACGAGAAGGTTGTTATTGAC 794 |||| | ||| ||||||| |||||||||||||||| | ||||||| |||| ||||||||| Sbjct 740 TTGTCG-TGAGGTTGCTGAGAAGTATCCTGAGATA-ACTTACGAGGAGGTCGTTATTGAC 797 Query 795 AATTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAT 854 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 798 AACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAC 857 Query 855 CTCTATGGAGATATTATCAGCGATTTGTGTGCTGGACTTG-TTGGGGGACTAGGACTGAC 913 || || || || ||||| || ||| ||||||| ||| ||| |||| ||||||||| |||| Sbjct 858 CTGTACGGTGACATTATTAGTGATCTGTGTGCCGGA-TTGGTTGGAGGACTAGGATTGAC 916 Query 914 TCCTAGTATG-AATATTGGGGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTG 972 ||| ||| || ||||| || || ||||| | |||||||||||||| |||||||| |||| Sbjct 917 TCCAAGT-TGTAATATCGGAGAAGATGGCGTAGCCCTTGCTGAAGCAGTTCACGGTTCTG 975 Query 973 CACCTGATATTGCTGGAATGAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGA 1032 |||||||||| ||||||| |||| ||||||||||||| || ||||| ||||||||||||| Sbjct 976 CACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGCTTCTGAGTGGAGTGA 1035 Query 1033 TGATGTTGCGGCACCTGAAGCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCA 1092 |||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||| Sbjct 1036 TGATGTTGCGTCACCTGAAGCTCAACGAACAAGCAGAACAAATCCACAGTGCAATCATCA 1095 Query 1093 ACACAATAGCCGAGGGAAAGTATAGAACTGCTGATCTCGGAGGTTCCTCAACTACAACAG 1152 |||| ||||| |||||||| || ||||| || ||||| |||||| || || || || | Sbjct 1096 ACACCATAGCAGAGGGAAAATACAGAACCGCGGATCTTGGAGGTAGTTCGACCACCACGG 1155 Query 1153 ATTTCACAAAAGCCATCTGTGATCATCTCTAAACA 1187 | |||||||| || |||||||||||||||| |||| Sbjct 1156 AATTCACAAAGGCAATCTGTGATCATCTCTGAACA 1190 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58087623625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5