BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09850.1 Length=2641 Score E Sequences producing significant alignments: (Bits) Value Ahg478310 jgi|Araly1|478310|fgenesh2_kg.3__1011__AT3G09850.1 3958 0.0 > Ahg478310 jgi|Araly1|478310|fgenesh2_kg.3__1011__AT3G09850.1 Length=2594 Score = 3958 bits (2143), Expect = 0.0 Identities = 2461/2613 (94%), Gaps = 27/2613 (1%) Strand=Plus/Plus Query 5 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTCGATTCATCGTC 64 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTTGATTCATCGTC 60 Query 65 GTCTT-CCCCAAATTAGGGTTTTCTGGGAATTAGGTTGATTAAATTATGCGAGGCGGTGG 123 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 GTCTTCCCCCAAATTAGGGTTTTCTGGGAATTAGGTTAATTAAATTATGCGAGGCGGTGG 120 Query 124 TAGGAGAAGGTCAAACGGTGGTGGTAGTTCTGGCAAAAACAAGGCTAAATCTCCAGGACA 183 ||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||||| Sbjct 121 TAGGAGAAGATCAAACGGTGGTGGTGGTTCTGGCAAAAGCAAGGCTAGATCTCCAGGACA 180 Query 184 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCACCGACG 243 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCGCCGACG 240 Query 244 TCAGAATAATACTACTTTGTTTGTTGAAGGAGGTATTCTCTCCGACTACCGAAAAGATCC 303 |||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 241 TCAGAATAATACTACTCTGTTTGTCGAAGGAGGCATTCTCTCCGATTACCGAAAAGATCC 300 Query 304 TAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAGATCTAGAAG 363 ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 301 GAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAAATATGGAAG 360 Query 364 CATAGAGCGTGTAAAAGCTTCTGCTTCCACGAGTGGTCCAAGGAAATGCAGTGGTAATAC 423 || | | |||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 CACATATCGTGTAAAAGTTTCTGCTTCCATGAGTGGTCCAAGGAAATGCAGTGGTAATAC 420 Query 424 TTATGTGTATCAATATCCTTCCATTGATTTTGAGGAAGGTTTGGATCGAAGATCAGGAGT 483 |||||||||||| ||||||||||||||||||| | |||| || || |||| | |||| || Sbjct 421 TTATGTGTATCAGTATCCTTCCATTGATTTTGTGCAAGGGTTAGAGCGAAAAGCAGGCGT 480 Query 484 TGAAAGTGATCAAATGAAT-G--AAAGTCC-ACTGGTGTTGGGGAAGTCAGAGGCGACTC 539 |||||||||||||||| || | |||||| | | ||||||||||||||||||||||||| Sbjct 481 TGAAAGTGATCAAATGGATGGTTCAAGTCCTA-TTGTGTTGGGGAAGTCAGAGGCGACTC 539 Query 540 AAATTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AAGTTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599 Query 600 ATTACGAATACGAACCGAGTTACGTTTTGGGTGATGATTCTCATAAAGGATTGGGATTTT 659 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 600 ATTACGAATACGAACCGAGTTTTGTTTTGGGTGATGATTCTCATAGAGGATTGGGATTTT 659 Query 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCTTTGGGAGATC 719 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCATTGGGAGATC 719 Query 720 AAGGTGGTTCATTTTCCCATGAGGAGGAGGGTGATGCTGTTGACGAATCTGGTGGAAATG 779 |||||||||||||||||| ||||||||| | |||||||||||| || ||||||||||||| Sbjct 720 AAGGTGGTTCATTTTCCCCTGAGGAGGAAGTTGATGCTGTTGAGGAGTCTGGTGGAAATG 779 Query 780 ACGATGAACTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ACGATGAAGTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839 Query 840 CTATAGGAGGGATGAAGTTGTACACtgaagatgtatctggtgaagagagtgatggagaag 899 ||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | || Sbjct 840 CTATAGGAGGGATGAAGTTATACACTGAAGATATATCTGGTGAAGAGAGTGAT-G-G-AG 896 Query 900 aagagatgaatgatgatgatgatgatgaatctggagatgaagGAAGCAGTGGATCTTCTG 959 |||| | | | |||| |||||||||||||||||||||||||| |||| | ||||||||| Sbjct 897 AAGA-A-G-A-GATG--GATGATGATGAATCTGGAGATGAAGGCAGCACTAGATCTTCTG 950 Query 960 AATTATCTGAGAGTGACAGCTCGGAAGATATGTTTGGAAGTTATTCCGAGATTGATGATG 1019 ||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 951 AATCATCCGAGAGTGACAGCTCGGAAGACATGTTTGGAAGTAATTCCGAGATTGATGATG 1010 Query 1020 ATGTTGCCAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1079 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 CTGTTGCAAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1070 Query 1080 GGTTAGCAGAACAGTCTTTGGATAAATTAGATTTGTCGAGTGATGATAGTTCTTCAAGCG 1139 |||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| | Sbjct 1071 GGTTGGCAGAACAGTCATTGGATAAATTGGATTTGTCAAGTGATGACAGTTCTTCAAGTG 1130 Query 1140 ATTCTTCGGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCAAAAAGCTTCAATGG 1199 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1131 ATTCTTCTGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCGAAAAGCTTCAATGG 1190 Query 1200 AATATGGTAAGAAGAAGACAACAAGAAGTGGCTACTCGGGGCATGGTAAGTCTACTAATC 1259 ||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| Sbjct 1191 AATATGGTAAGAAGAAGACGACAAGAAGTCGTTTCTCGGGGCATGGTAAGTCTACTAATC 1250 Query 1260 CATTGGCAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCGGGGAAGAAGA 1319 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1251 CATTGACAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCAGGGAAGAAGA 1310 Query 1320 ATAAGAAGAAAGAGGTGGCTAAGTTTCCCCAGTCTTGGCCTTCACGGGCACCAAAGAGCA 1379 | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1311 ACAAGAAGAAAGATGTGGCTAAGTTTCCCCAGTCTTGGCCTTCAGGGGCACCAAAGAGCA 1370 Query 1380 AGAATTCCCGTAGTTTTCCTGGTGAGAACAAGAAACACCGCAAAGAATACATTGCTTTGA 1439 |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1371 AGAATTCCCGCAATTTTCCTGGTGAGAAGAAGAAACACCGCAAAGAATACATTGCTGTGA 1430 Query 1440 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAATTCTCAGTTAG 1499 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1431 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAACTCTCAATTAG 1490 Query 1500 AGAATTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAACGTATGCATAATCGAGATT 1559 ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1491 AGAGGTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAGCGTATGCATAATAGAGATT 1550 Query 1560 GCTCTCAGGTAAGACGATTAGCAGATGTCTACCGCTTATCAAGTAGCTGCAATGGTTCTG 1619 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1551 GCTCTCAGGTAAGACGATTAGCAGATGTATATCGCTTATCAAGTAGCTGCAATGGTTCTG 1610 Query 1620 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1670 Query 1680 ATAAACTTCGCATTGAGAAGCTAATAGGAGCTGGAGATGAGGATTGTGATTTTGCTGTCA 1739 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1671 ATAAACTTCGCATTGAGAAGCTAATAGGAGCAGGAGATGAGGATTATGATTTTGCTGTCA 1730 Query 1740 GTGGAGGGGTAAAAGGGAAATCTGGAAGTTTAGATAGGAAAAAAGCAAAAGACTCAGCTA 1799 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || | Sbjct 1731 GTGGAGGGGTAAAAGGGAAATCGGGAAGTTTAGATAGGAAGAAAGCAAAAGACTCCGCCA 1790 Query 1800 AAAAGCGACCTACTAGAGAGGAACGGGAGAGAAAC-AAAAGCAATGGGAAGAAGAGTTCT 1858 |||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||| | Sbjct 1791 AAAAGCGAACTACTAGAGAAGAACGGGAGAGAA-CTAAAAGCAATGGGAAGAAGAGTT-T 1848 Query 1859 -TATGCTGATCAACCTGTATCATTTGTGTCAAGTGGCATAATCGATTCTGAGATAGCTGT 1917 |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 1849 ATATGCTGATCAACCTGTATCGTTTGTTTCTAGTGGCATAATCGATTCTGAGATAGCTGT 1908 Query 1918 TGCAAAAACCTCAGTTGAAAAAGTTGCAAAAGAGGTAGCTGAAACTACTCCGGGAACCTC 1977 ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| Sbjct 1909 TGCAAAAACCTCAGTTGAAAAAGATGCAAAACAGGTAGCTGAAACTACTCCAGGAACCTC 1968 Query 1978 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACCAGAGGTTTTGGATCCAAAATGAT 2037 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1969 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACTAGAGGCTTTGGATCCAAAATGAT 2028 Query 2038 GGCTAAAATGGGATTCATAGATGGAGGTGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2097 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2029 GGCGAAAATGGGATTCATAGATGGAGGCGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2088 Query 2098 GCCAATAGAAGCTGTTCAGCGTCCGAAATCACTTGGGTTAGGTCTGGATTTCTCCATTGA 2157 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 2089 GCCAATAGAAGCTGTTCAGCGTCCAAAATCACTTGGGTTAGGTCTGGATTTCAACATTGA 2148 Query 2158 CACTGAAGACCCGAGTCCGTCAAGTAATAACAATAACAACGCTAAACGGAACAGATCTTC 2217 |||||||||||||||||||||||| |||||||||||||||||| |||||||| || Sbjct 2149 CACTGAAGACCCGAGTCCGTCAAG------CAATAACAACGCTAAACGCAACAGATCGTC 2202 Query 2218 GTCCTCCGGGAAACATGGGAAACGCATCACCCATGACAATGGTGCCTCTGGTTCAGGAAG 2277 ||||| |||||||||| |||||||| | ||||||| ||||||||||||||| ||||| | Sbjct 2203 TTCCTCTGGGAAACATGTGAAACGCACCTCCCATGAAAATGGTGCCTCTGGTGCAGGAGG 2262 Query 2278 AATCAGGGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2337 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2263 AATTAGAGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2322 Query 2338 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTCTGGGTAGAGAGTCACAAGGCATAGT 2397 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 2323 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTTTGGGAAGAGAGTCACAAGGCATAGT 2382 Query 2398 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGTGCTGAAGGCTAAAC 2457 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2383 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGCGCTGAAGGCTAAAG 2442 Query 2458 ATTGAAGTATTTAACGGTCAATGTTTGAACAAGAACAGTAAGATATCGTTTTTAAGTATG 2517 ||| ||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||| Sbjct 2443 ATTTAAGTATTTAACACTCAAGGTTTGAACAAGAACAGTAAGATATTGTTTT-AAGTATG 2501 Query 2518 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTT-AAGACTTGGGAGCA 2576 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2502 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTTCAAGACTTGGGAGCA 2561 Query 2577 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2609 ||||||||||||||||||||||||||||||||| Sbjct 2562 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99605990675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5