BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09900.1 Length=1001 Score E Sequences producing significant alignments: (Bits) Value Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1 1327 0.0 Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 789 0.0 > Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1 Length=857 Score = 1327 bits (718), Expect = 0.0 Identities = 819/866 (95%), Gaps = 14/866 (2%) Strand=Plus/Plus Query 29 TCTCCGGCGAGAAGAGATTTTCCGGGGGAAAATAGCAAAAG--CTCGGTTTTAGTTTCTG 86 ||||||||||||||||||||||| ||||||||||||| || |||||||||||||| || Sbjct 1 TCTCCGGCGAGAAGAGATTTTCC-GGGGAAAATAGCATGAGCTCTCGGTTTTAGTTTGTG 59 Query 87 TTTAGAAAGAGGATACAGAATAGTGATTACTAACATCTTCTCCGATGGCGGTTGCGCCGG 146 |||||||||||| || | || | ||| ||||||| ||||||||||||||||| Sbjct 60 TTTAGAAAGAGG--AC-G--TA--G----CTATTATCTTCTGTGATGGCGGTTGCGCCGG 108 Query 147 CAAGAGCTCGTTCAGACTATGATTATCTCATCAAGCTTCTCCTCATCGGTGATAGCGGTG 206 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct 109 CAAGAGCTCGTTCAGACTATGATTACCTCATCAAGCTCCTCCTCATCGGCGATAGCGGTG 168 Query 207 TGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGGATGATACTTTCACCACGAGTTTCATTA 266 |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 169 TGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATGATACTTTTACCACGAGTTTCATTA 228 Query 267 CTACCATTGGAATCGACTTCAAGATAAGAACAGTCGAACTTGATGGGAAGCGTATCAAAT 326 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 229 CTACCATTGGAATCGATTTCAAGATAAGAACAGTCGAACTTGATGGCAAGCGTATCAAAT 288 Query 327 TGCAGATATGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACCACAGCATATTACA 386 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 289 TGCAGATTTGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACTACAGCATATTACA 348 Query 387 GAGGAGCGATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCATTCAACAACA 446 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 349 GAGGAGCTATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCTTTCAACAACA 408 Query 447 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAGATATTGG 506 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 409 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAAATATTGG 468 Query 507 TCGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAAGGACAAG 566 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 469 TTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAGGGACAAG 528 Query 567 CTCTTGCTGATGAGTATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCAGAATG 626 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 529 CTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAACGAGTGCAAAAACAAACCAGAATG 588 Query 627 TCGAGCAGGTTTTCCTTTCTATCGCTAAAGACATAAAACAAAGACTCACAGAAAGCGATA 686 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 589 TCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAAAACAAAGGCTCACAGAAAGCGATA 648 Query 687 CAAAAGCCGAGCCCCAAGGGATCAAGATCACTAAACAAGATGCTAACAAAGCCTCATCGT 746 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 649 CAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAACAAGATGCTAACAAAGCCTCATCGT 708 Query 747 CTTCTACAAATGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGAACCTGTTT 806 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 709 CTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGGACCTGTTT 768 Query 807 CTAATCTCTTACCGTCTTTAATCTTCTTCGCATCATTCAAGGGATCGTCCTATGTTCTTA 866 ||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||| Sbjct 769 CTAATCTTTTACCGTCGTTAATCTTATTCGCATCATTCAAGAGATCGTCCTATGTTCTTA 828 Query 867 TTAGTAGGAGGATAGACTTAATTGAT 892 |||||||||||||||||||||||||| Sbjct 829 TTAGTAGGAGGATAGACTTAATTGAT 854 > Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 Length=1117 Score = 789 bits (427), Expect = 0.0 Identities = 596/677 (88%), Gaps = 14/677 (2%) Strand=Plus/Plus Query 122 TCTTCTC--CGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTATCTCATCA 179 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 189 TCTTCTCTGCGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCA 248 Query 180 AGCTTCTCCTCATCGGTGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGG 239 ||||||| |||||||| |||||||||||||| || ||||| |||||||| || || || | Sbjct 249 AGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCTG 308 Query 240 ATGATACTTTCACCACGAGTTTCATTACTACCATT-GG---AATCGACTTCAAGATAAGA 295 ||||||||||||| || |||||||||||||||||| || ||| ||||||||||||||| Sbjct 309 ATGATACTTTCACTACAAGTTTCATTACTACCATTGGGTATAATTGACTTCAAGATAAGA 368 Query 296 ACAGTCGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGACAAGAA 355 || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 369 ACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGTCAAGAA 428 Query 356 CGTTTTAGAACTATAACCACAGCATATTACAGAGGAGCGATGGGTATATTACTCGTCTAT 415 ||||| |||||||| || ||||| |||||||| ||||||||||||||||| || ||||| Sbjct 429 CGTTTCAGAACTATTACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTAC 488 Query 416 GATGTAACAGATGAGTCATCATTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAG 475 |||||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 489 GATGTAACGGATGAGTCGTCTTTCAACAATATTAGGAACTGGATGAAGAACATCGAGCAA 548 Query 476 CATGCGTCCGATAGTGTCAACAAGATATTGGTCGGTAACAAAGCCGACATGGACGAAAGC 535 ||||| || |||| ||||||||| |||||||| ||||||||||| || ||||| |||||| Sbjct 549 CATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGC 608 Query 536 AAAAGGGCTGTCCCAACATCAAAAGGACAAGCTCTTG-CTGATGAGTATGGAATCAAATT 594 ||||||||||| |||||| |||| || |||||| ||| |||||||||||||||||||||| Sbjct 609 AAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCT-TTGGCTGATGAGTATGGAATCAAATT 667 Query 595 CTTTGAGACGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCTAA 654 ||||||||||||||| |||||||||| |||||||| | ||||||||||| ||||| || Sbjct 668 CTTTGAGACGAGTGCCAAAACAAACCTCAATGTCGAAAATGTTTTCCTTTCAATCGCAAA 727 Query 655 AGACATAAAACAAAGACTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGAT 714 |||||||||||||||| | ||||||| |||||||||||| ||||||||||| |||||||| Sbjct 728 AGACATAAAACAAAGATTGACAGAAACCGATACAAAAGCAGAGCCCCAAGGCATCAAGAT 787 Query 715 CACTAAACAAGATGCTAACAAAGCCTCATCGTCTTCTACAAATGAGAAATCAGCTTGCTG 774 ||| ||||||||| || |||||||| |||||| || ||||| ||||||||||| Sbjct 788 CACCAAACAAGATACT------GCCTCATCATCTTCTGCAGCCGAGAAGTCAGCTTGCTG 841 Query 775 CAGTTATGTTTAGAAGT 791 ||||| |||||| ||| Sbjct 842 TAGTTACGTTTAGGAGT 858 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37207966992 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5