BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10060.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928695 jgi|Araly1|928695|scaffold_301152.1 1136 0.0
Ahg320852 jgi|Araly1|320852|fgenesh1_pm.C_scaffold_4000909 448 5e-125
Ahg478335 jgi|Araly1|478335|fgenesh2_kg.3__1036__AT3G10070.1 191 1e-47
> Ahg928695 jgi|Araly1|928695|scaffold_301152.1
Length=735
Score = 1136 bits (615), Expect = 0.0
Identities = 696/736 (95%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 115 AACACAAAAACATTGAAAGAATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACT 174
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACACAAAAACATTGAAACAATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACT 60
Query 175 CTTTGTCTTCCTCCATTCCCTTTCCCTCAAGAAAAAGGCAATCCAAACCGTACCGGTGCT 234
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTGTCTTCCTCCATTCCTTTTCCATCAAGAAAAAGGCAATCCAAACCGTACCGGTGCT 120
Query 235 CGTTACCTTCTCCCGGCTGCGAAAAGGTCATCAGAACAGAGACTGTCCTGCCTCCGGCGC 294
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 121 CGTTACCTTCTCCCGGCTGCGAAAAGGTCATCAGACCAGAGACTGTCGTTTCTCCGGCGC 180
Query 295 CGGTGAG-TTGTGAAGGGAGAAGGGTCTTACTTGGATGTCTTCTCGCTACAGCTTCTGGG 353
| ||||| || ||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 181 CTGTGAGCTT-CCAAGGGAGAAGGGTTTTACTTGGATGTCTCCTCGCTACCGCTTCTGGG 239
Query 354 ATTTTGTCAACTGGTTCAGCCGAGGCAGTAAGCACCAGTAGAAGAGCTCTACGTGCATCC 413
||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 240 ATTTTGTCAACTGATTCAGCCGAGGCCGTAAGCACCAGCAGAAGAGCTCTACGTGCATCC 299
Query 414 AAGTTACCGGAAAGCGATTTCACGACTCTCCCCAATGGTCTCAAGTACTATGATATAAAG 473
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 AAGTTACCGGAAAGCGATTTCACGACTCTCCCTAATGGTCTCAAGTACTATGATATAAAG 359
Query 474 GTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTTCACTATGTTGCAAAA 533
|||||||||||||||||||||||||||||||||||||||||||| | || | ||||
Sbjct 360 GTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTACGGGATAACGTAAAA 419
Query 534 TGGAAAGGGATAACGTTCATGACAAGTCGACAAGGACTTGGTGTTGGAGGTGGAACGCCT 593
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 420 TGGAAAGGGATAACGTTTATGACAAGCCGACAAGGACTTGGCGTTGGAGGTGGAACGCCT 479
Query 594 TATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGT 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATGGGTTTGACGTTGGGCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGT 539
Query 654 GTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTAC 713
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCTGAGCTGGCTTAC 599
Query 714 GGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAGCTTGACATTGAGCTG 773
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 600 GGGAAGACAGGAGTGCAAGAGATTCCTCCAAATGCAACGATAGAGCTTGACATTGAGTTA 659
Query 774 TTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGAAGATAGTTGAAGGCTAAAAGGAC 833
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGAAGATCGTTGAAGGCTAAAAGGAC 719
Query 834 TAATGAAGCCAACATT 849
|||||||||||| |||
Sbjct 720 TAATGAAGCCAAAATT 735
> Ahg320852 jgi|Araly1|320852|fgenesh1_pm.C_scaffold_4000909
Length=687
Score = 448 bits (242), Expect = 5e-125
Identities = 376/437 (86%), Gaps = 23/437 (5%)
Strand=Plus/Plus
Query 401 TCTACGTGCATCCAAGTTACCGGAAAGCGATTTCACGACTCTCCCCAATGGTCTCAAGTA 460
|||||| ||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct 264 TCTACGAGCATCCAAGTTACCGGAAAGCGAATTAACGACTCTCCCTAGTGGTCTCAAGTA 323
Query 461 CTATGATAT-AAAGGTTGGCAATGGAGCAGAGGCTGTGAA-AGGA-TCTCGGGTCGCAGT 517
||||||||| ||| ||||||||||||| |||||||||||| | | | || | | ||
Sbjct 324 CTATGATATAAAAAGTTGGCAATGGAGTAGAGGCTGTGAATA-CATTTTC---T-G--GT 376
Query 518 TCACTATGTTGCAAAATGGAAAGGGATAAC-GTTCATGACAAGTCGACAAGGACTTGGTG 576
| || | ||| ||||| |||| | |||| ||| | ||||| |||||||||||||| |
Sbjct 377 TAAC--T-TTG-AAAAT-GAAAATGCTAACAGTT-TTCACAAGCCGACAAGGACTTGGCG 430
Query 577 TTGGAGGTGGAACGCCTTATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGA 636
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 431 TTGGAGGTGGAACGCCTTACGGGTTTGACGTTGGACAATCAGAGAGAGGCAATGTTCTGA 490
Query 637 AAGGACTTGATCTTGGTGTTG-AAGGGAT-GC---GTG-TAGGCGGTCAGAGATTGGTGA 690
||||||| | ||||| || |||| | | | |||| |||||||||||||||
Sbjct 491 AAGGACTAGTTCTTGAAACTGAAAGGCTTCTCAAACCGAAAGGCTGTCAGAGATTGGTGA 550
Query 691 TTGTTCCTCCCGAGCTGGCTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTA 750
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 551 TTGTTCCTCCCGAGTTGGCTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCTAAATGCAA 610
Query 751 CGATAGAGCTTGACATTGAGCTGTTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGA 810
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 611 CGATAGAGCTTGACATTGAGTTGTTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGA 670
Query 811 AGATAGTTGAAGGCTAA 827
|||| ||||||||||||
Sbjct 671 AGATCGTTGAAGGCTAA 687
Score = 219 bits (118), Expect = 5e-56
Identities = 136/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 135 ATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACTCTTTGTCTTCCTCCATTCCC 194
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACTCTCGGTCTTCCTCCATTCCC 60
Query 195 TTTCCCTCAAGAAAAAGGCAATCCAAACCGTACCGGTGCTCGTTACCTTCTCCCGGCTGC 254
||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 61 TTTTCATCAAGAAAAAGGCAATCCAAACTGTACCTGTGCTCGTTACCTTCTCCCGGCTGC 120
Query 255 GAAAAGGTCATCAGAACAGAGACTG 279
|||||||||||| || || ||||||
Sbjct 121 GAAAAGGTCATCGGACCAAAGACTG 145
> Ahg478335 jgi|Araly1|478335|fgenesh2_kg.3__1036__AT3G10070.1
Length=1939
Score = 191 bits (103), Expect = 1e-47
Identities = 126/136 (93%), Gaps = 5/136 (4%)
Strand=Plus/Minus
Query 906 GGAAGATTCAACTGTATGAGAAGAATCTGTTTAATGGATTATACCGGCTAGTCCGGTTTT 965
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1939 GGAAGATTCAACTGTATGAGAAGAATCTGTTTAATGGATAATACCAGCTAGTCCGGTTC- 1881
Query 966 GTAACCGCTTTATAACTGTGTCTCATCACTCAATTCATACACTTTTG-GCCGTTTTGCAA 1024
||||||||||||||||||||||||||| |||||||||||||| |||| || ||| ||||
Sbjct 1880 GTAACCGCTTTATAACTGTGTCTCATCTCTCAATTCATACACCTTTGTGC--TTT-GCAA 1824
Query 1025 AACATTGAATCAATTC 1040
||||||||||||||||
Sbjct 1823 AACATTGAATCAATTC 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5