BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10210.1 Length=928 Score E Sequences producing significant alignments: (Bits) Value Ahg928710 jgi|Araly1|928710|scaffold_301167.1 1177 0.0 > Ahg928710 jgi|Araly1|928710|scaffold_301167.1 Length=754 Score = 1177 bits (637), Expect = 0.0 Identities = 717/756 (95%), Gaps = 4/756 (1%) Strand=Plus/Plus Query 16 GGAGGAGGAATATTCCGGTGATGGCTGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 75 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1 GGAGGAGGAATATTCCGGCGATGGCGGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 60 Query 76 TAGGAATTGACGCTAGACCCTTCTTGACGAGAAGCGATGACGTTGATGAACAAGAAAACT 135 |||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| |||| Sbjct 61 TAGGAATTGATGCTCGACCGTTCTTAACGAGAAGCGATGAGGTTGATGAACAAGAGAACT 120 Query 136 GGCATGATTGTCCCCAATACT-TAGGAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 194 |||| |||||||| ||||| | | | |||||||||||||||||||||||||||||||||| Sbjct 121 GGCACGATTGTCCTCAATA-TCTCGAAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 179 Query 195 TTCTTTACTCTCCAGGGCTTGGATAGGTCCGGTAACCGGATTTTCCGCATCGTCGGAAAG 254 ||||| || ||||| |||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 180 TTCTTCACACTCCAAGGCTTGGATAAGTCCGGTAACCGGATTTTCCGCGTCGTCGGAAAG 239 Query 255 TATTTCCCTGCTCGTGTAGTGAGTGCGGAGCGGCTGAAGAAGTATATATCCCAGAAGATA 314 ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct 240 TATTTCCCTGCTCGTGTTGTGAGTGCAGAGCGGCTGAAGAAGTATATATTCCAGAAGATA 299 Query 315 AGCAACCAATGTCCTGAGGGACCTTTGTGCTTGGTTTACATGCATAGCACAGTCCAAAAG 374 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 300 AGCAACCAATGTCCTGAGGGACCCTTGTGCTTGGTTTACATGCATAGCACAGTGCAAAAG 359 Query 375 GACGACAATTCACCGGGAATTACCATCTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 434 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 GACGAAAACTCACCGGGAATTACCATTTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 419 Query 435 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCAAGACTTGTC 494 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 420 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCCAGACTTGTC 479 Query 495 ATTGCCACTCTTGGCCGCCTTCTTTTAAGTGGAGGACTGTACTGGAAGATTAAGTACGTG 554 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| Sbjct 480 ATTGCCACTCTTGGCCGTCTTCTTCTAAGTGGAGGACTGTACTGGAAGATTAAGTATGTG 539 Query 555 AGCAGGTTGCAGTACCTTTGGGAGGACATAAAGAAAGGCGAGGTGGAAATTCCCGACTTT 614 |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 540 AGCAGGTTGCAGTATCTTTGGGAGGAAATAAAGAAAGGTGAGGTAGAAATTCCCGACTTT 599 Query 615 GTGAAGAACCATGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 674 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTGAAGAACCACGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 659 Query 675 GATCCTTTCCAGTTAAGC-GAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 733 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GATCCTTTCCAGTTA-GCAGAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 718 Query 734 CAGATGGGTCTCATAGTACAATTGCTCTTTGTTGAG 769 |||||||||||||||||||| ||||||||||||||| Sbjct 719 CAGATGGGTCTCATAGTACATTTGCTCTTTGTTGAG 754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34424994051 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5