BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10230.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478348 jgi|Araly1|478348|fgenesh2_kg.3__1049__AT3G10230.1 3046 0.0
> Ahg478348 jgi|Araly1|478348|fgenesh2_kg.3__1049__AT3G10230.1
Length=1953
Score = 3046 bits (1649), Expect = 0.0
Identities = 1866/1969 (95%), Gaps = 21/1969 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTACTGCTTCTGGGTAA 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CTCTCTCTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTTCTGCTTCTGGGTAA 60
Query 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAGCAATTTAGTATTCCATTTTCTCAATCCCT 120
||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||||
Sbjct 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAG------AG-ATTTCATATTCGCAATCCCT 113
Query 121 CTGGTTAGAAATCGTGTCCGGTGATTTTTGAATTATATCCTTTTGGTGTTTTCTTCGATT 180
|||||||||||||||||| ||||||||||||||||||||||||| | | | ||||
Sbjct 114 CTGGTTAGAAATCGTGTCTGGTGATTTTTGAATTATATCCTTTT-G-G------T-GATT 164
Query 181 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 224
Query 241 TCAGTTTCATGGGTTTGAGAGATTATGCAGTAACAATCCATACCATTCAAGGGTTAGGCT 300
||||||||||||||||||||||||| ||||||| |||||| ||| | |||||||||||||
Sbjct 225 TCAGTTTCATGGGTTTGAGAGATTAAGCAGTAATAATCCAAACCCTGCAAGGGTTAGGCT 284
Query 301 TGGTGTGAAGAAAAGGGCTATCAAAATTGTCTCTAGTGTAGTGAGTGGTAGCGCTGCTCT 360
|||| |||||||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 285 TGGTCTGAAGAAAAGGGCTATCAAAATTGGCTCTAGTGTTGCCAGTGGTAGTGCTGCTCT 344
Query 361 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTTGAGCTTCCTTTGTACGA 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTCGAGCTTCCTTTGTACGA 404
Query 421 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 464
Query 481 CGTGGCTCAGCAGGTTTCTGAAGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCTAA 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 465 TGTGGCTCAGCAGGTTTCTGAGGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCAAA 524
Query 541 GCTCATATGGCCTAACAATTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCTCATATGGCCTAACAACTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 584
Query 601 AGACTGCCTGGATACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 660
||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGATTGCTTAGACACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 644
Query 661 GGATTTGAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGATTTAAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 704
Query 721 GAAATGTATTACCAACGGTGTTAAATTTCATCAGTCTAAGGTCACTAATGTGGTTCACGA 780
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 705 GAAATGTATTACCAACGGTGTTAAGTTTCATCAGTCTAAGGTCACTAACGTGGTTCACGA 764
Query 781 GGAGGCAAACTCCACTGTGGTCTGCAGTGACGGTGTAAAGATTCAGGCTTCCGTGGTTCT 840
||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 765 GGAGGCAAACTCCACTGTGGTTTGCAGCGACGGTGTGAAGATTCAGGCTTCGGTGGTTCT 824
Query 841 TGATGCCACTGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCTTACAACCCTGGGTA 900
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 825 TGATGCCACCGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCGTACAACCCTGGGTA 884
Query 901 CCAAGTAGCTTACGGGATTGTAGCTGAAGTTGATGGTCACCCATTCGATGTAGACAAAAT 960
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 885 CCAAGTAGCTTACGGGATTATAGCTGAAGTCGATGGTCACCCTTTCGATGTAGACAAAAT 944
Query 961 GGTGTTCATGGATTGGAGAGACAAACATCTGGACTCATATCCTGAGCTGAAAGAACGGAA 1020
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 945 GGTGTTCATGGATTGGAGAGACAGACATCTGGACTCATATCCTGAGCTTAAAGAACGGAA 1004
Query 1021 CAGCAAGATCCCAACGTTCTTGTACGCTATGCCATTTTCTTCCAACCGAATATTTCTTGA 1080
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1005 CAGCAAGATCCCAACATTCTTGTACGCGATGCCGTTTTCTTCCAACCGAATATTTCTTGA 1064
Query 1081 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGAGAATGGAAGATATCCAAGAAAGAATGGC 1140
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1065 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGCGTATGGACGATATCCAAGAAAGAATGGC 1124
Query 1141 TGCTAGACTGAAACATCTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGCTAGACTGAAACATTTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1184
Query 1201 GATCCCGATGGGCGGTCCTTTACCAGTCTTACCTCAACGGGTTGTGGGGATTGGTGGGAC 1260
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1185 GATCCCAATGGGCGGTCCTTTACCAGTCTTACCTCAACGAGTTGTCGGGATTGGTGGGAC 1244
Query 1261 AGCAGGAATGGTTCATCCTTCAACTGGTTACATGGTTGCTAGGACTCTTGCAGCTGCACC 1320
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1245 AGCGGGAATGGTTCATCCCTCAACTGGTTACATGGTAGCTAGGACTCTTGCAGCTGCGCC 1304
Query 1321 AATAGTTGCAAATGCCATTGTGAGATACCTCGGTTCACCAAGTAGTAATAGCCTGAGAGG 1380
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1305 AATAGTTGCAAACGCCATTGTGAGATACCTCGGTTCACCGAGTAGTAACAGCCTAAGAGG 1364
Query 1381 AGATCAACTCTCTGCTGAGGTTTGGAGAGACTTGTGGCCTATCGAACGGCGTAGACAGAG 1440
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1365 AGATCAACTCTCTGCTGAGGTATGGAGAGACTTGTGGCCTATTGAACGGCGCAGACAGAG 1424
Query 1441 GGAGTTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCGATTTAGACGCTACTAGAAG 1500
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1425 GGAATTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCAACTTAGACGCTACTAGAAG 1484
Query 1501 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1544
Query 1561 GCTGTTTCTCCCGGAACTGTTGGTCTTCGGGTTGTCGCTCTTCTCACACGCTTCCAATAC 1620
|||||||||||||||||||||| |||| ||||||||||||||||| || ||||| |||||
Sbjct 1545 GCTGTTTCTCCCGGAACTGTTGTTCTTTGGGTTGTCGCTCTTCTCGCATGCTTCTAATAC 1604
Query 1621 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1664
Query 1681 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1724
Query 1741 TCTTGACC-AGTAGTATATCCGCATTGCAAGTCGTTGGATAATTGTGTATAAACCACAGA 1799
|||||||| ||| |||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 1725 TCTTGACCCAGTGGTATATCCGCATTGCAAGTCGTCGCATAATTGTGTATAAACCGCAGA 1784
Query 1800 TCATAACCTGAATCCTTGTGAAATCAAATTGTTACTACT-AGT-T-CATTAAAATTAATA 1856
|||||||||||||||||||||||||||| |||||||| | | | | ||||||||||||||
Sbjct 1785 TCATAACCTGAATCCTTGTGAAATCAAAGTGTTACTAGTTATTCTTCATTAAAATTAATA 1844
Query 1857 CTTTGTGCTGCATTGTGTTT-CACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1915
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TTTTGTGCTGCATCGTGTTTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1904
Query 1916 ATAAGATAAAAGAGTGGATTTTGAACACAAAAGCAAATCTTTCAAACTC 1964
||||||||||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 1905 ATAAGATAAAAGAATTGATGTTGAACACAAAAGCAACTCTTTCAAACTC 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5