BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10350.2 Length=1601 Score E Sequences producing significant alignments: (Bits) Value Ahg478365 jgi|Araly1|478365|fgenesh2_kg.3__1066__AT3G10350.1 1105 0.0 > Ahg478365 jgi|Araly1|478365|fgenesh2_kg.3__1066__AT3G10350.1 Length=1861 Score = 1105 bits (598), Expect = 0.0 Identities = 733/793 (92%), Gaps = 29/793 (4%) Strand=Plus/Plus Query 811 AATCGTATTTGATACTGCACCAACGGGTCATACGCTAAGGCTACTCTCTTTACCTGATTT 870 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 AATTGTGTTTGATACTGCACCAACGGGTCATACGCTAAGGCTACTCTCTTTACCTGATTT 829 Query 871 CTTGGATGCATCCATTGGTAAAATCTTGAAGCTTAGACAGAAAATAACCTCGGCTACTTC 930 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 830 CTTGGATGCGTCCATTGGTAAAATCTTGAAGCTTAGACAGAAAATAACCTCAGCTACTTC 889 Query 931 AGCGATCAAATCAGTTTTTGGGAAAGAAGAAAAGGGGCCTGATGCTGCCGACAAATTGGA 990 ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 890 AGCGATCAAATCAGTCTTTGGTAAAGAAGAAAATCGGCCTGATGCTGCCGACAAATTGGA 949 Query 991 AAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGA 1050 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 ACGACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGA 1009 Query 1051 ATTCGTCATTGTCACTATCCCAACGGTAATGGCTGTCAGCGAGTCTTCTAGGTTAAGTGC 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 ATTCGTCATTGTCACTATCCCAACGGTAATGGCTGTCAGCGAGTCTTCTAGGTTAAGTGC 1069 Query 1111 TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGCTTCTCCCGCC 1170 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1070 TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGATTCTCCCGCC 1129 Query 1171 ATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAGGACCAAATGCGGGCTCTTGA 1230 |||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 1130 ATCCTCCTCAGACTGCAAGTTTTGCTCAATTAAGAGAAAGGATCAAATGCGGGCTCTTGA 1189 Query 1231 TATGATCCGGGAGGATTCAGAACTCTCTGCTTTGACACTGATGGAGGCTCCGCTGGTTGA 1290 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1190 TATGATCCGGGAGGATTCCGAACTCTCTGCTTTGACACTGATGGAGGCTCCACTGGTTGA 1249 Query 1291 TATGGAGATCAGAGGTGTCCCTGCTCTGCGCTTCTTGGGCGATATCATTTGGAAATAAGA 1350 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1250 TATGGAGATCAGAGGTGTCCCTGCTCTGCGCTTCTTGGGTGATATCATTTGGAAATAAGA 1309 Query 1351 TCATTACATATTATCACCACAAGGATGAAGAACAAGCAGGTTCACTTGTATGAGATAGTG 1410 |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 TCATTACACATTATCAACACAAGGATGAAGAACAAGCAGGTTCACTTGTATGAGATAGT- 1368 Query 1411 TTGGTTAATACATTACATAGTTTTTGGTATAGATGTTGATGTTTGTCTTTGATGGGTTTG 1470 || || | | || |||||||||| || ||| |||||||||||| Sbjct 1369 TT--TT-------------G-----G-TACAGATGTTGATATT-GTCCTTGATGGGTTTG 1406 Query 1471 GTCTTTGGCTAAAA-ATGAATATCGACGAGTTTTTCAAACTGTTAACAGATTCAGTATTT 1529 |||||||| |||| |||||||| ||| ||| || ||||||||||||| ||||||||||| Sbjct 1407 GTCTTTGGG-AAAACATGAATATTGACAAGTGTTCCAAACTGTTAACAAATTCAGTATTT 1465 Query 1530 GCTACATTTTGGTGGGTGTAAAATGTTCAGTGTAAAACTTTAG-AGCTTTTAAAATAAAA 1588 |||||||||||||||||||||||||||| | ||||||||||| | |||||||||||||| Sbjct 1466 ACTACATTTTGGTGGGTGTAAAATGTTCAAT-TAAAACTTTAGTA-CTTTTAAAATAAAA 1523 Query 1589 AATATAGCAATTC 1601 | ||||||||||| Sbjct 1524 A-TATAGCAATTC 1535 Score = 774 bits (419), Expect = 0.0 Identities = 452/468 (97%), Gaps = 1/468 (0%) Strand=Plus/Plus Query 328 TTC-AGTGAAATCAGTAGCTAGCCCAACGGAGACGATTTCAGAATTCGATGAGATGGTCT 386 ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 259 TTCAAGTGAAATCAGTAGCTAGCCCAACGGAGACGATTTCGGAATTCGAAGAGATGGTCT 318 Query 387 CCGGCACGAAACGAAAGTATTACATGCTCGGTGGGAAAGGAGGAGTGGGCAAAACTAGTT 446 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 CCGGTACTAAACGAAAGTATTACATGCTCGGTGGGAAAGGAGGAGTGGGCAAAACTAGTT 378 Query 447 GTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTA 506 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 379 GTGCTGCTTCTTTAGCTGTCAGATTCGCCAACAATGGACACCCAACTCTTGTTGTGTCTA 438 Query 507 CAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGGACTTGACTGGAGGAATGCTTG 566 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 439 CAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGGACTTGACAGGAGGAATGCTTG 498 Query 567 TCCCTGTAGAAGGACCCGAAGCTCCTTTATTTGCTTTAGAAATAAACCCTGAGAAGGCTA 626 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 499 TCCCTGTAGAAGGACCTGAAGCTCCTTTATTTGCTCTAGAAATAAACCCTGAGAAGGCTA 558 Query 627 GGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGG 686 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 559 GGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGATGAAAGATTTTATGG 618 Query 687 ATGGTATGGGACTTGGAATGCTTGTAGAACAGTTGGGGGAGCTTAAACTTGGAGAATTGC 746 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 619 ATGGTATGGGACTTGGGATGCTTGTAGAACAGTTGGGGGAGCTAAAACTTGGAGAATTGC 678 Query 747 TCGACACACCGCCTCCTGGATTGGATGAAGCCATAGCCATTTCTAAGG 794 | |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 679 TAGACACACCGCCTCCTGGATTGGATGAAGCCATTGCCATTTCTAAGG 726 Score = 318 bits (172), Expect = 7e-86 Identities = 196/207 (95%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 33 AGCAGACGaaaaaaaTGGCGACTCTGTCTTCCTATCTGTTATCTTCTCCTCCTCTATGCA 92 |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 62 AGCAGACG-AAAAAATGGCGACTCTGTCTTCCTACCTATTATCTTCTCCTCCTCTATGCA 120 Query 93 AATCCCGATTCTCGGCAACAAGTCTCGTCTCAGGAATTGATTTCATCTCTTTCTCTCCTC 152 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 121 AATCCCGATTCTCGGCAACAAGTCTCGTCTCGGGAATTGATTTCATCTCTTTCTCCCCAC 180 Query 153 GAACAACTCTCTCCTCGTCATCCACTGTCTTGCCGGCGATTCTTTCTCTTTCCGTTAAAC 212 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 181 GAACAACTCTCTCCTC---ATCCACTGTATTGCCGGCGATTCTTTCTCTTTCCGTTAAAT 237 Query 213 ATAATCGCCGGAGAAACTCGCTTCAAG 239 ||||||||||||||||||||||||||| Sbjct 238 ATAATCGCCGGAGAAACTCGCTTCAAG 264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59992135875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5