BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10405.1 Length=1073 Score E Sequences producing significant alignments: (Bits) Value Ahg478371 jgi|Araly1|478371|fgenesh2_kg.3__1072__AT3G10405.1 1376 0.0 > Ahg478371 jgi|Araly1|478371|fgenesh2_kg.3__1072__AT3G10405.1 Length=996 Score = 1376 bits (745), Expect = 0.0 Identities = 929/1015 (92%), Gaps = 23/1015 (2%) Strand=Plus/Plus Query 57 TAATGAACAGGTTTTGATGCGGTTTATGTACATGACACATGGCAAAACATGATTGGCTAC 116 |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1 TAATAAACTGGTTTTGATGCGGTTTCTGTACATGACACATGGCAAAACATGATTGGCTCC 60 Query 117 ATGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 176 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 120 Query 177 GATTTCTTCGTTGGGGTCTGCAATCTCAAAGCCAACTTCTTCATCATCTTCATATACGTA 236 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 121 GATTTCTTCGTTGGGGTCTGCAATCTCAAGGCCAACTTCTTCATCATCTTCATATACCTA 180 Query 237 CTTAGGAAGCTCTTCTCGCATCTTTGGGCTAGTTACGTCTTCTTTGTTATGGACAAAGAG 296 ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 181 CTTAGTAAGCTCTTCTCGCATCTTTGGGCTCGCTACGTCTTCTTTGTTATGGACAAAGAA 240 Query 297 TAAATCTCACCACACAAACACAAAGCTCAAGAAGCAAAAGCTATGTGTTAGAAATTCAGC 356 |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| Sbjct 241 CAAATCTCACCACACAAACACAAAGCTTAAGCAGCAAAAGCCATGTGTTAGAAATTCAGC 300 Query 357 TCAAGAGATTCCAAAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 416 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCAAGAGATTCCACAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 360 Query 417 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 420 Query 477 GATACAAGAACTTCTCAAGGAACTCGATGGCGAATTCATGGAGATTGTGTTCTGTACAGA 536 ||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 421 GATACAAGAGCTTCTTAAGGAACTTGATGGCGAATTCATGGAGATTGTTTTCTGTACAGA 480 Query 537 CGATATGATCA-AGCGTTCGTTATGGGAAGCAGTTACCACAAAACAGCCTGACCTGAAGA 595 ||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| | Sbjct 481 AGATATGATCCCA-CGCTCGTTATGGGAAGCAGTTAACACAAAACAGCCTGACCTGAACA 539 Query 596 GAGTGAAAATCGCGGAA-TCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAG 654 ||||||| ||||| || || || |||||||| ||||| ||||||||||||||||||||| Sbjct 540 GAGTGAATGTCGCG-AAGTCGCTTCCTCGGATATGCTTTTTATCTGGTTTGACAGGAGAG 598 Query 655 GAGATGATGATGTTCATTGATGCATT-CCCAGAAACTGGGCTGGAACCAGTTGTGTTTGC 713 |||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| Sbjct 599 GAGATGATGATGTTCATTGATGCATTTCCC-GAAACTGGGCTAGAACCCGTTGTGTTTGC 657 Query 714 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAACTGAAGAAATCATGGG 773 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 658 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAATTGAAGAAATCATGGG 717 Query 774 AGATCATGAGTTACTGACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGC 833 ||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||| | Sbjct 718 AGATCATGAGTTATTGACTGGGAGCGGTTCCAGCTGAAATTTTTGAGTGAGGAAGACAAC 777 Query 834 AGGACAGCTTTAAAATTCTTCAGGTTTCTGCAACAAGACTCTTAAGACTTTGTGCATTAC 893 || |||||||||||| ||||||||||||||||||| ||| || |||| ||| |||||||| Sbjct 778 AGAACAGCTTTAAAAGTCTTCAGGTTTCTGCAACATGACGCTAAAGATTTTATGCATTAC 837 Query 894 CCAAAGTATATTGTACAACAGTGCAGTCTTCAAATAAAAAAGTGAGCTGCACAAGAATGC 953 |||||||||||||||||| |||| ||||||| ||| ||||||| || ||||||||||||| Sbjct 838 CCAAAGTATATTGTACAAGAGTGTAGTCTTCCAATGAAAAAGTAAGATGCACAAGAATGC 897 Query 954 AATCAG-AAATTAAGAACTTACACAAGTTATATGAGTCAAAATGTAACTTCACTTGGACA 1012 ||| | |||||||||||| ||||||||| | | | || | | || | || Sbjct 898 AATGATCAAATTAAGAACTGACACAAGTT-TC--ACT-----TGGA-CA-CA-T---ACC 943 Query 1013 TATCCAGTCATCAAACAAATGTAAAATGAAGACGAAACCAAATCAATCTCTTTTT 1067 | | ||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 944 CA-C-AGTCACCAAACAAATGTAAAATGAAGACAAAACCAAATCAATCTCTTTTT 996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39952817016 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5