BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10410.1 Length=1828 Score E Sequences producing significant alignments: (Bits) Value Ahg903921 jgi|Araly1|903921|Al_scaffold_0003_1049 2087 0.0 > Ahg903921 jgi|Araly1|903921|Al_scaffold_0003_1049 Length=1632 Score = 2087 bits (1130), Expect = 0.0 Identities = 1186/1214 (98%), Gaps = 0/1214 (0%) Strand=Plus/Plus Query 388 GCATGTTCTACTTCTTCTTCGAGTCACGGAACAAGAAGGATGCTCCTGTTGTGATTTGGT 447 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 419 GCATGTTCTACTTCTTCTTCGAGTCACGCAACAAGAAGGATGCTCCTGTTGTGATTTGGT 478 Query 448 TGACGGGAGGGCCTGGATGTAGTAGTGAGTTGGCTGTGTTCTATGAGAATGGTCCTTTCA 507 ||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||| Sbjct 479 TGACGGGAGGGCCTGGATGCAGCAGTGAGTTGGCTATGTTCTATGAGAACGGTCCTTTCA 538 Query 508 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 598 Query 568 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 658 Query 628 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 718 Query 688 CGGAGCACCCTAAGTTGGCAAAAAACGACTTTTATATTACTGGAGAGTCATATGCTGGGC 747 | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 719 CAGAGCACCCTAAGTTGGCCAAAAACGACTTTTACATTACTGGAGAGTCATATGCTGGGC 778 Query 748 ACTATATCCCAGCTTTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 807 ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACTATATTCCGGCTCTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 838 Query 808 ATATTAACCTAAAGGGATTCGCTATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 867 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 839 ATATTAACCTAAAGGGATTCGCCATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 898 Query 868 CAGCCTATCCTGACTACGCTTTGGAAATGGGTCTAATCACGCAAAAAGAGCATGATCGCT 927 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 899 CAGCCTATCCTGACTACGCTTTGGAAATGGGTTTAATCACGCAAAAAGAGCATGATCGTT 958 Query 928 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATCAAGCTTTGTGGAACTGATGGCACAA 987 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 959 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATTAAGCTTTGTGGAACTGATGGCACAA 1018 Query 988 CTTCTTGTTTGGCATCATATCTTGTCTGCAACTCTTTGTTCAGTGGTGTAATGAGTCATG 1047 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1019 CTTCTTGTTTGGCATCATATCTTGTTTGCAACTCCTTGTTCAGTGGTGTAATGAGTCATG 1078 Query 1048 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1138 Query 1108 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCACTTGGTGTTGGGG 1167 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1139 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCGCTTGGTGTTGGGG 1198 Query 1168 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1258 Query 1228 GGAATCTCGAGGTTGGAATTCCCACGCTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1287 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1259 GGAATCTCGAGGTTGGAATTCCCACACTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1318 Query 1288 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1378 Query 1348 AGTGGTCAGGGAAAACAAACTTTGGGGCGGCTAAAGAAGTTCCGTTTATTGTGGATGGCA 1407 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1379 AGTGGTCAGGGAAAACGAACTTTGGGGCGGCTGAAGAAGTTCCGTTTATTGTGGATGGCA 1438 Query 1408 AAGAAGCAGGCTTGTTAAAGACTTATGAACAACTCAGTTTCCTCAAGGTGAGAGATGCAG 1467 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1439 AAGAAGCAGGCTTGTTGAAGACTTATGAACAACTCAGTTTCCTCAAGGTGCGAGATGCAG 1498 Query 1468 GACACATGGTTCCAATGGACCAGCCTAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1527 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1499 GACACATGGTTCCAATGGACCAGCCAAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1558 Query 1528 AGAATTCACTTATCGAAGATGCTACTGTGACTGTTGCTGCTCAGGGAGGAGAGGAACTGG 1587 ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct 1559 AGAATTCGCTTATCGAAGATGCTACTGTTACTGTGGCTGCTCAAGGAGGAGAGGAACTGG 1618 Query 1588 TTGCTCAGATGTGA 1601 |||||||||||||| Sbjct 1619 TTGCTCAGATGTGA 1632 Score = 510 bits (276), Expect = 1e-143 Identities = 320/341 (94%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 51 ATGGAGAAACTAACTTTTCTCAGCCTTCTCCTGCATTTCGTCGTCTTCATCGCTTCAACG 110 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAACTAACTTTTCTCAGCCTTCTTTTGCATTTCGTCGTCTTCATCGCTTCAACG 60 Query 111 ATACCGTCTTCATCGTTCCTCTTGAATGATCGCACCTTTGAGAGATCGAACTTGCCGTCT 170 | |||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| Sbjct 61 TTTCCGTCTTCATCGTTTCTCTTGAACGATCGCACCTTCGAGCGATCAAACTTGCCGTCG 120 Query 171 ACGCGCGCGGAGAAGCTGATCCGTGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 230 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 ACGCGCGCGGAGAAGCTGATCCGGGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 180 Query 231 ATCGATGTCGCTGATTTGCCTCTCACTGCTGCGGAGGGACCGGGGATTGTTGAACGGAAG 290 ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| Sbjct 181 ATCGATGTCGCTGATTTGCCTCTCACTGCCGCGGAGAGATCGGGGATTGTTGAACGGAAG 240 Query 291 TTCGTATTCCCGAATATACTTGCCGAT---GGTGGCCCTACTGTCGACGATTTAGGTCAT 347 ||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||| Sbjct 241 TTCGTATTCCCGAATATACTTGCCGATAATGGTGGCGCAACTGTCGAAGATTTAGGTCAT 300 Query 348 CATGCTGGTTATTACAAGCTCCCGAAATCTCGTGGCGCAAG 388 ||||||||||||||||||||||| ||||||||||||||||| Sbjct 301 CATGCTGGTTATTACAAGCTCCCAAAATCTCGTGGCGCAAG 341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68638621490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5