BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10420.2
Length=2445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928734 jgi|Araly1|928734|scaffold_301191.1 3400 0.0
> Ahg928734 jgi|Araly1|928734|scaffold_301191.1
Length=2107
Score = 3400 bits (1841), Expect = 0.0
Identities = 2021/2107 (96%), Gaps = 15/2107 (1%)
Strand=Plus/Plus
Query 109 aaaTAATTAATTAATCGTGATGAGGGCGTTGAATTCGCGGCTAGTTCTGATCGACATCAA 168
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAATAATTAATT-ATCGAGATGAGGGCGTTGAATTCGCGGCTAGTTCTGATCGACATCAA 61
Query 169 CAGCTCCTGGCAAGCTTCGCGCCGGTTAATCTCAGCCACCGCAACCGCTTTTTCATCTGA 228
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 CAGCTCATGGCAAGCTTCGCGCCGGTTAATCTCAGCCACCGCAACCGCTTTTTCATCCGA 121
Query 229 TTCCTCTTCCTCATTCCGTCGGACACGTGGTGCGCGTCAGAGAATCGCTTCATCGAAATC 288
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 122 TTCCTCTTCCTCATTCCGTCGAACACGTGGTGCGCGTCAGAGAATCTCTTCATCGAAATC 181
Query 289 CCCGGCGTCGTCACCGTCTCCTGTTCGGAGACCATCTGATGGATTCAGTTTCGATGTTCG 348
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 TCCGGCGTCGTCACCGTCTCCTGTACGGAGACCATCTGATGGATTCAGTTTCGATGTTCG 241
Query 349 GTCACCGTCATCTGA-T--TC--A-------TCGATCTCATCACGGAAGTCACCGACGAC 396
|||||||||| |||| | || | ||||||||||| ||||||||||||| |||
Sbjct 242 GTCACCGTCAGCTGATTCGTCAAACTCTGCGTCGATCTCATCTCGGAAGTCACCGAAGAC 301
Query 397 GGCTCCGCCTACGGTGGAGCTCGACGCTTTCCTAGAGATTCTTCCTCCGGCGACGAGGAA 456
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 302 GGCTCCGCCTACGGTGGAGCTTGACGCTTTCCTCGAGATTCTTCCTCCGGCAACGAGGAA 361
Query 457 GGAGCTTGTTAAGCACGAGGCGATTGAGGAATTGATCGAAGTAGTGATGGATTTAGGGAG 516
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 362 GGAGCTAGTTAAGCACGAGGCGATTGACGAATTGATCGAAGTGGTGATGGATTTAGGGAG 421
Query 517 AAAGCCACTTGCTAGATTCCCTTCCGGCGATTGGGTGATCTCAGAGCAGCCTGTGACACA 576
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 422 AAAGCCACTTGCTAGATTCCCTTCCGGTGATTGGGTGATCTCAGAGCAGCCTGTGACACA 481
Query 577 CCAGGATCTGGAGCTTGCGGTATCAAAGGTTGGTGATTTTTCGGATGATAACCGATCCGG 636
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 482 CCAGGATCTGGAGCTTGCGGTATCAAAAGTTGGCGATTTTTCAGATGATAACCGATCGGG 541
Query 637 GATTGACAGATCTTTGCATCGTATAAGCGCTATACGTAATCGCAAACTGCAAGTAATTGG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GATTGACAGATCTTTGCATCGTATAAGCGCTATACGTAATCGCAAACTGCAAGTAATTGG 601
Query 697 TCTAACATGTCGAGTGGGTCGAGTAGTCTCTGGAAGTGCAGAAATTATAAGAGACTTGAT 756
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 602 TCTAACATGTCGAGTGGGTCGAGTAGTATCTGGAAGTGCAGAGATTATAAGAGATTTGAT 661
Query 757 TGAAGGAGGAGGATCCATCTTGGTCATTGGATCTCCTGGAGTTGGCAAAACAACTTTAAT 816
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 662 AGAAGGAGGAGGATCCATCTTGGTCATAGGATCTCCTGGAGTTGGCAAAACAACTTTAAT 721
Query 817 CAGAGAAATTGCACGGATGTTAGCTGATGAACACAGGAAACGTGTAGTGATTGTTGACAC 876
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CAGAGAAATCGCACGGATGTTAGCTGATGAACACAGGAAACGTGTAGTGATTGTTGACAC 781
Query 877 GTCAAATGAGATTGGAGGTGATGGTGATGTTCCTCATTCTGGAATTGGTCGTGCCAGGCG 936
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 782 GTCAAATGAGATTGGAGGTGATGGTGATGTTCCTCATTCTGGAATTGGCCGTGCCAGGCG 841
Query 937 GATGCAAGTTCCAAATGTGAATTTACAGCACGATGTTATGATTGAGGCGGTTGAGAATCA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GATGCAAGTTCCAAATGTGAATTTACAGCACGATGTTATGATTGAGGCGGTTGAGAATCA 901
Query 997 TATGCCTGAGACAATCATCATTGACGAGATAGGAACTGAGCTTGAAGCTTTAGCTGCTAG 1056
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 TATGCCTGAGACAATCATCATCGACGAGATAGGAACTGAGCTTGAAGCTTTAGCTGCTAG 961
Query 1057 CACTATTGCTCAACGAGGTGTTCAGCTTGTTGCAACTGCTCATGGGATGACTATAGACAA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CACTATTGCTCAACGAGGTGTTCAGCTTGTTGCAACTGCTCATGGGATGACTATAGACAA 1021
Query 1117 CATAATCAAAAATCCTTCTTTGCAGATTCTTATTGGTGGAATTGAGAGTGTGACTCTTGG 1176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1022 CATAATCAAAAATCCTTCTTTGCAAATTCTTATTGGTGGAATTGAGAGTGTGACTCTTGG 1081
Query 1177 TGATGAAGAAGCAAGGAAAAGAAAAGTGCAGAAGACAATTCTTGAAAGAAAAGGACCTCC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TGATGAAGAAGCAAGGAAAAGAAAAGTGCAGAAGACAATTCTTGAAAGAAAAGGACCTCC 1141
Query 1237 GACATTCACTTGTGCTGTAGAGATGATATCGAGAACTGAGTGTCGTGTTCATCAAAGACT 1296
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CACATTTACTTGTGCTGTAGAGATGATATCGAGAACTGAGTGTCGTGTTCATCAAAGACT 1201
Query 1297 AGATGTTACCGTTGATGCTATACTAGCTGGGAAATCCGCTCCATTTGAGATCCGTCAAAT 1356
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1202 AGATGTCACCGTTGATGCTATACTAGCTGGGAAATCCGCCCCATTTGAGATCCGTCAAAT 1261
Query 1357 TCGTGGCGAAGACGATGTTCCTCATAAGTTAGTGACTCCCATTCCTTTGGAGAACCTTGA 1416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1262 TCGTGGCGAAGACGATGTTCCTCATAAGTTAGTGACTCCCATTCCTTTGGAGAAACTTGA 1321
Query 1417 AGAGGAGCCTGCACCATTGCTCAACAGAGATTTCGTAAGTGAATTGCTGTCTGACGATGA 1476
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1322 AGAGGAGCCTGCACCATTGCTCAACAGAGATTTCGTAAGTGAAGTGCTGTCTGACGATGA 1381
Query 1477 AGATGAAGATTTTCTTCTCATTCGGTCTAATAAGGCCAGAAGTAACACATACACGAGCCC 1536
||||||||||| ||||| ||| | || |||||||||||| ||||||||||||||||||||
Sbjct 1382 AGATGAAGATTCTCTTCCCATACAGTATAATAAGGCCAGCAGTAACACATACACGAGCCC 1441
Query 1537 AAGAAGCTCACCGGTTCATGTGTATACTTACAATGTCCTTGAAGCTGATCTCCTCCAAGT 1596
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1442 AAGAAGCTCACCGGTTCATGTTTATACTTACAATGTCCTTGAAGCTGATCTCCTTCAAGT 1501
Query 1597 AGCTGAAGTTATGGGTCTAGACGACGAAATAGAAGTGACAGATGATGTTGGAGAAGCAGA 1656
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1502 AGCCGAAGTTATGGGCCTAGATGACGAAATAGAAGTGACAGATGATGTTGGGGAAGCAGA 1561
Query 1657 TGTCATTCTAGCCTCAAGTTCTGAATTGAAACAGAATTCATCAATCCGTCGTGTTGCCAA 1716
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1562 TGTCATTCTAGCCTCTAGTTCTGAATTGAAACAAAATTCGTCGATCCGTCGTGTTGCCAA 1621
Query 1717 ATTACACAAGCTACCGATATTTGTCATTAAGTCAACTACTATGGCTCAGATGGTGAAGGC 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 ATTACACAAGCTACCGATATTTGTCATTAAGTCAACTACTATGGCTCAGATGGTGAAGGC 1681
Query 1777 AGTCCGAATGATCCTTGGAAGGGAATCATTTGGCTCAGCCCCT-AAAGCCATAGAAAAAT 1835
||||||||||||||||||||| |||||||||||||| |||||| ||| | ||||| ||||
Sbjct 1682 AGTCCGAATGATCCTTGGAAGAGAATCATTTGGCTCTGCCCCTGAAAAC-ATAGAGAAAT 1740
Query 1836 CTTCTGTTGATGATATCGAGATCAAAGATGATGCTCCTGAGAGCAAACCCAGTTTAGAAG 1895
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1741 CTTCTGTTGATGATATCGAGATCAAAGGTGATGCTCCCGAGAGCAAACCCAGTTTAGAAG 1800
Query 1896 AACTCGATGCCCTTGAGGAAGTCCGTCTAGCAATCGAATATATTGTAATCCCGGGAGGTG 1955
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1801 AACTTGATGCCCTCGAGGAAGTCCGTCTAGCAATAGAATATATTGTAATCCCGGGAGGTG 1860
Query 1956 AACCAGTGGAGCTTCTTCCTAGACGATCAGATATAATAGTTCGGCAGCTAGAGCTGGTGG 2015
||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1861 AACCAGTGGAGCTTCTTCCTAGACGGTCAGACATAATAGTTAGGCAGCTAGAGCTGGTGG 1920
Query 2016 AGAGTTACCAACTCGCAGTTGAGAACCTCGGCACTCACCTTAATCCGCGCCTTCAGATTC 2075
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1921 AGAGTTACCAACTCGCCGTTGAGAACCTCGGCACTCATCTTAATCCGCGCCTTCAGATTC 1980
Query 2076 TTCCTCGCCGATCAACCAAGAAGACGTTGACATCTTCATCCCCCCAAAAATCAGCAGATG 2135
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 1981 TTCCTCGCCGATCAACCAAGAAGACGTTGTCATCTTCATCCCCTCAAAAAGCAGCAGATG 2040
Query 2136 GTAGCATGGGGACTACGGGTACTCGTCTTCCTTTCCTTAAGGATTGACATGTCTGACTTC 2195
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2041 ATAGCATGGGGACTACGGGTACTCGTCTTCCTTTCCTTAAGGATTGACATCTCTGACTTC 2100
Query 2196 AGCATAT 2202
|||||||
Sbjct 2101 AGCATAT 2107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92140302655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5