BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10840.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317881 jgi|Araly1|317881|fgenesh1_pm.C_scaffold_3000897 1997 0.0
> Ahg317881 jgi|Araly1|317881|fgenesh1_pm.C_scaffold_3000897
Length=1410
Score = 1997 bits (1081), Expect = 0.0
Identities = 1314/1422 (92%), Gaps = 33/1422 (2%)
Strand=Plus/Plus
Query 10 ATGAATTTAAACACCACATGCATCTTCTTTTTGAACCAACCAAAGCAGACTCTCTCAACA 69
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 ATGAATTTAAACACCACATGCATCTTCTTTTTAAACCAACCAAAGCAGATTCTCTCAACA 60
Query 70 ---------TTA---TCTCTCAGCGACAAGTTTAGTTCAGATTCCTCTA-GAACCCATTT 116
||| ||||||| ||||||| |||||| ||||||||| | ||||||||||
Sbjct 61 TTCGCTTCCTTATCCTCTCTCAACGACAAGCTTAGTTTAGATTCCTC-ACGAACCCATTT 119
Query 117 TCAGATGTCTCGTCAGATTTCCGGCCAACCCTCTCGCCGTCTCATCGTCTCCAATGCTG- 175
||||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 120 TCAGATGTCTCACCGGATCTCTGGCCAACCCTCTCGTCGTCTCATCGTCTCCAATGCTGC 179
Query 176 --CTTCTTCTCCTTCTCTCTCTGGTGGCTTCCCAGATGCTGGAGCACATAGTAAAGAGGA 233
|||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||
Sbjct 180 TTCTTCTTCTCCTTCTCTCTCTGGCGGCTTCCCAGATGATGGAGCTCAGGGTAAAGAGGA 239
Query 234 GATGGAAGCTGAAACAGAACAGGATCCAATGAACCTAGCTGATCCAGACAGTTGTTTCTG 293
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 240 GATGGAAGCTGAAACAGAACAGGATCCAATGAACTTAGCTGATCCAGACAGCTGTTTCTG 299
Query 294 TGAGTTTCAAGGTGTTCATATACACCACAAAGTGTTAGATCCACATACACTCTCTGATGA 353
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 300 TGAGTTTCAAGGTGTTCATATACACCACAAAGTGTTTGATCCACAGACACTCTCTGATGA 359
Query 354 TGTTTCAAACACAAGCCCT-CATGCTCAAGAAACACCAAAAACCAAGTTTCCGATGATTC 412
|||||||| | |||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 360 TGTTTCAACCCCAAG-CCTCCATGCTCAAGAAACACCAAAAACCGAGTTTCCGATGATTC 418
Query 413 TATTGCACGG-TTTCGGCGCTTCTGTGTTCTCCTGGAACAGAGTTATGAAGCCAT-TAGC 470
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 419 TATTGCACGGCTTT-GGCGCGTCTGTGTTCTCCTGGAACAGAGTTATGAAGCC-TCTGGC 476
Query 471 TCGTCTCGTTAGTTCAAAAGTTCTTGCCTTTGATAGACCAGCATTTGGTTTGACTTCTCG 530
||| ||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 477 TCGGCTCGTCCGTTCAAAAGTTCTGGCCTTTGATAGACCCGCATTTGGCTTGACTTCTCG 536
Query 531 GATTTTTCACCCGTTTAGTGGTGCTACCAATGATGCAAAACCATTGAATCCCTACTCCAT 590
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 GATTTTCCACCCGTTTAGTGGTACTACCAATGATGCAAAACCATTGAATCCCTACTCCAT 596
Query 591 GGTGTATTCCGTGCTCACTACGTTGTATTTCATCGATGTTCTTGCTGCCGATAAGGCGAT 650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 GGTGTATTCCGTGCTCACTACGTTGTATTTCATCGATTTTCTTGCTGCCGATAAGGCGAT 656
Query 651 TCTTGTGGGGCATTCTGCTGGTTGCCCTGTAGCTTTAGATGCTTACTTTGAAGCCCCGGA 710
||||||||| |||||||| ||||||||| ||||| ||||| |||||||||||||||| ||
Sbjct 657 TCTTGTGGGACATTCTGCAGGTTGCCCTATAGCTGTAGATTCTTACTTTGAAGCCCCAGA 716
Query 711 GCGTGTTGCTGCTCTCATTCTCGTCGCTCCAGCTATATTCGCTCCCCGTCCTGTGGCCAC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCGTGTTGCTGCTCTCATTCTCGTCGCTCCAGCTATATTCGCTCCCCGTCCTGTGGCCAC 776
Query 771 AACTGATGCTGGAGAGAACCGTGACAAAGAAGCTCCCACTAGCAACTTTCTAGGGACTCT 830
||||||||||||||| ||||||| |||||||||||| || | ||||||||||||||||||
Sbjct 777 AACTGATGCTGGAGATAACCGTGGCAAAGAAGCTCCAACAACCAACTTTCTAGGGACTCT 836
Query 831 AGTTGAGTTAACCAAAGGTGTTATAAGAGCAGTATTGAGAGTGGTAACGGGAATGGCGAA 890
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 837 AGTTGAGTTAACCAAAGGCGTTATAAGAGCAATTTTGAGAGTGGTAACGGGAATGGCGAA 896
Query 891 TATGCTGAGTTCTCTCTACAAGAAAGCTTTAGCAGCTTTCCTCAGATCCTTCCTTGGAGT 950
|||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 897 TATGCTGAATTCTCTCTACAAGAAAGCTTTAGCAGCTTTCCTCAGGTCTTTTCTTGGAGT 956
Query 951 AATGCTGGTGAGGATGGCAATCAATAAATTTGGAGTAACAGCTGTTAGGAACGCGTGGTA 1010
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 957 AATGCTGGTCAGGATGGCAATCAATAAATTTGGAGTAACAGCTGTTAAAAACGCATGGTA 1016
Query 1011 TGACTCAAAACAAGTGACGGATCATGTCGTGCAGGGTTATACAAAGCCTCTTAA-AGCCA 1069
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct 1017 TGACTCGAAACAAGTGACGGATCACGTCGTCCAGGGTTATACGAAGCCTCT-AAGAGCCA 1075
Query 1070 AGGGATGGGACAAAGCTCTCGTGGAATTCACGGTGGCTACACTAACAGATAATAATGGCT 1129
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1076 AGGGATGGGACAAAGCTCTAGTGGAATTCACAGTCGCTACACTAACAGATAATAATGGCT 1135
Query 1130 CAGAGAAAAAA-CTCCCATTGTCTAAAAGGCTTCAAGAAATCAAATGCCCTGTTCTGATT 1188
||||||||||| | ||||||||| ||||| || |||||||||||||| || |||||||||
Sbjct 1136 CAGAGAAAAAAAC-CCCATTGTCGAAAAGACTCCAAGAAATCAAATGTCCGGTTCTGATT 1194
Query 1189 GTGACGGGAGATACGGACCGTATTGTGCCAGCATGGAACGCAGAGAGGCTGGCACGAGCC 1248
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 GTGACGGGAGATACAGACCGGATTGTGCCAGCTTGGAACGCAGAGAGGCTGGCACGAGCC 1254
Query 1249 ATACCGGGATCAGTGTTCGAAGTAATTAAGAAATGTGGTCATCTTCCTCAAGAGGAAAAA 1308
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATACCGGGATCGGTGTTCGAAGTAATTAAGAAATGTGGTCATCTTCCTCAAGAGGAAAAG 1314
Query 1309 CCAGATGAATTCATATCTATTGTTGCAAAGTTTCTAGGGAATGCTTTTGGAGGGTCACAA 1368
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCAGATGAGTTCATATCTATTGTTGCAAAGTTTCTAGGGAATGCTTTTGGAGGGTCACAA 1374
Query 1369 CAACAAGACGTGGACTTGAAGTTCCAAGGCATTGTATCATGA 1410
||| | ||||||||||||||||||| ||||||||||||
Sbjct 1375 CAA---G---TGGACTTGAAGTTCCAAGGGATTGTATCATGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5