BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10850.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928792 jgi|Araly1|928792|scaffold_301249.1 1236 0.0
> Ahg928792 jgi|Araly1|928792|scaffold_301249.1
Length=819
Score = 1236 bits (669), Expect = 0.0
Identities = 771/820 (94%), Gaps = 8/820 (1%)
Strand=Plus/Plus
Query 34 CGATCGATCTAAGGAGA---CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTA 90
||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CGATCGATCGAAGGAGACGGCGATGAAGATCTTCCACGTTCCTTGTCTACAAGACAACTA 60
Query 91 CTCTTATCTGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC 150
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CTCTTATCTGATAATCGATGAGAGCACGGGAGACGCGGCGGTTGTGGATCCAGTTGATCC 120
Query 151 GGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTAC 210
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 GGAGAAGGTGATCGCATCGGCTGAGCAGCACCAAGCTAAGATCAAGTTCGTACTCACCAC 180
Query 211 GCATCATCACTGGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATAT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GCATCATCACTGGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGAAAT 240
Query 271 CAAAGTATATGGAGGTTCTCTGGATAAGGTGAA-GGGTTGCACTGATGCGGTTGATAATG 329
||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 241 CAAAGTATATGGAGGTTCTCTGGATAAGGTGAAAGGGT-GCACTGATGCTGTTGATAATG 299
Query 330 GTGACAAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGTCACA 389
|||||||| || |||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 300 GTGACAAGTTGTCTTTGGGTCAGGATGTCAACATATTGGCTCTCCACACCCCTTGTCACA 359
Query 390 CCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCA 449
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 360 CCAAGGGTCACATTAGTTATTATGTTACCGGAAAAGAAGGAGAAAACCCAGCTGTGTTCA 419
Query 450 CCGGAGATACACTTTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGA 509
| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 420 CTGGAGATACCCTTTTTGTTGCTGGATGCGGGAAATTTTTCGAAGGGACAGCTGAACAGA 479
Query 510 TGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCG 569
|| || |||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 480 TGCATAAGTCATTGTGTGTGACTCTTGCTTCATTACCTAAACCAACACAGGTTTACTGCG 539
Query 570 GCCATGAGTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGA 629
|||| |||||||| || || ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 540 GCCACGAGTACACGGTGAAAAACTTGGAATTTGCTTTAACTGTGGAACCAAACAACGAGA 599
Query 630 AGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATCTTCCCACAATCC 689
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 AGATACAGCAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATCTTCCGACAATCC 659
Query 690 CTTCAACACTGGAGGAAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGA 749
|||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 660 CTTCAACACTAGAAGAAGAGCTCGAAACAAACCCATTTATGCGCGTTGATAAGCCAGAGA 719
Query 750 TACAGGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGA 809
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TACAGGAGAAACTCGGTTGCAAGTCGCCAATTGATACACTGAGGGAAGTTCGGAACAAGA 779
Query 810 AGGATCAGTGGAGGGGATGATGATAAATGGAGAGCTTCTT 849
||||||||||||||||||||| | || |||||| ||||||
Sbjct 780 AGGATCAGTGGAGGGGATGAT-A-AA-TGGAGAACTTCTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5