BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10912.1 Length=1109 Score E Sequences producing significant alignments: (Bits) Value Ahg478427 jgi|Araly1|478427|fgenesh2_kg.3__1128__AT3G10910.1 1352 0.0 > Ahg478427 jgi|Araly1|478427|fgenesh2_kg.3__1128__AT3G10910.1 Length=1008 Score = 1352 bits (732), Expect = 0.0 Identities = 942/1033 (91%), Gaps = 56/1033 (5%) Strand=Plus/Plus Query 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60 Query 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215 ||||||| || ||||||||||||||||||||| | | || |||| |||||||| || Sbjct 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGAAAA 119 Query 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274 |||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||||||| Sbjct 120 AAAGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179 Query 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328 | | |||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239 Query 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCtttttttttCCTTCTCTCCTCTGCTT 387 || | |||| | ||| ||||| | | ||| | ||||||||||||||| Sbjct 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282 Query 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342 Query 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402 Query 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462 Query 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522 Query 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686 ||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| Sbjct 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581 Query 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641 Query 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806 ||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701 Query 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761 Query 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923 |||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821 Query 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880 Query 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035 |||||||||||||||||||||||||||||| | | |||||| | |||||||||||| Sbjct 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGTTTTTTTGTGTGTGCAAAC 940 Query 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095 |||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995 Query 1096 CTTGAAATCAAGC 1108 ||||||||||||| Sbjct 996 CTTGAAATCAAGC 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41325242028 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5