BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10920.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478433 jgi|Araly1|478433|fgenesh2_kg.3__1134__AT3G10920.1 1314 0.0
Ahg920731 jgi|Araly1|920731|scaffold_102012.1 65.8 6e-10
> Ahg478433 jgi|Araly1|478433|fgenesh2_kg.3__1134__AT3G10920.1
Length=960
Score = 1314 bits (711), Expect = 0.0
Identities = 825/879 (94%), Gaps = 12/879 (1%)
Strand=Plus/Plus
Query 34 GAAGGAGAAACAAATCTT-CATTCCAACAATGGCGATTCGTTGTGTAGCGAGTAGAAAAA 92
|||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 20 GAAGGAGAAA-GAATCTTCCAAAGCAACAATGGCGATTCGTTGTGTAGCGAGTAGAAAAA 78
Query 93 CCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGA-TCAGAGGGATTCAGACT 151
|||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||
Sbjct 79 CCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTCTT-AGGATTCAGAGGGGTTCAGACT 137
Query 152 TTTACGCTTCCTGATCTTCCTTACGATTATGGCGCATTGGAACCGGCCATTAGTGGAGAG 211
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 138 TTTACGCTTCCTGATCTTCCTTACGATTATGGCGCATTGGAACCGGCGATTAGTGGAGAG 197
Query 212 ATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCT 257
Query 272 CTTGAGCAGCTTGATCAAGCTGTGAACAAGGGAGATGCTTCCACTGTTGTTAAGTTGCAG 331
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 258 CTTGAGCAGCTGGATCAGGCTGTGAATAAAGGAGATGCTTCCACTGTTGTTAAGTTGCAG 317
Query 332 AGCGCCATCAAATTCAACGGCGGAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTT 391
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGCGCTATCAAATTCAACGGCGGAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTT 377
Query 392 GCTCCT-TCCAGTGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGA 450
|||||| | || |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 378 GCTCCTGT-CAATGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGCAGCGCCATTGA 436
Query 451 CGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGT 510
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 437 TACTCACTTTGGCTCTCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAAGGTGCTGCTCT 496
Query 511 GCAAGGCTCAGGATGGGTGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGA 570
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 497 GCAAGGCTCCGGATGGGTGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTTGTGGTTGA 556
Query 571 CACAACTGCCAATCAGGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGG 630
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 557 CACAACTGCCAATCAGGATCCATTGGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGG 616
Query 631 TATAGATGTTTGGGAGCACGCCTACTACTTGCAGTACAAAAATGTGAGGCCTGAGTATCT 690
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 617 TATAGATGTTTGGGAGCACGCCTACTACTTGCAGTACAAAAATGTGAGGCCGGAGTATCT 676
Query 691 GAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAATG 736
Query 751 CAACTGAATCGTTTACACGATGACATAAGGAGATGAACCAGTTCCAGCTCAGCTTTTGTT 810
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 737 CAACTGAATCGTT-ACACGATGACATAAGGAGAGGAACCAGTTCCAGCTCGGCTTT-GTT 794
Query 811 TT-AAGGTTGTCTGAAACAAACTTACAGTGTCTCTT-T--GGTTTTTAAGATTTGCTCAA 866
|| || |||||||||| ||||| |||| |||||||| | ||||||| || ||| |||||
Sbjct 795 TTTAAAGTTGTCTGAAGCAAACATACAATGTCTCTTCTTTGGTTTTTGAGTTTTACTCAA 854
Query 867 CTCAGCTGTGTGGTACGTTGTTTTACAATGAAAGTTTTC 905
|| || |||||||||||||||||| |||| |||| ||||
Sbjct 855 CTGAGTTGTGTGGTACGTTGTTTTTCAATAAAAGATTTC 893
> Ahg920731 jgi|Araly1|920731|scaffold_102012.1
Length=375
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 587 GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCT 624
|||||||||||||||||||||||||||||| |||||||
Sbjct 85 GATCCATTAGTGACAAAAGGAGGAAGCTTGATACCTCT 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5