BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10940.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478435 jgi|Araly1|478435|fgenesh2_kg.3__1136__AT3G10940.1 1441 0.0
> Ahg478435 jgi|Araly1|478435|fgenesh2_kg.3__1136__AT3G10940.1
Length=927
Score = 1441 bits (780), Expect = 0.0
Identities = 882/931 (95%), Gaps = 7/931 (1%)
Strand=Plus/Plus
Query 45 GAGAACGATGAGTGTGATTGGAAGCAAGAGCTGTATTTTCTCTGTGGCTAGATACACCCG 104
||| ||||||||||||||||||| ||| |||||||||||||| ||| ||| ||| ||||
Sbjct 1 GAGGACGATGAGTGTGATTGGAACCAAAAGCTGTATTTTCTCGGTGACTATATATTCCCG 60
Query 105 AGAAAATGAGAAAT-CTTCTTGCTTCACTTCTATCAACAAGAAATCTTCGCTTGATCTGA 163
|||||||||| | | ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 AGAAAATGAG-ATTGCTTCTTGCTTCACTTCTATCAACAAGAAATCGTCAATTGATCTGA 119
Query 164 GATTTCCCAGAAATCTGGCGGGAGTTTCCTGCAAATTCTCTGGAGAAAATCCAGGAACAA 223
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 GATTTCCCAGAAATCTGGCGGGAGTTTCCTGCAAAATCTCTGGAGAAAATCCAGGAACAA 179
Query 224 ATGGGGTTTCTCTTAGCTCCAAGAACAAAATGGAGGATTACAATACAGCTATGAAGAGAT 283
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATAAGGTTTCTCTGAGCTCCAAGAACAAAATGGAGGATTACAATACAGCTATGAAGAGAT 239
Query 284 TGATGAGAAGCCCTTATGAATATCATCATGATCTAGGTATGAACTATACATTGATAAGAG 343
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 TGATGAGGAGCCCTTATGAATATCATCATGATCTGGGTATGAACTATACATTGATAAGAG 299
Query 344 ATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGG 403
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGAACTTATCGTTGGGTCGCAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGG 359
Query 404 AACAGAATGTTGCTTACATACTTAACTTGCAGCAGGATAAGGACATTGAGTATTGGGGAA 463
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 360 AACAGAATGTTGCTTACATACTTAACTTGCAGCAGGACAAGGACATTGACTATTGGGGAA 419
Query 464 TCGATTTGGATTCCATTGTTAGAAGATGTAAGGAGCTTGGAATCCGTCACATGAGAAGGC 523
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TCGATTTGGATTCCATTGTTCGAAGATCTAAGGAGCTTGGAATCCGTCACATGAGAAGGC 479
Query 524 CTGCTAAAGATTTTGATCCACTTTCGTTGAGAAGCCAACTTCCAAAAGCTGTTTCTTCTT 583
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCGCTAAAGATTTCGATCCACTTTCGTTGAGAAGCCAACTTCCAAAAGCTGTTTCTTCTT 539
Query 584 TGGAATGGGCGGTTTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGG 643
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 540 TGGAATGGGCGGTTTCAGAAGGTAAAGGAAGAGTCTACGTGCATTGTTCAGCCGGACTGG 599
Query 644 GAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATCTTAACA 703
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 600 GAAGAGCTCCAGGGGTTTCGATTGCTTATATGTATTGGTTCTGCGACATGAACCTTAACA 659
Query 704 CGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAACAAAGGAGCCATCCGTG 763
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 CGGCTTATGACAATTTGGTATCAAAGCGTCCATGTGGGCCTAACAAAGGAGCCATCCGCG 719
Query 764 GTGCAACATATGATCTGGCTAAGAATGATCCCTGGAAAGAGCCCTTTGAGAGTCTCCCTG 823
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 GCGCAACATATGATCTGGCTAAGAACGATCCCTGGAAAGAGCCCTTTGAGAGTCTCCCTG 779
Query 824 AGAACGCATTCGAGGACATTGCAGATTGGGAAAGGAAGTTGATTCAAGAACGTGTTCGGG 883
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 AGAACGCATTCGAGGACATTGCCGATTGGGAAAGGAAGTTGATTCAAGAACGTGTTCGGG 839
Query 884 CCCTCCGTGGAACCTGAAAATCAGTA-ATTC-TGAGAATATGTATAATTTCGAATAAAAT 941
|||||||||||||||||||||||||| | | | | | ||||||||||||||||||||||
Sbjct 840 CCCTCCGTGGAACCTGAAAATCAGTATAG-CAT-ATA-TATGTATAATTTCGAATAAAAT 896
Query 942 GTAGACTTCTGTATATTTTAAAGCTACGGAT 972
|||||||||||||||| ||||||||| |||
Sbjct 897 CTAGACTTCTGTATATTCTAAAGCTACTGAT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5