BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11050.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478449 jgi|Araly1|478449|fgenesh2_kg.3__1150__AT3G11050.1 1476 0.0
Ahg887959 jgi|Araly1|887959|Al_scaffold_0467_1 1177 0.0
> Ahg478449 jgi|Araly1|478449|fgenesh2_kg.3__1150__AT3G11050.1
Length=973
Score = 1476 bits (799), Expect = 0.0
Identities = 926/984 (94%), Gaps = 22/984 (2%)
Strand=Plus/Plus
Query 54 ATGTTGCACAAGGCTTCTCCCGctctctctctctTGAGCTCCGGCTACACCGGCGGTGGA 113
||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGTTGCTCAAGGCTTCTCCCGCTCTCTCTCTCTTGAGCT----C--CACCGGCGGTGGA 54
Query 114 AATCTGTTTCCTCCGTCGAGAAATTCGTCGAATCTTCTGTTTTCTCCGAGTGGATCCAGG 173
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 55 AATCTCTTTCCGCCGTCGAGAAATTCGTCGAATCTTCTGTTTTCTCCGAGTGGATCTAGG 114
Query 174 TTTTCTGTTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGTATTCGAA 233
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TTTTCTGTTAAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGTATTCGAA 174
Query 234 CCTTTTGAGGAGGTGAAGAAAGAAATGGAGCTCGTTCCCACTACCCCTTTTGTTTCTCTC 293
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 175 CCTTTTGAGGAGGTGAAGAAAGAATTGGAGCTCGTTCCCACTACCCCTTTTGTTTCTCTC 234
Query 294 GCTCGCCACAAGTTCTCCGACGATTCTGAATCTGCCATCAACGATCAGATCAACGTGGAG 353
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 235 GCTCGCCACAAGTTCTCAGAAGATTCAGAATCTGCCATCAACGATCAGATCAACGTGGAG 294
Query 354 TACAACGTCTCGTATGTCTACCATGCCCTGTATGCCTACTTTGACAGAGACAATGTCGGC 413
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 TACAATGTCTCCTATGTCTACCATGCCCTGTATGCTTACTTTGACAGAGACAATGTCGGC 354
Query 414 TTGAAAGGTTTCGCCAAGTTTTTTAACGATTCGAGTCTTGAAGAACGAGGTCATGCTGAG 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTGAAAGGTTTCGCCAAGTTCTTTAACGATTCGAGTCTTGAAGAACGAGGTCATGCTGAG 414
Query 474 ATGTTTATGGAGTATCAGAACAAGCGTGGTGGGAGAGTGAAGCTGCAGTCTATTTTGATG 533
| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 415 AAGTTTATGGAGTATCAGAACATGCGCGGTGGGAGAGTGAAGCTGCAGTCTATTTTGATG 474
Query 534 CCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGAGCTTGCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGAGCTTGCA 534
Query 594 TTGTCTTTGGAGAAACTTACAAATGAAAAGCTTCTGAAGTTACAAAGTGTTGGTGTGAAG 653
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 535 CTGTCTTTGGAGAAACTTACTAATGAAAAGCTTCTGAAGTTGCAAAGTGTTGGTGTGAAG 594
Query 654 AACAATGATGTTCAGCTGGTTGATTTTGTAGAATCTGAGTTTCTAGGCGAGCAGGTCGAA 713
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 595 AACAATGATGTTCAGCTGGTTGATTTTGTAGAATCCGAGTTTCTCGGCGAGCAGGTTGAA 654
Query 714 GCTATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGGTCATGGA 773
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCCATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGGTCATGGA 714
Query 774 GTGTGGCATTTTGATCAAATGCTTCTCAATGATGAGGTTTAAGGAAGGAGAGTTCAGCTT 833
|||||||||||||||||||||||||| ||||| | | |||||||||| ||||||||||||
Sbjct 715 GTGTGGCATTTTGATCAAATGCTTCTTAATGA-G-G-TTTAAGGAAGAAGAGTTCAGCTT 771
Query 834 CTGAGTTTGATGACAATCTTCCTTGTGCTATATGGCACCGTTCTATCTCTATAACGACGT 893
|||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 772 TTGAGTTAGCTCACAATCTTCCTTGTGCTATACGGCACCGTTCTATCTCTATAACGACGT 831
Query 894 CTCTAAGTTTGGTCGGAGAAAAGT-GTTCTTGCTCGTTCTTTCTTTTCTTTGTTTTTGGT 952
|||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||| |||
Sbjct 832 CTCTAAGTTTGGTCGGGGAAAAGTTGTT-TTGCTCGTTCTTTGTTTTCTTTGTTTT-GGT 889
Query 953 TAACCGAATGCTTGTGAGT-GTG--T---A---CTTAATAA-TGTAACTCGTAGTCTGAT 1002
||||||||||||| |||| ||| | | |||||||| ||||||||||||||| ||
Sbjct 890 CAACCGAATGCTTGAGAGTTGTGAGTGGTAATACTTAATAAATGTAACTCGTAGTCTCAT 949
Query 1003 AATAAATGCAAGTCCCACTGTTTC 1026
|||||||||||||||||||| |||
Sbjct 950 AATAAATGCAAGTCCCACTGCTTC 973
> Ahg887959 jgi|Araly1|887959|Al_scaffold_0467_1
Length=765
Score = 1177 bits (637), Expect = 0.0
Identities = 720/759 (95%), Gaps = 10/759 (1%)
Strand=Plus/Plus
Query 56 GTTGCACAAGGCTTCTCCCG--ctctctctctctTGAGCTCCGGCT---ACACC-G--GC 107
||||| ||| |||||||||| ||||||||||||||||||| |||| | || | ||
Sbjct 1 GTTGCTCAAAGCTTCTCCCGCTCTCTCTCTCTCTTGAGCTCTGGCTCCGGCTCCGGCAGC 60
Query 108 GGTGGAAATCTGTTTCCTCCGTCGAGAAATTCGTCGAATCTTCTGTTTTC-TCCGAGTGG 166
|| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct 61 GGAGGAAATCTGTTTCCGCCGTCGAGAAATTCGTCGAATCTTCT-ATTTCATCCGAGTGG 119
Query 167 ATCCAGGTTTTCTGTTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGT 226
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCTAGGTTTTCTATTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGT 179
Query 227 ATTCGAACCTTTTGAGGAGGTGAAGAAAGAAATGGAGCTCGTTCCCACTACCCCTTTTGT 286
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 ATTCGAACCATTTGAGGAGGTGAAGAAAGAACTGGAGCTCGTTCCCACTACCCCTTTTGT 239
Query 287 TTCTCTCGCTCGCCACAAGTTCTCCGACGATTCTGAATCTGCCATCAACGATCAGATCAA 346
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTCTCTCGCTCGCCACAAGTTCTCTGACGATTCTGAATCTGCCATCAACGATCAGATCAA 299
Query 347 CGTGGAGTACAACGTCTCGTATGTCTACCATGCCCTGTATGCCTACTTTGACAGAGACAA 406
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGTGGAGTACAATGTCTCCTATGTCTACCATGCCCTGTATGCTTACTTTGACAGAGACAA 359
Query 407 TGTCGGCTTGAAAGGTTTCGCCAAGTTTTTTAACGATTCGAGTCTTGAAGAACGAGGTCA 466
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 360 TGTCGGCTTGAAAGGTTTCGCCAAGTTCTTCAACGATTCGAGTCTTGAAGAAAGAGGTCA 419
Query 467 TGCTGAGATGTTTATGGAGTATCAGAACAAGCGTGGTGGGAGAGTGAAGCTGCAGTCTAT 526
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 420 TGCTGAGAAGTTTATGGAGTATCAGAACATGCGCGGTGGGAGAGTGAAGCTGCAGTCTAT 479
Query 527 TTTGATGCCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGATGCCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGA 539
Query 587 GCTTGCATTGTCTTTGGAGAAACTTACAAATGAAAAGCTTCTGAAGTTACAAAGTGTTGG 646
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 540 GCTTGCACTGTCTTTGGAGAAACTTACTAATGAAAAGCTTCTGAAGTTGCAAAGTGTTGG 599
Query 647 TGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGAATCTGAGTTTCTAGGCGAGCA 706
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 600 TGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGAATCCGAGTTTCTCGGCGAGCA 659
Query 707 GGTCGAAGCTATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGG 766
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTTGAAGCCATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGG 719
Query 767 TCATGGAGTGTGGCATTTTGATCAAATGCTTCTCAATGA 805
|||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATGGAGTGTGGCATTTTGATCAAATGCTTCTCAATGA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5