BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11170.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478456 jgi|Araly1|478456|fgenesh2_kg.3__1157__AT3G11170.1 2451 0.0
Ahg487353 jgi|Araly1|487353|fgenesh2_kg.6__487__AT5G05580.1 1158 0.0
> Ahg478456 jgi|Araly1|478456|fgenesh2_kg.3__1157__AT3G11170.1
Length=1631
Score = 2451 bits (1327), Expect = 0.0
Identities = 1511/1595 (95%), Gaps = 32/1595 (2%)
Strand=Plus/Plus
Query 109 aaaaaataaaaaGAGAGACTTTTCAC-TCTGGGGAGAGAGCTCAAGTTCTAATGGCGAAC 167
|||||| ||| |||||| |||||| | ||||||||||||||| || |||||||||||||
Sbjct 53 AAAAAA-AAAGAGAGAGTCTTTTCTCTTCTGGGGAGAGAGCTGGAGCTCTAATGGCGAAC 111
Query 168 TTGGTCTTATCAGAATGTGGTATACGACCTCTCCCCAGAATCTACACAACACCCAGATCC 227
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 112 TTGGTCTTATCAGAATGTGGTTTAAGACCTCTCCCCAGAATCTACACAACACCCAGATCC 171
Query 228 AATTTCCTCTCCAACAACAACAAATTCAGACCATCACTTTCTTCTTCTTCTTACAAAACA 287
|||||| |||| |||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct 172 AATTTCGTCTCTAACAACAACAAATTCAGACCATCA----C--CTTCTTCTTAC-AAA-A 223
Query 288 TCATCATCTCCTCT-GTCTTTTGGTCTGAATTCACGAGATGGGTTCACGAGGAATTGGGC 346
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 224 -CATCATCTCCTCTCG-CTTTTCGTCTGAATTCACGAGATGGGTTCACGAGGAATTGGGC 281
Query 347 GTTGAATGTGAGCACACCATTAACGACACCAATATTTGAGGAGTCTCCATTGGAGGAAG- 405
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 282 GTTGAATGTGAGCACACCGTTAACGACACCGATATTTGAGGAGTCTCCATTAGAGGAAGA 341
Query 406 A-T---A-AT-A-AA-CAGAGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCTGA 457
| | | || | || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 342 ATTCAAAGATAATAAGCAAAGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCGGA 401
Query 458 TATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGTCTTTGAGTTA 517
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 402 TATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGTCGTTGAGTTA 461
Query 518 TGTCGTCAGAGACGTCGCTATCGTCTTTGCATTGGCTGCTGGAGCTGCTTACCTCAACAA 577
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 462 TGTCGTCAGAGATGTCGCTATCGTCTTTGCTTTGGCTGCTGGAGCTGCTTACCTCAACAA 521
Query 578 TTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGT 581
Query 638 TCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGT 697
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 582 TCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAGGTTGAACAGTGTGGT 641
Query 698 CGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGTCACAG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 642 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGCCACAG 701
Query 758 AACTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCATCCTATGTCTGA 817
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 702 AACTCACCACCAGAACCATGGACATGTCGAGAACGATGAATCTTGGCATCCTATGTCTGA 761
Query 818 GAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGT 877
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 762 GAAAATCTACAAGACTTTGGACAAACCGACTAGATTCTTTAGATTTACACTGCCTCTCGT 821
Query 878 GATGCTTGCATACCCTTTCTACTTGTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTA 937
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GATGCTCGCATACCCTTTCTACTTGTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTA 881
Query 938 CCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGC 997
|||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 882 CCATCCGGACAGCGACTTGTTCCTCCCTAAAGAGAAAAAAGATGTCCTTACTTCTACTGC 941
Query 998 TTGTTGGACTGCAATGGCTGCTCTGCTTGTTTGTCTCAACTTCACAATCGGTCCAATTCA 1057
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 942 TTGTTGGACTGCAATGGCTGCTCTGCTTGTCTGTCTCAACTTCGCAATCGGTCCAATTCA 1001
Query 1058 AATGCTCAAACTTTATGGAATTCCTTACTGGATAAATGTAATGTGGTTGGACTTTGTGAC 1117
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1002 AATGCTCAAACTTTATGGAATTCCTTATTGGATAAATGTAATGTGGTTGGACTTTGTGAC 1061
Query 1118 TTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTACCGTGGCAAGGAGTGGAG 1177
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1062 TTACCTGCATCACCATGGCCATGAAGATAAGCTTCCTTGGTACCGTGGAAAGGAATGGAG 1121
Query 1178 TTACCTGAGAGGAGGACTTACAACATTGGATCGTGACTACGGATTGATCAATAACATCCA 1237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1122 TTACCTGAGAGGAGGACTTACAACATTGGACCGTGACTACGGATTGATCAATAACATCCA 1181
Query 1238 TCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1297
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TCACGACATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1241
Query 1298 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAA 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAA 1301
Query 1358 GTCTGGACCGTTGCCATTACATTTACTGGAAATTCTAGCGAAAAGTATAAAAGAAGATCA 1417
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1302 GTCTGGACCATTGCCATTACATTTACTGGAAATTCTAGCAAAAAGTATTAAAGAAGATCA 1361
Query 1418 TTACGTGAGCGACGAAGGAGAAGTTGTATACTATAAAGCAGATCCAAATCTCTATGGAGA 1477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TTACGTGAGCGACGAAGGAGATGTTGTATACTATAAAGCAGATCCAAATCTCTATGGAGA 1421
Query 1478 GGTCAAAGTAAGAGCAGATTGAAATGAAGCAGGCTTGAGATTGAAGTTTTTTCTATTTCA 1537
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1422 AGTCAAAGTAAGAGCAGATTGAAATGAAGCAGGCTTGCGATTGAAGTTTTT-CTATTTCA 1480
Query 1538 GACCAGCTGATTTTTTGCTTACTGTATCAATTTATTGTGTCACCCACCAGAGAGTTAGTA 1597
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GACCAGCTGATTTTTTGTTTACTGTATCAATTTATTGTGTCACCCACCAGAGAGTTAGTA 1540
Query 1598 TCTCTGAATACGATCGATCAGATGGAAACAACAAATTTGTTTGCGATACTGAAGCTATAT 1657
||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1541 TCTCTGAATACGATC-A---GATGGAAACAACAAATTTGTTTTCGATACTGAAGCTATAT 1596
Query 1658 AT-A-CCA-TA--CATTGCATTATCTTAGATACAT 1687
| | ||| || |||||||||||||||||| |||
Sbjct 1597 ACCAACCAATATACATTGCATTATCTTAGATTCAT 1631
Score = 113 bits (61), Expect = 4e-24
Identities = 85/95 (89%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 1690 AAATTCTAGCAAAAAGTATAAAAGAAGATCATTACGTGAGCGACGAAGGAGATGTTGTAT 1749
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AAATTCTAGCAAAAAGTATTAAAGAAGATCATTACGTGAGCGACGAAGGAGATGTTGTAT 1390
Query 1750 ATATACTACAAATTAAGCAGATCCAAATCTCTATG 1784
| || || || |||||||||||||||||||
Sbjct 1391 AC-TA-TA-AA-----GCAGATCCAAATCTCTATG 1417
> Ahg487353 jgi|Araly1|487353|fgenesh2_kg.6__487__AT5G05580.1
Length=1634
Score = 1158 bits (627), Expect = 0.0
Identities = 948/1101 (86%), Gaps = 29/1101 (3%)
Strand=Plus/Plus
Query 388 AGTCTCCATTGGAGGAAGATAATAAACAGAGATTCGATCCAGGTGCGCCTCCTCCGTTCA 447
||||||||| || ||||| | | || |||||||| |||||||| |||||||| ||||
Sbjct 394 AGTCTCCATCCGAAGAAGACACT-GAC--AGATTCGACCCAGGTGCACCTCCTCCCTTCA 450
Query 448 ATTTAGCTGATATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGT 507
|||| || ||||| |||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 451 ATTTGGCAGATATAAGAGCAGCCATACCTAAGCATTGTTGGATTAAGAATCCATGGATGT 510
Query 508 CTTTGAGTTATGTCGTCAGAGACGTCGCTATCGTCTTTGCATTGGCTGCTGGAGCTGCTT 567
| |||||||||| |||||||| || ||| ||||||||| |||||||||| ||||||||
Sbjct 511 CAATGAGTTATGTTGTCAGAGATGTTGCTGTCGTCTTTGGATTGGCTGCTTTAGCTGCTT 570
Query 568 ACCTCAACAATTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGG 627
|| ||||||||||| || | ||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 571 ACTTCAACAATTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGG 630
Query 628 CTCTCTTTGTTCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGA 687
|||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||| | |||
Sbjct 631 CTCTCTTTGTCCTTGGCCATGACTGCGGACACGGTAGCTTCTCGAATGATCCGAGGCTGA 690
Query 688 ACAGTGTGGTC-GGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGA 746
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 691 ACAGTGTGG-CTGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGA 749
Query 747 ATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCAT 806
||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 750 ATTAGCCACAGAACTCACCACCAGAACCATGGGCATGCCGAGAATGACGAATCATGGCAT 809
Query 807 CCTATGTCTGAGAA-AATCTACAATACTTTGGACAAGCCGACT-AGATTCTTTAGATTTA 864
||| || |||| || |||||||| | |||||| || ||||| | | | ||||| ||||
Sbjct 810 CCTTTGCCTGA-AAGCATCTACAAGAATTTGGAAAAAACGACTCA-AATGTTTAGGTTTA 867
Query 865 CACTGCC-TCTCGTGATGCTTGCATACCCTTTCTACTTGTGGGCTC-GAAGTCCGGGGAA 922
||||||| | || ||||| ||||| |||||||| |||| || | ||||||| |||||
Sbjct 868 CACTGCCTTTTC-CAATGCTCGCATATCCTTTCTATTTGT-GGAACAGAAGTCCAGGGAA 925
Query 923 A-AAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAG-AGAAAGGAT 980
| || ||||||||||| ||||| |||||||||||||| || || |||||| ||||| |||
Sbjct 926 ACAA-GGTTCTCATTATCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAA-GAT 983
Query 981 GTCCTCACTTCTACTGCTTGTTGGACTGCAATGGCTGCTCTGCTTGTTTGTCTCAAC-TT 1039
|| | || || ||||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 984 GTTGTGACATCAACTGCCTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTT 1043
Query 1040 CACAATCGGTCCAATTCAAATGCTCAAACTTTATGGAATTCCTTACTGGATAAATGTAAT 1099
| ||||||||||| |||||||||||||| ||||| || |||||||||||| ||||||
Sbjct 1044 GTC-ATCGGTCCAATCCAAATGCTCAAACTATATGGCATCCCTTACTGGATATTTGTAAT 1102
Query 1100 GTGGTTGGACTTTGTGACTTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTA 1159
|||||||||||| || |||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1103 GTGGTTGGACTTCGTCACTTACTTGCATCACCATGGACATGAAGACAAGCTTCCTTGGTA 1162
Query 1160 CCGTGGCAAGGAGTGGAGTTACCTGAGAGGAGGACTTACAACATTGGATCGTGACTACGG 1219
|||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1163 CCGTGGAAAGGAATGGAGTTACCTGAGAGGAGGGCTCACAACATTGGATCGTGATTACGG 1222
Query 1220 ATTGATCAATAACATCCATCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCA 1279
|| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1223 ATGGATCAATAACATCCACCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCA 1282
Query 1280 GATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTA 1339
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1283 GATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGAAAGTA 1342
Query 1340 TTACAGGGAGCCTGATAAG-TCTGGACCGT-TGCCA-TTACATTTACTGGAAATTCT-AG 1395
||||| || || || || |||||||| | ||||| || || ||||||| || || |
Sbjct 1343 CTACAGAGAACC-GAAAAACTCTGGACC-TCTGCCACTT-CACTTACTGGGAAGCCTCAT 1399
Query 1396 CGAAAAGTATAAAAGAAGATCATTACGTGAGCGACGA-AGGAGAAGTTGTATACTATAAA 1454
|||||||| ||| |||| |||| ||| ||| | | |||||| || || |||||| |
Sbjct 1400 A-AAAAGTATGAAACAAGACCATTTCGTAAGCAAT-ACAGGAGATGTCGTGTACTATGAG 1457
Query 1455 GCAGATCCAAATCTCTATGGA 1475
||||||||||| ||| |||||
Sbjct 1458 GCAGATCCAAAACTCAATGGA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5