BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11410.1 Length=1639 Score E Sequences producing significant alignments: (Bits) Value Ahg478478 jgi|Araly1|478478|fgenesh2_kg.3__1179__AT3G11410.1 1940 0.0 Ahg907619 jgi|Araly1|907619|Al_scaffold_0002_700 207 2e-52 Ahg894853 jgi|Araly1|894853|Al_scaffold_0006_2849 189 6e-47 Ahg925214 jgi|Araly1|925214|scaffold_200775.1 152 7e-36 Ahg897463 jgi|Araly1|897463|Al_scaffold_0005_1429 132 1e-29 Ahg322696 jgi|Araly1|322696|fgenesh1_pm.C_scaffold_5000240 111 1e-23 > Ahg478478 jgi|Araly1|478478|fgenesh2_kg.3__1179__AT3G11410.1 Length=1539 Score = 1940 bits (1050), Expect = 0.0 Identities = 1382/1531 (90%), Gaps = 67/1531 (4%) Strand=Plus/Plus Query 1 ATTGCATTTCCTAACGCTCAACAAAAtctctctctactaatatct-ct-ctctctctctc 58 ||||||||||||||||||| | ||||||||| ||| || | ||| || | |||||||| Sbjct 1 ATTGCATTTCCTAACGCTC-A-AAAATCTCTTTCT-CT-CTCTCTACTAATATCTCTCTC 56 Query 59 tctATTGTTG-A-A-GAAGACTCATAATCGGAGATTGTTTGTTTTTGGTTTGCTCTGTAA 115 | | ||| | | | ||||||||| |||||||||||||||| |||| |||||||||| | Sbjct 57 T-TGTTGAAGAAGACGAAGACTCA-AATCGGAGATTGTTTG--TTTGCTTTGCTCTGT-A 111 Query 116 ATTGGAG-AA-GTTTTGTTAGAGATCAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 173 |||| || || ||| |||| | | | |||||||||||||||||||||||||||||||||| Sbjct 112 ATTGAAGAAAGGTTCTGTT-GTGGTTAAATGGCTGGGATTTGTTGCGGTGTTGTTGGAGA 170 Query 174 GACTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 233 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 GTCTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGA 230 Query 234 TCTACTTCCGTCGATCAAAATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAAAACTG 293 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || Sbjct 231 TCTACTTCCGTCGATCAAGATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAGAGTTG 290 Query 294 CCGTAAACGGCAGAAGCGTGAGACAGTAGTGCTCTCGACGTTACCGGGAAATCTAGATCT 353 |||||| ||||||||| ||||||||||||| | || | ||||||||||||| Sbjct 291 TCGTAAAAGGCAGAAGCTTGAGACAGTAGTG---T---CG--A----GAAATCTAGATCT 338 Query 354 GGATTCGAATGTGAGGAGTGAGA-ATAAGAAGGCTAGATCAGCGGTTACGAATTCAAATT 412 ||| ||||||||||||||||| | ||||||||| || ||||||||||||||||||||||| Sbjct 339 GGAATCGAATGTGAGGAGTGA-ACATAAGAAGGTTAAATCAGCGGTTACGAATTCAAATT 397 Query 413 CTGTTACGGAAGCAGAGA---GTTTCTTTTCCGATGTACCTAAGATCGGTACGACGTCGG 469 | |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| Sbjct 398 CCGTTACGGAAGCAGAGAGCTGTTTCTTTTCCGATGTGCCTAGGATCGGTACGACGTCGG 457 Query 470 TTTGTGGTAGAAGACGAGACATGGAAGACGCTGTCTCGATTCATCCTTCGTTTCTTCAAC 529 |||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| Sbjct 458 TTTGTGGTAGAAGAAGAGACATGGAAGACGCTGTATCAATTCATCCTTCGTTTCTTCAAC 517 Query 530 GGAACTCTGAGAATCATCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 589 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 518 GAAACTCTGAGAATCTTCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTG 577 Query 590 CGGAGAAGTGCAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 649 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 578 CGGAGAAGTGTAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTT 637 Query 650 CCGACGAGTGGACAGAGACGATGGTTAAGAGTTTTCAAAAAATGGATAAAGAAGTTAGCC 709 |||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 638 CCGACGAGTGGAAAGAGACGATGGTGAAGAGTTTTCAAAAAATGGACAGAGAAGTTAGCC 697 Query 710 AACGAGAGTGTAACTTAGTTGTTAATGGTGCTACTCGGAGTATGAAAAATTCTTGTAGAT 769 | ||||||||||||||||||||||||||||| | |||||||||||| || |||||||||| Sbjct 698 AGCGAGAGTGTAACTTAGTTGTTAATGGTGCAAATCGGAGTATGAAGAACTCTTGTAGAT 757 Query 770 GTGAATTGCAGTCTCCTCAGTGTGACGCCGTCGGATCCACCGCTGTTGTATCGGTTGTCA 829 |||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||| Sbjct 758 GTGAATTGCAGTCTCCTCAGTGCGATGCCGTCGGATCCACCGCTGTTGTCTCTGTTGTCA 817 Query 830 CGCCGGAGAAGATCATTGTTTCTAATTGCGGTGATTCACGGGCTGTGCTTTGTCGTAACG 889 |||||||||||||||||||||| || ||||| ||||| || || |||||||| ||||||| Sbjct 818 CGCCGGAGAAGATCATTGTTTCCAACTGCGGCGATTCTCGCGCCGTGCTTTGCCGTAACG 877 Query 890 GTGTAGCCATTCCTCTCTCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 949 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 GTGTAGCCATTCCTCTATCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGA 937 Query 950 TCCAACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 1009 |||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 938 TCCAGCAAGCGGGTGGGCGGGTTATTTATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTG 997 Query 1010 CCATGTCTAGAGCAATTGGTGATAATTACTTGAAACCGTATGTGATTCCGGATCCGGAGG 1069 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 998 CCATGTCTAGAGCAATTGGCGATAATTACTTGAAACCATATGTGATTCCGGATCCGGAGG 1057 Query 1070 TAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1129 | |||||||||||||| || || || || ||||||||||||||||||||||||||||||| Sbjct 1058 TTACAGTGACGGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGACTAT 1117 Query 1130 GGGATGTTGTACCAAACGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1189 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 GGGACGTTGTACCAAATGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTG 1177 Query 1190 GTGCGGGTG-ACGACT-CAG-ATGCGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCT 1246 || || || | || | ||| | |||||||||||||||||||| |||||||||||||| | Sbjct 1178 GTCCGA-TGGATGA-TGCAGCA-GCGGCGCACAATGCGTGCTCTGATGCGGCGTTGCTAT 1234 Query 1247 TAACAAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTTGTGGTTGACT 1306 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1235 TAACGAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTGGTGGTTGACC 1294 Query 1307 TGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAATAAT-TAGT--GT-TAT-AATTAGT 1361 ||||||||||||||||||||||| ||||||||||||||| |||| || | | ||||||| Sbjct 1295 TGAGGAAGAGGAGGAATAATCAATCGTCGTCTTAATAATATAGTTAGTGTTTTAATTAGT 1354 Query 1362 AGTAGTATTAGA-ATAATTGTTACATA-GCCTAATTGTAATTGTATTCtttttatttttc 1419 | |||||||||| | |||||||||||| |||||||||||||| | || | | Sbjct 1355 AATAGTATTAGAGA-AATTGTTACATAAGCCTAATTGTAATT-T-TT-T----------C 1400 Query 1420 tattttagtttttctcattttaaggtgttttttcttttctattttAGTTAGCTCTTAATT 1479 |||||||||||| |||||| |||||||| |||||||| | || ||||||||||||||| Sbjct 1401 TATTTTAGTTTT-CTCATTG-AAGGTGTTCTTTCTTTT-T-TT--AGTTAGCTCTTAATT 1454 Query 1480 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1510 ||||||||||||||||||||||||||||||| Sbjct 1455 CAGGCTGGGGAAGAAAAAGAGCTGATTAAAT 1485 > Ahg907619 jgi|Araly1|907619|Al_scaffold_0002_700 Length=312 Score = 207 bits (112), Expect = 2e-52 Identities = 246/306 (80%), Gaps = 28/306 (9%) Strand=Plus/Plus Query 1067 AGGTAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGAC 1126 ||||||||||||| ||||| || || || || |||||||||||||||||||||||||||| Sbjct 11 AGGTAACAGTGACAGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGAC 70 Query 1127 TATGGGATGTTGTACCAAACGAGACGGCGTG-TGG--C---GTGGCTCGCATGTGCCTTC 1180 ||||| | ||||||||||| |||||||||| ||| | || | | || |||||| || Sbjct 71 TATGGAACGTTGTACCAAATGAGACGGCGTTATGGTACAACGTTG-T-GC-TGTGCCCTC 127 Query 1181 GAGGTGCTGGT-G--CGG---GTGACGACTCAGATGCGGC-GC---A--CAATGCGTGCT 1228 ||||||||||| | ||| |||| || || | ||| || || | |||||| |||| Sbjct 128 GAGGTGCTGGTAGAGCGGATTGTGATGATTCTGTTGCAGCAGCCGTAGACAATGCTTGCT 187 Query 1229 CCGATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGAC-AGAGCTCCGATAACGTG 1287 | ||||| | ||||| ||||| ||||| ||||||||||||| | |||| ||||||||| Sbjct 188 CTGATGCTTCTTTGCTATTAACGAAGTTTGCTCTAGCAAGACCA-AGCTTTGATAACGTG 246 Query 1288 AGCGTCGT--TG---TGGTTGACTTGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAAT 1342 ||||| || || |||||||| |||||||||||||||||||||| | |||||||||| Sbjct 247 AGCGTTGTGGTGCAGTGGTTGACAGGAGGAAGAGGAGGAATAATCAATCATCGTCTTAAT 306 Query 1343 AATTAG 1348 |||||| Sbjct 307 AATTAG 312 > Ahg894853 jgi|Araly1|894853|Al_scaffold_0006_2849 Length=465 Score = 189 bits (102), Expect = 6e-47 Identities = 138/156 (88%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 804 ATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGA 863 ||||||||| || || || ||||||||||||||||||| |||| |||| || ||||| || Sbjct 15 ATCCACCGCCGTCGTCTCTGTTGTCACGCCGGAGAAGACCATTATTTCCAAATGCGGCGA 74 Query 864 TTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAGCC 923 |||||| | | ||||||| ||| |||| ||||||| |||||||||||| ||||||||||| Sbjct 75 TTCACGTGATATGCTTTGCCGTGACGGCGTAGCCAGTCCTCTCTCCGTGGATCACAAGCC 134 Query 924 GGATCGACCCGATGAATTGATTCGGATCCAACAAGC 959 |||||||||||||||||||||||||||||| ||||| Sbjct 135 GGATCGACCCGATGAATTGATTCGGATCCAGCAAGC 170 > Ahg925214 jgi|Araly1|925214|scaffold_200775.1 Length=235 Score = 152 bits (82), Expect = 7e-36 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 804 ATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGA 863 |||||||||||| || || ||||||||||||||||||||||||||||| || ||||| || Sbjct 41 ATCCACCGCTGTCGTCTCTGTTGTCACGCCGGAGAAGATCATTGTTTCCAAATGCGGCGA 100 Query 864 TTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAG 921 |||||| || |||||||| | |||||| |||||||||||||||||||| ||||||||| Sbjct 101 TTCACGTGCCGTGCTTTGCCATAACGGCGTAGCCATTCCTCTCTCCGTGGATCACAAG 158 Score = 89.8 bits (48), Expect = 6e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 981 GGATGGAGCTAGGGTTCTTGGAGTTCTTGCCATGTCTAGAGCAATTGGTGA 1031 |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 158 GGATGGAGCTAGGGTTCTTGGAGTTCTTGCTATGTCTAGAGCAATTGGTGA 208 > Ahg897463 jgi|Araly1|897463|Al_scaffold_0005_1429 Length=234 Score = 132 bits (71), Expect = 1e-29 Identities = 104/119 (87%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 1211 CGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGAC 1270 |||| |||||||| ||||| ||||| | ||||| ||||||||||||||||||||||||| Sbjct 133 CGGCACACAATGCTTGCTCTGATGCTTCATTGCTATTAACAAAGTTGGCTCTAGCAAGAC 74 Query 1271 AGAGCTCCGATAACGTGAGCGTCGT--T---GTGGTTGACTTGAGGAAGAGGAGGAATA 1324 |||||||||||||||||||||| || | ||||||||| ||||||||||||||||| Sbjct 73 AGAGCTCCGATAACGTGAGCGTTGTGGTACAGTGGTTGACAGGAGGAAGAGGAGGAATA 15 > Ahg322696 jgi|Araly1|322696|fgenesh1_pm.C_scaffold_5000240 Length=429 Score = 111 bits (60), Expect = 1e-23 Identities = 73/79 (92%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 954 ACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTGCCAT 1013 |||||| |||||||| ||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 109 ACAAGCAGGTGGGCGGGTTAT-TATTGGGATGTAGCTAAGGTTCTTGGAGTTCTTGCCAT 167 Query 1014 GTCTAGAGCAATTGGTGAT 1032 |||||||||||||| |||| Sbjct 168 GTCTAGAGCAATTG-TGAT 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61439565185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5