BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11420.1 Length=2124 Score E Sequences producing significant alignments: (Bits) Value Ahg478479 jgi|Araly1|478479|fgenesh2_kg.3__1180__AT3G11420.1 3035 0.0 > Ahg478479 jgi|Araly1|478479|fgenesh2_kg.3__1180__AT3G11420.1 Length=2049 Score = 3035 bits (1643), Expect = 0.0 Identities = 1921/2054 (94%), Gaps = 23/2054 (1%) Strand=Plus/Plus Query 27 TATTCGAAAGTCGTCACATCGTTGACTAAAGCTGAGGACAACTCTGTCA-TT-T-T-TAT 82 ||||||||||||||||||||||||||| ||| |||||||| || |||| || | | | | Sbjct 1 TATTCGAAAGTCGTCACATCGTTGACTGAAGATGAGGACATGTCCGTCATTTGTGTGTTT 60 Query 83 CT-TATTCACGTGGCTACCTCTTCTTCTTCGTCTCTCATTTTATGTGTAATCCCACAGAG 141 | |||||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||| Sbjct 61 TTCTATTCACGTGGCTACCTCTTCTTCTTCGTCTCCCA-TTTATCTGTTATCCCACCGAG 119 Query 142 CTTGTCACTCCaaaaaagg-caaaacaaaaaaaaaacagcttctaaaaataaaaaacaaa 200 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 120 CTTGTCACTCCAAAAAAGGTAAAAACAAAAAAAAAACAGCTTCTAAAAATAAAAAATAAA 179 Query 201 aCAATAA-TCCAGCCACCGTAG-GGGTAATTCCGTAAATTTGTAACAGAAACTCCATTCC 258 | ||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||| Sbjct 180 AAAATAACCCCAGCCACCGT-GAGGGTAATTCCGTAAATTT-TAACAGAAACTCCATTCC 237 Query 259 CGCGGCGTATGCAGAGGGCAATCCCGTAAACTTAACCCATCTCCGGTGATGAATAATATC 318 |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||| Sbjct 238 CGCGGCGTATGCAGAGGGTAATTCCGTAAACTTAAGCCATCTCCGGTGATGAATAAGATC 297 Query 319 AATTCCTTCACGCCGGAGTGATTTTCCACA-AAAAATAAGATATGAAAGCAAATCGCGGC 377 | |||||||||||||||||||||| |||| |||||||| | ||||||||||| |||||| Sbjct 298 CACTCCTTCACGCCGGAGTGATTTTTCACATAAAAATAA-ACATGAAAGCAAACCGCGGC 356 Query 378 GGCGGAGAGCACGGCCAACACGAGGCTCTAAAGCTTTCCAGTTTCTTCTTCATGCCGGAG 437 ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| Sbjct 357 GGCGGAGAGCACGGCCACCACGAGGCTCTCAAGTTTTCCAGTTTCTTCTTCATGCCGGAA 416 Query 438 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CGGCCACGTGATTACCTCGTGCTTTTCACACGTTTCTCCGTCCTCACGTGCCTCATCGTC 476 Query 498 TCCGTATCTCTTGTTCTCCGCGCCACTTTTTTATCCCCTTCCGCTCGAGACTATTCCACC 557 ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 477 TCCGTCTCTCTGGTTCTCCGTGCCACTTTTTTATCCCCCTCCGCTCGTGACTATTCCACC 536 Query 558 ACCTACGGTCTCAAATTAACCGCCGTACCTCAAAAAGCCATAGCTCTCCCTCCGTCCGCA 617 |||||||||||| | | |||||||||||||| |||||||||||| |||||||| ||| | Sbjct 537 ACCTACGGTCTCCGACTCACCGCCGTACCTCAGAAAGCCATAGCTTTCCCTCCGACCGGA 596 Query 618 TCCGTCGGACCAACCAATATCTCCCATATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 677 ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 597 TCCGTCGGACCGATCAATATCTCCCACATCTTCTTCTCTATCGCCGGAGCAGCTGAGACA 656 Query 678 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACACGACACGTGGCTTCGTC 737 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 657 TGGATCGATCGGAGCCAGTACATCTCCTTATGGTGGCGAAACTCGACACGTGGCTTCGTC 716 Query 738 TGGCTCGATGAACCGGTGAAAATCCCTGAAAATCACTCCGATGTCAGATTCTCGATCCCG 797 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 717 TGGCTCGATGAACCGGTGAAAATCCCCCAAAATCACTCCGATGTCAGATTCTCGATCCCG 776 Query 798 ACTCGAGTTTCTGATCCAGGCTGGACTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 857 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 777 ACTCGAGTTTCCGATCCAGGCTGGAGTCGATTCAAATTCTCCAGCTCAAGAGCCGCGGTT 836 Query 858 CGAATCGCTCGTATAATCTGGGATAGTTATCGGTTAAATCTACCAAATGTCCGGTGGTTC 917 ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 837 CGAATCGCTCGGATAATCTGGGATAGTTATCGGCTAAATCTACCAAATGTGCGGTGGTTC 896 Query 918 GTCATGGGAGATGACGATACCGTCTTCTTCACCGAGAATCTCGTCAAGGTTCTCTCAAAG 977 || ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 897 GTGATGGGAGATGACGATACCGTCTTCTTCACGGATAATCTCGTCAAGGTTCTCTCGAAG 956 Query 978 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCAGAGAGCGTCGAGCAAGACGTG 1037 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 957 TACGACCACGAGCAGATGTGGTACATCGGAGGAAACTCGGAGAGCGTCGAGCAAGATGTG 1016 Query 1038 ATGCACGCGTACGATATGGCGTTTGGCGGCGGTGGTTTCGCTCTGAGCCGTCCATTAGCG 1097 |||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||| Sbjct 1017 ATGCACGCGTACGACATGGCGTTTGGCGGCGGCGGTTTCGCTATTAGCCGTCCATTAGCG 1076 Query 1098 GCGCGTTTGGCCGCCGCGATGGATGATTGTCTCCAACGTTATTTCTATTTTTACGGTTCT 1157 ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1077 GCGCGTTTGGCTGGCGCGATGGATGATTGTCTCCAACGGTATTTCTATTTTTACGGTTCT 1136 Query 1158 GATCAGAGAATCGCGTCTTGCATCAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1217 ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1137 GATCAGAGAATCGCGGCTTGCGTTAGCGAGATCGGCGTTCCGTTCACCGAAGAACGCGGT 1196 Query 1218 TTTCATCAGCTTGACATAAGAGGAGATCCATACGGGTTTCTAGCGGCGCATCCATTGGCA 1277 ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct 1197 TTTCACCAGCTTGACATAAGAGGAGATCCATACGGATTTCTAGCAGCGCATCCGTTGGCA 1256 Query 1278 CCGCTTGTATCGTTGCATCACCTTGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1337 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1257 CCACTTGTATCGTTGCATCACCTCGTTTACTTAGACCCAATGTTCCCTAACAAAAACCCG 1316 Query 1338 ATCGAGTCGTTACAGACCCTAATGAAACCTTATACCTTAGACCCGAATCGAATACTCCAA 1397 |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| Sbjct 1317 ATCGAGTCGTTACAGACCCTTATGAAACCTTATAACTTAGACCCAAATCGAATACTCCAA 1376 Query 1398 CAGATTAATTGTCATGATCGCAAACGTCAATGGTCTATATCCATCTCTTGGGGATACACC 1457 ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1377 CAGGTTAATTGCCATGATCGCAAGCGTCAATGGTCTATATCCATCTCTTGGGGATACTCC 1436 Query 1458 ATTCAGATATACACTTACTTCTTGACTGCTACGGAGCTGACTACGCCGTTGCAGACCTTC 1517 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1437 ATTCAGATCTACACTTACTTCTTGACTGCTACGGAGCTGAATACGCCGTTGCAGACCTTC 1496 Query 1518 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTTAACACTCGGCCCTTGAAACCT 1577 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1497 AAAACTTGGCGGTCTTCCAGCGATGGACCTTTCGTGTTCAACACTCGGCCCTTGAAACCT 1556 Query 1578 GACCCCTGTGAGCGTCCGGTCACTTATTTCATGGATGGTGCCGAGGATGTACGGGATAGT 1637 ||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||| |||| Sbjct 1557 GACCCGTGTGAGCGTCCCGTCATTTATTTCATGGATGGTGCAGAGGATGTGCGGGGTAGT 1616 Query 1638 GGGACGAAAACTTGGTATAGCATAGGGGATAAGAACTATGGTCATTGCGGAAAGATTGAG 1697 ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||| Sbjct 1617 GGGACGAAAACTTGGTATAGCATAGCGGATAAGAATTATGGTCATTGCGAAAAGAGTGAG 1676 Query 1698 CATACTCGATTAACTAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1757 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 CATACTCGGTTAACCAAAGTGAAGAGGATATTGGTGACTTCAATGAAGACGGATCCTGAG 1736 Query 1758 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGgaaggaaaagtaggaaaa 1817 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1737 TATTGGAACAAGGCACCGAGGAGACAGTGTTGTGAGGTGATGGAAGGTGGGGGAGGAAAA 1796 Query 1818 agaaaagagaaagaaaTGTTGTTAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATaa 1877 |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1797 AGAATGGAAAAAGAAATGTTGATAAGGATTAGAAAATGCAGATCTTTGGAGAAGATATAA 1856 Query 1878 aaaaaGCGTTTTAATTAGAGAGAT-T-TTT--GCACATACAGATTTAGATTCGATCATTA 1933 |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| | Sbjct 1857 AAAAAGCGTTTTAATTAGAGAGATATATTTTTGCACATACAGATTTAGATTCGATCAT-A 1915 Query 1934 GTTATTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATG----ACGATTTTCTCT 1989 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1916 GTTGTTTGTTTCTAAATTCCTCAATTCCTAGTACCAAGAGAATGGCGTACGATTTTCTCT 1975 Query 1990 AGTAATACTGGCACTCTT-CGTTTTTCAACATGTAAACATTACTTTGTATAATTAGTCTA 2048 | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 1976 ATTAATACTGGCACTCTTGCGTTTTTCATCATGTAAACATTACTTTGTATAATTAGTCGA 2035 Query 2049 TATCAAATAAATAG 2062 ||| |||||||||| Sbjct 2036 TATAAAATAAATAG 2049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79913334010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5