BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11450.1 Length=2432 Score E Sequences producing significant alignments: (Bits) Value Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 2013 0.0 Ahg940041 jgi|Araly1|940041|scaffold_600585.1 542 6e-153 > Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 Length=2072 Score = 2013 bits (1090), Expect = 0.0 Identities = 1179/1223 (96%), Gaps = 2/1223 (0%) Strand=Plus/Plus Query 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAGGAG 300 |||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||||||| Sbjct 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTATTACATACTCTGAGGAG 60 Query 301 CTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAAC 120 Query 361 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGAA 420 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 121 CGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAGAA 180 Query 421 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAACCCACAGACGATGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAGGAATAT 240 Query 481 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCAGCAACAA 540 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 GTTCCTTCATTCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTACCCAGCAACAA 300 Query 541 GACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGATCAGATT 600 ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 301 GACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAGAAGATCAGATT 360 Query 601 AGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAGTCTCCTT 660 |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 361 AGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCGCTACTCTCCTT 420 Query 661 CT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATTGAATCTCGCTT 719 || | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 CTCGC-AGAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATAGAATCTCGCTT 479 Query 720 CAAAGCGATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGAATTTTTGA 779 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 480 CAAAGCGATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAGAAGAATTTTTGA 539 Query 780 CTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGCCGCAAGACTTTTTCAA 839 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 540 CTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGCCGCAAGACTTTTTCAA 599 Query 840 GGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 899 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 GGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAATCAGCGTATTCCAGA 659 Query 900 TTTGGGAGATGAAAACACACCACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 959 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCTACAACTTTTGGTACGC 719 Query 960 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGATCTTGAACAAGCAGATTC 779 Query 1020 CCGTGAAGAACGTAGGTGGATGGAAAAGGAGAATGCaaaaaaaaCTGTGAAGGCTAGAAA 1079 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 780 CCGTGAAGAACGGAGGTGGATGGAGAAGGAGAATGCAAAAAAAACTGTGAAGGCTAGAAA 839 Query 1080 GGAGGAGCATGCTCGAATCAGGACTCTTGTTGACAATGCGTATagaaaagacccgagaat 1139 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 840 GGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGTATAGAAAAGACCCGAGGAT 899 Query 1140 tgtgaaaagaaaagaggaagaaaaggctgagaagcaacagaaaaaagatgcaaaaattca 1199 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 900 TGTGAAAAGAAAAGAGGAAGAAAAGGCTGAGAAGCAACAGAAAAAAGAAGCAAAGCTTCT 959 Query 1200 ggccaagaagaagcaggaagaggacgctgctattgctgctgaagaagagaaaaggcgaaa 1259 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GGCCAAGAAGAAGCAGGCAGAGGACGCTGCTATTGCTGCTGAAGAAGAGAAAAGGCGAAA 1019 Query 1260 agaagaagaagaaaagcgagcagcagaatctgcacaacaacaaaagaaaactaaggaaag 1319 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AGAAGAAGAAGAAAAGCGAGCAGCAGAATCTGCACAACAACAAAAGAAAACTAAGGAAAA 1079 Query 1320 AGAGAAGAAGCTCTTACGCAAAGAACGAAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1379 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1080 AGAGAAGAAGCTCTTACGCAAAGAACGGAATCGTCTTAGAACTCTCTCAGCTCCTCTCGT 1139 Query 1380 GGCTCAGCGTCTGCTTGACATCTCTGAGGAAGATATAGAGAATCTATGCATGTCACTTAA 1439 ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || Sbjct 1140 GGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATATAGAGAATCTATGCATGTCACTAAA 1199 Query 1440 CACCGAGCAGTTGCAGAATCTAT 1462 |||||||||||| |||| ||||| Sbjct 1200 CACCGAGCAGTTACAGACTCTAT 1222 Score = 1373 bits (743), Expect = 0.0 Identities = 817/853 (96%), Gaps = 4/853 (0%) Strand=Plus/Plus Query 1514 ATGGATGCAACAGTAGTAGAAATGATGAAGCCGAATCTAAAGAAAAAGTAAGTAAGAAGA 1573 |||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 1223 ATGGATGCGACAGTAGTAGAAACGACGAAGCCGAATCTAAAGAAAAAGAAAGTAAGAAGA 1282 Query 1574 CCAACGGTGGCACAGAGCCTACAACCCGAGTTTCACAGTTAGATAGTAGCACTCAGAAGA 1633 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1283 CCAACGGTGGCACAGAGCCTACACCCCGAGTTTCTCAGTTAGATAGTAGCACTCAGAAGA 1342 Query 1634 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1343 AACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGATAAAATATCCAA 1402 Query 1694 AGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGATCTGTAG 1753 |||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1403 AGGGGACATCTCGAAGATGGGAAGTTGTTTCAGAGTACATTGGTACAGGAAGATCGGTAG 1462 Query 1754 AGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTAAAGCAT 1813 |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1463 AGGAGATTCTGAAAGCAACTAAAACAGTTCTTCTCCAAAAACCAGATTCAGCTAAAGCAT 1522 Query 1814 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCACATCCCCTCTCTCCACAA 1873 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1523 TCGATTCTTTCCTCGAGAAGAGGAAACCCTCTGCTTCAATCTCATCCCCTCTCTCCACAA 1582 Query 1874 GAGAGGAGCTCGGAGAATCTCTACCCACAATGACGACCACAACAAATGCAAAGCCCTCTA 1933 ||||||||||||||||||||||||| || |||| ||||| |||||||||| ||||||| Sbjct 1583 GAGAGGAGCTCGGAGAATCTCTACCTACGGTGACTACCACGGCAAATGCAAAACCCTCTA 1642 Query 1934 AAGAGACTGTTGTGGGGAAAAGCTCGAGCAGTCAAAGCTCAGACAACAATGGTGAAGTAG 1993 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1643 GAGAGACTGTTGTGGGGAAGAGCTCGAGCAGTCAAAGCTCCGACAACAATGGTGAAGTAA 1702 Query 1994 GTGGAAGTTCAGACGCAGATAGTTGGTCGACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 2053 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1703 GTGGAAGTTCAGACGCAGATAGTTGGTCAACTGTGCAAGAAAGAGCTTTGGTTCAAGCTT 1762 Query 2054 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTCCCTG 2113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1763 TAAAGACATTCCCGAAAGAGACAAGCCAAAGATGGGAGAGAGTAGCTGCAGCTGTTCCTG 1822 Query 2114 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 2173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1823 GTAAAACGATGAACCAATGCAAGAAGAAGTTTGCAGAGCTTAAGGAAATCATTAGAAACA 1882 Query 2174 AGAAAACCGGAGTATGAGGTAAAATCATTTCGGAGTCCCATGAGAATTTTGGGTTTTAAT 2233 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1883 AGAAAACCGGAGTGTGAGGTAAAATCAATTCGGAGTCCCATGAGAATTTTGGGTTTGAAT 1942 Query 2234 CCTCTTGGGGCACCGTTACTTTGCGAGAAGCA-AGACCTAAAACTTTTTTATTATTTGTA 2292 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1943 CCTCTTGGGGCACCGTTACTTTGCGAGAAG-ATAGACCTAAAACTTTTTTATTATTTGTA 2001 Query 2293 ATGATTCATTTCCCTTTGATGTCTCTATATATTGAGAGTGCTGGAGCCACTATTATGGAG 2352 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 2002 ATGATTCATTTCCCTTTGTTGTCTCTATATATTGAGAGTGCTGGAGCCACTGTTATGGAG 2061 Query 2353 TATGTTGTTTTTT 2365 ||| || |||||| Sbjct 2062 TAT-TT-TTTTTT 2072 > Ahg940041 jgi|Araly1|940041|scaffold_600585.1 Length=1746 Score = 542 bits (293), Expect = 6e-153 Identities = 560/687 (82%), Gaps = 26/687 (4%) Strand=Plus/Plus Query 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAG-GA 299 |||||||||| ||| || ||| | | |||||||||| |||| |||||||||| || || Sbjct 15 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTACGTACTC-CAGTGA 73 Query 300 GCTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAA 359 ||| ||||||| || || ||| ||||| ||||||||||| |||||| ||||| |||| Sbjct 74 GCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTTAAGGCCGTAAA 133 Query 360 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGA 419 |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||| || | Sbjct 134 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGGTGTACA-A 192 Query 420 AG-AACCCACA-G-ACGA-TGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAG- 474 || || ||||| | | || ||||| | ||||||||||| | | || || || | | Sbjct 193 AGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGGAGAAGGATA-GT 251 Query 475 GAATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCA 533 |||||| ||||||| | | | |||| || || |||||||||||||||||| || | || Sbjct 252 GAATATATTCCTTCCTATGA-CTCGCATAACATCAAAGGAAAGAAGAAGTCGGGGAAGCA 310 Query 534 GCAACAAGACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGA 593 ||||| || ||||||||||||||||||||| ||||| ||||||||||||| || || || Sbjct 311 ACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAGAGGA 370 Query 594 TCAGATTAGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAG 653 |||||| || ||||| ||||| ||||||||| |||| ||||| ||||||||||| |||| Sbjct 371 TCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATAAACTTGCTAC 430 Query 654 TCTCCTTCT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCaaaaaaaGATGAGATTGAAT 712 ||| ||||| | | || || ||||||||||| || | || || || |||||||| |||| Sbjct 431 TCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGATGAGATAGAAT 489 Query 713 CTCGCTTCAAAGC-GATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGA 771 ||| |||||| | ||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 490 CTCACTTCAA-GTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACAAAAAGAAGA 548 Query 772 ATTTTTGACTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGC-C-GCAAG 829 || |||||||| || ||||||||||||||| | |||||| | ||||| | || | ||||| Sbjct 549 ATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCGCAAG 606 Query 830 ACTTTTTCAAGGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAAT-CAG 888 |||| |||||||| ||||||||||| ||||||||||| || |||||||| | ||| | | Sbjct 607 ACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTC-G--AATTC-G 662 Query 889 CGTATT-CCAGATTTGGGAGATGAAAA 914 | | || |||||||||||||||||||| Sbjct 663 CCT-TTACCAGATTTGGGAGATGAAAA 688 Score = 259 bits (140), Expect = 6e-68 Identities = 224/264 (85%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 1630 AAGAAACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGA-TAAAATA 1688 |||| | |||| |||||||||||||||||||| |||||||||||||||| | | || | Sbjct 1120 AAGAGA-AACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAAAAGGAACAACT-AAGT- 1176 Query 1689 T-CCAAAGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGAT 1747 | ||||| || ||||| | ||||||||||| || ||||||||||||||||||||||||| Sbjct 1177 TCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACATTGGTACAGGAAGAT 1236 Query 1748 CTGTAGAGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTA 1807 |||| ||||||||||| || || || |||||||| || || || ||||| || ||||||| Sbjct 1237 CTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGAAACCTGACTCAGCTA 1296 Query 1808 AAGCATTCGATTCTTTCCTCGAGAAGAGGAAACCCT-CTGCTTCAATCACATCCCCTCTC 1866 ||||||| |||||||| || |||||||||||||| | ||||||||||| | || |||||| Sbjct 1297 AAGCATTTGATTCTTTTCTGGAGAAGAGGAAACC-TGCTGCTTCAATCGCCTCTCCTCTC 1355 Query 1867 TCCACAAGAGAGGAGCTCGGAGAA 1890 || ||| ||||||| ||||||||| Sbjct 1356 TCTACACGAGAGGAACTCGGAGAA 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91645129470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5