BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11630.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928878 jgi|Araly1|928878|scaffold_301335.1 1550 0.0
Ahg940065 jgi|Araly1|940065|scaffold_600609.1 713 0.0
> Ahg928878 jgi|Araly1|928878|scaffold_301335.1
Length=934
Score = 1550 bits (839), Expect = 0.0
Identities = 905/937 (97%), Gaps = 3/937 (0%)
Strand=Plus/Plus
Query 48 TCACAAAGTGTGTGTAGCAGCAATGGCGTCTGTTGCTTCTTCAACTACTCTCATCTCTTC 107
||||||| ||||||| || ||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 TCACAAA--GTGTGTATCATCAATGGCGTCTCTAGCTTCTTCAACTACTCTCATCTCTTC 58
Query 108 TCCCTCTTCTAGGGTTTTTCCAGCAAAGTCTTCACTTTCCTCTCCATCTGTTTCTTTCCT 167
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCCATCTTCTAGGGTTTTTCCAGCAAAGTCTTCACTTTCCTCTCCATCTGTTTCTTTCCT 118
Query 168 TCGAACCCTTTCTTCTCCTTCCGCATCTGCTTCTCTCCGCTCCGGATTTGCTCGACGCTC 227
|||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 119 TCGAACCCTTTCCTCTCCTTCCGCATCTGCTTCTCTCCGCTCCGGCTTCGCTCAACGCTC 178
Query 228 TTCCCTCAGCTCCACTTCTCGTCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTTCC 287
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCCTCAGCTCCACTTCTCGCCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTTCC 238
Query 288 ACTGGTTGGAAACAAGGCGCCTGATTTTGAGGCAGAGGCTGTGTTTGATCAAGAGTTCAT 347
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 239 ACTGGTTGGAAACAAGGCGCCTGATTTCGAGGCAGAGGCTGTGTTTGATCAGGAGTTCAT 298
Query 348 CAAGGTTAAGCTCTCTGATTACATTGGAAAGAAGTATGTGATTCTCTTTTTCTACCCATT 407
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 CAAGGTTAAGCTCTCTGAGTACATTGGAAAGAAGTATGTGATTCTCTTCTTCTACCCATT 358
Query 408 GGACTTTACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATT 467
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGACTTCACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATT 418
Query 468 TGAGAAGTTGAACACCGAAGTATTAGGTGTTTCTGTCGATAGTGTGTTCTCTCACCTTGC 527
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 419 TGAGAAGTTGAACACCGAAATATTAGGTATTTCTGTCGATAGTGTGTTCTCTCACCTTGC 478
Query 528 ATGGGTCCAAACAGACAGGAAATCTGGAGGGCTTGGTGATCTGAACTATCCCCTTATTTC 587
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ATGGGTCCAAACAGACAGGAAATCTGGAGGGCTTGGTGATTTGAACTATCCCCTTATTTC 538
Query 588 AGATGTCACTAAATCAATCTCAAAGTCGTTCGGAGTGCTCATCCATGATCAGGGAATAGC 647
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 539 AGATGTCACTAAATCAATCTCAAAGTCTTTTGGAGTGCTCATCCATGATCAGGGAATAGC 598
Query 648 ACTGAGAGGACTTTTCATAATCGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAA 707
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACTGAGAGGGCTCTTCATAATTGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAA 658
Query 708 TCTTGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACAT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTTGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACAT 718
Query 768 CCAGGAAAACCCGGATGAAGTCTGCCCAGCAGGATGGAAGCCGGGTGAGAAGTCAATGAA 827
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 CCAGGAAAACCCGGATGAGGTCTGCCCAGCGGGATGGAAGCCGGGTGAGAAGTCAATGAA 778
Query 828 ACCCGACCCAAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGAAACTCTACTATGATAG 887
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCTGACCCGAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGAAACTCTACTATGATAG 838
Query 888 CAAAAAGGTACAATCTTTGTTATATGTGAGCAGAGttttttttCTTGTACGCTAAAACAA 947
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 CAAGAAGGTACAATCTTTGTTATATCTGAGCAGAGTTTTTTTTCTTGTACGCTAAAACAA 898
Query 948 TCCTTTGTTTGATTCTCACTTTGTCCCCAAAATTATA 984
||||||||||||||||||||||||||||||| |||||
Sbjct 899 TCCTTTGTTTGATTCTCACTTTGTCCCCAAA-TTATA 934
> Ahg940065 jgi|Araly1|940065|scaffold_600609.1
Length=840
Score = 713 bits (386), Expect = 0.0
Identities = 559/642 (87%), Gaps = 14/642 (2%)
Strand=Plus/Plus
Query 237 CTCCACTTCTCGTCGGAGCTTTGCT-GTCAAAGCCCAGGCCGATGATCTT-CCACTGGTT 294
|||| | || || |||||||| | | ||||| || |||||||||||| || ||||||||
Sbjct 184 CTCCGCCTCACGCCGGAGCTTCG-TCGTCAAGGCACAGGCCGATGAT-TTACCACTGGTC 241
Query 295 GGAAACAAGGCGCCTGATTTTGAGGCAGAGGCTGTGTTTGATCAAGAGTTCATCAAGGTT 354
|| || |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 242 GGTAATAAGGCGCCTGATTTTGAGGCAGAGGCAGTTTTTGATCAAGAGTTCATCAAGGTG 301
Query 355 AAGCTCTCTGATTACATT-GGAAAGAAGTATGTGATTCTCTTTTTCTACCCATTGGACTT 413
||||||||||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 302 AAGCTCTCTGAGTACATTGGGAAA-AAGTATGTCATTCTATTTTTCTACCCTTTGGACTT 360
Query 414 TACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGC-ATTCAGAATTTGAGA 472
||||| || ||||| ||||||||||||||||||||||||| || || ||| |||||||
Sbjct 361 CACTTTTGTTTGCCCCACAGAGATTACTGCCTTCAGTGACC-GCTATGAAGATTTTGAGA 419
Query 473 AGTTGAACACCGAAGTATTAGGTGTTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGG 532
|| | ||||||||||||||||| || || ||||| ||||||||||| || || || ||||
Sbjct 420 AGCTAAACACCGAAGTATTAGGGGTCTCAGTCGACAGTGTGTTCTCGCATCTCGCGTGGG 479
Query 533 TCCAAACAGACAGGAAA-TCTGGAGGGCTTGGTGATCTGAACTATCCC-CTTATTTCAGA 590
|||||||||||| |||| || |||||||| ||||||||||| || ||| ||| |||| ||
Sbjct 480 TCCAAACAGACA-GAAAGTCAGGAGGGCTCGGTGATCTGAATTA-CCCACTTGTTTCGGA 537
Query 591 TGTCACTAAATCAATCTCAAAGTCGTTCGGAGTGCTCATCCATGATCAGGGAATAGCACT 650
| |||||||||| || ||||| ||||| ||||||||||||| ||| ||||| || |||||
Sbjct 538 TATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGACCAGGGCATTGCACT 597
Query 651 GAGAGGACTTTTCATAATCGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCT 710
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 598 GAGAGGACTTTTCATCATCGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCT 657
Query 711 TGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCA 770
||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | ||
Sbjct 658 TGGTATTGGTCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAATATGTTCA 717
Query 771 GGAAAACCCGGATGAAGTCTGCCCAGCAGGATGGAAGCC-GGGTGAGAAGTCAATGAAAC 829
|||||||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||||||
Sbjct 718 GGAAAACCCGGATGAAGTTTGCCCTGCGGGATGGAAGCCCGGG-GAGAAATCAATGAAAC 776
Query 830 CCGACCCAAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGA 871
| ||||| || ||||||||||| ||||| |||||||| ||||
Sbjct 777 CTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5