BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11660.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176 850 0.0
Ahg951862 jgi|Araly1|951862|scaffold_22200002.1 442 3e-123
Ahg940071 jgi|Araly1|940071|scaffold_600615.1 381 6e-105
Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1 313 2e-84
> Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176
Length=609
Score = 850 bits (460), Expect = 0.0
Identities = 531/566 (94%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 349 AATCTTCGTCCTCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACC 408
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 AATCTTCTTCATCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACC 104
Query 409 ATCAAAGCCACGCTTCATCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAA 468
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 TTCAAAGCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAA 164
Query 469 TCCACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACAA 528
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 165 TCCACCGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGA 224
Query 529 CAAAATCGGCATTTACTACGACCGGCTTGACGTCTACGCTACTTACCGGAGCCAACAAAT 588
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 225 CAAGATCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGAT 284
Query 589 CACTTTCCCAACATCAATCCCTCCCACGTATCAGGGACACAAAGATGTCGACATCTGGTC 648
|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 285 CACTTTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTC 344
Query 649 GCCGTTTGTTTACGGAACCTCCGTTCCCATCGCTCCTTTTAACGGCGTTAGTCTTGAC-A 707
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 345 GCCGTTTGTCTACGGAACCTCCGTTCCCATCGCTCCTTTTAACGGCGTTGGTCTCGACGA 404
Query 708 CCGATAAAGATAACGGTGTCGTTTTGTTGATCATTCGTGCTGATGGTAGAGTGAGGTGGA 767
| |||||||||||||| | | || |||||||||||||||||||||||||||| ||||||
Sbjct 405 C-GATAAAGATAACGGCGCCATTATGTTGATCATTCGTGCTGATGGTAGAGTTCGGTGGA 463
Query 768 AGGTTGGGACTTTTATCACCGGGAAGTATCATCTTCATGTGAAGTGTCCAGCATATATAA 827
||||||||||||||||||||||||||||||||||| |||||||||| || || ||||| |
Sbjct 464 AGGTTGGGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGTGCCCGGCGTATATTA 523
Query 828 ACTTCGGTAACAAAGCTAACGGAGTTATCGTCGGAGACAACGCCGTTAAGTATACGTTTA 887
|||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 524 ACTTCGGTAATAAAGCTACCGGAGTTATCATCGGAGATAACGCCGTTAAGTATACGTTTA 583
Query 888 CCACTAGTTGTAGTGTTAGTGTGTGA 913
||| ||||||||||||||||||||||
Sbjct 584 CCAGTAGTTGTAGTGTTAGTGTGTGA 609
> Ahg951862 jgi|Araly1|951862|scaffold_22200002.1
Length=515
Score = 442 bits (239), Expect = 3e-123
Identities = 288/312 (92%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 623 GGACACAAAGATGTCGACATCTGGTCGCCGTTTGTTTACGGAACCTCCGTTCCCATCGCT 682
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 205 GGACACAAAGAAATCAACATCTGGTCGCCGTTTGTCTACGGAACCTCCGTTCCCATCGCT 264
Query 683 CCTTTTAACGGCGTTAGTCTTGAC-ACCGATAAAGATAACGGTGTCGTTTTGTTGATCAT 741
||||||||||||||| |||||||| | |||||||||||||| | |||| ||||||||||
Sbjct 265 CCTTTTAACGGCGTTGGTCTTGACGAA-GATAAAGATAACGGCGCCGTTATGTTGATCAT 323
Query 742 TCGTGCTGATGGTAGAGTGAGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCT 801
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCGTGCTGATGGTAGAGTTCGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCT 383
Query 802 TCATGTGAAGTGTCCAGCATATATAAACTTCGGTAACAAAGCTAACGGAGTTATCGTCGG 861
||||||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||||
Sbjct 384 TCATGTGAAGTGTCCGGCGTATATTAACTTCGGTAATAAAGCTGCCGGAGTTATCATCGG 443
Query 862 AGACAACGCCGTTAAGTATACGTTTACCACTAGTTGTAGTGTTAGTGTGTGAAACGGCGA 921
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 444 AGATAACGCCGTTAAGTATACGCTTACCACTAGTTGTAGTGTTAGTGTGTGAAACGGCGA 503
Query 922 CGAAGAAAAATA 933
|| ||||||||
Sbjct 504 CGGTGAAAAATA 515
Score = 313 bits (169), Expect = 2e-84
Identities = 193/205 (94%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 375 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCATCAAAGCCACGCTTCATCCTCCAAG 434
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 1 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAAGCCACGTTTCCTCCTCCAAG 60
Query 435 ACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACT 120
Query 495 TCCAAATCACTCTCTCTTCCCGGAACCCTAACAACAAAATCGGCATTTACTACGACCGGC 554
||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||| |
Sbjct 121 TCCAAATCACTCTTTCTTCCCGTAACCCTAATGACAAGATCGGCGTTTACTACGACCGCC 180
Query 555 TTGACGTCTACGCTACTTACCGGAG 579
|||| ||||||||||| ||||||||
Sbjct 181 TTGAAGTCTACGCTACCTACCGGAG 205
> Ahg940071 jgi|Araly1|940071|scaffold_600615.1
Length=689
Score = 381 bits (206), Expect = 6e-105
Identities = 464/587 (79%), Gaps = 24/587 (4%)
Strand=Plus/Plus
Query 341 TGGTCAATAATCTTCGTCCTCTTCATCAT-CTTCCTAACAATCCTCCTCA-TTTGGGCAA 398
||| ||||||| | |||||||||| || ||| || | ||| ||||| | |||||||||
Sbjct 97 TGGCCAATAATAATAATCCTCTTCATAATCCTT-CTCATAATTCTCCT-AGTTTGGGCAA 154
Query 399 TTCTCCAACCATCAAAGCCACGCTTCATCCTCCAAGACGCCACCGTCTACGCCTTCAACG 458
| || ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 155 TCCTTCAACCATCAAAACCACGCTTCATCCTCCAAGACGCCACCGTCTTCAACTTCAACG 214
Query 459 TCTCCGGCAATCCACCGAACCTCCTCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGA 518
||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
Sbjct 215 TCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAAATCACTCTCTCCTCTCGTA 274
Query 519 ACCCTAACAACAAAATCGGCATTTACTACGACCGGCTTGACGTCTACGCTACTTACCGGA 578
|||||||| |||| ||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 275 ACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACGTCTACGCTTCTTACCGGA 334
Query 579 GCCAACAAATCACTTTCCCAACATCAATCCCTCCCACGTATCAGGGACACAAAGATGTCG 638
|||||||||||||||| || || || || ||| | || ||||| ||||||||||| |||
Sbjct 335 GCCAACAAATCACTTTTCCGACTTCGATGCCTACGACTTATCAAGGACACAAAGAAGTCA 394
Query 639 ACATCTGGTCGCCGTTT-GTTTACGGA-ACCTCCGTTCCCATCGCTCCTTTTAACGGCGT 696
|| | ||||| || ||| || ||| || || || ||| | ||||||| |||| | |
Sbjct 395 ACGTTTGGTCTCC-TTTCGTCGGTGGATAC-TCTGTCCCCGTAGCTCCTTACAACGCCTT 452
Query 697 -TAGTCTTGA-CACCGATAAAGATAACGGTGTC--GTTT-TGTTGAT-CATTCGTGCT-G 749
|| ||| || || || | | | || || | | | ||||| | | ||| | || |
Sbjct 453 GTA-TCTCGATCAG-GACCAT-ACA-CG-TGGCACGATCATGTTGGTGC-TTCAT-CTTG 505
Query 750 ATGGTAGAGTGAGGTGGAAGGTTGGGACTTTTATCACCGGGAAGTATCATCTTCATGTGA 809
| || ||||| | ||||| || || | || |||||||| || |||||||| || || |
Sbjct 506 ACGGCAGAGTTCGTTGGAAAGTCGGTTCCTTCATCACCGGAAAATATCATCTCCACGTTA 565
Query 810 -AGTGTCCAGCATATATAAACTTCGGTAACAAAGCTAACGGAGTTATCGTCGGAGACAAC 868
| ||||| || | ||| ||||| || || | ||| |||||||||||||||| | |||
Sbjct 566 GA-TGTCCGGCGTTTATCAACTTTGGGAATAGTGCTTCCGGAGTTATCGTCGGAAATAAC 624
Query 869 GCCGTTAAGTATACGTTTACCACTAGTTGTAGTGTTAGTGTGTGAAA 915
||||||||||| ||| | ||||| | |||||||||||| || |||||
Sbjct 625 GCCGTTAAGTACACGCTCACCACAACTTGTAGTGTTAGCGTCTGAAA 671
> Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1
Length=754
Score = 313 bits (169), Expect = 2e-84
Identities = 414/529 (78%), Gaps = 30/529 (6%)
Strand=Plus/Plus
Query 363 TCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACCATCAAAGCCACGCT 422
||||| |||| |||||||| ||||| |||||| ||| ||||||||| |||| ||| | |
Sbjct 168 TCATCGTCTTGATAACAATCTTCCTCGTTTGGGTAATCCTCCAACCAACAAAACCAAGAT 227
Query 423 TCATCCTCCAAGACGCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCC 482
||||||||||||||||||||||||||||||| ||| |||| | ||| || ||||| |
Sbjct 228 TCATCCTCCAAGACGCCACCGTCTACGCCTTTAACCTCTC-G-CAA-CCT---AACCTAC 281
Query 483 TCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACC-CTAACAACAAAATCGGCATT 541
||||||| ||||| || ||||| || |||| || |||| | ||| || |||||| ||
Sbjct 282 TCACCTCAAACTTTCAGATCACAATCGCTTCACGTAACCGC-AACTCCAGAATCGGAATC 340
Query 542 TACTACGACCGGCTTGACGTCTACGCTACTTACCGGAGCCAACAAATCACTTTCCCAACA 601
||||||||||||||| |||||||||||| |||||||| ||| ||||||||||| | |||
Sbjct 341 TACTACGACCGGCTTCACGTCTACGCTAGTTACCGGAACCAGCAAATCACTTTACGTACA 400
Query 602 TCAATCCCTCCCACGTATCAGGGACACAAAGATGTCGACATCTGGTCGCCGTTTGTTTAC 661
| || ||||| ||||| || || || ||||| | | || | ||||| || ||||| |||
Sbjct 401 GCCATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTTGTATAC 460
Query 662 GGAACCTCCGTTCCC-ATCGCTCCTTTTAACGGCGTTAG-TCTTGAC-ACCGAT-AAAGA 717
|||| |||||| ||| ||||||||||| |||| || | | ||||| | || || ||| |
Sbjct 461 GGAAACTCCGT-CCCTATCGCTCCTTTCAACG-CGGTGGCTCTTGGCGAC-GAGCAAA-A 516
Query 718 TAACGG-TGTCGTTTTGTTGATCATTCGTGCTGATGGTA-GAGTGAGGTGGAAGGTTGGG 775
| ||| | | || |||||| || || || ||||| | | |||||||||||||| |||
Sbjct 517 TCGCGGGTTT-GTCACGTTGATTATACGCGCCGATGG-ACGCGTGAGGTGGAAGGTCGGG 574
Query 776 ACTTTTATCACCGGGAAGTATCATCTTCATGTGAAGT-GTC-CAGCATATATAAA-CTTC 832
||| |||| || |||||||||||||| | ||| || ||| | || || ||||| ||
Sbjct 575 ACTCTTATTACAGGGAAGTATCATCTCCTTGTTC-GTTGTCTC-GCGTACATAAATCT-- 630
Query 833 GG-TAACAAAGCTAACGGAGTT-ATCGTCGGAGACAACGCCGTTAAGTA 879
|| | | ||||| ||||||| || ||||| || ||||||||||||||
Sbjct 631 GGCTGATAAAGCCGCCGGAGTTCAT-GTCGGCGAAAACGCCGTTAAGTA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5