BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11780.2 Length=823 Score E Sequences producing significant alignments: (Bits) Value Ahg478524 jgi|Araly1|478524|fgenesh2_kg.3__1225__AT3G11780.1 614 4e-175 > Ahg478524 jgi|Araly1|478524|fgenesh2_kg.3__1225__AT3G11780.1 Length=697 Score = 614 bits (332), Expect = 4e-175 Identities = 427/470 (91%), Gaps = 17/470 (4%) Strand=Plus/Plus Query 4 TCTGTCTTTGTCTCTTGCTTGTTTAGTCTCTCCTCTCCTCCTCGTCCTCAATCATCATCA 63 |||||||||||||||||||||||||| ||| | ||||||||| | ||||||| Sbjct 1 TCTGTCTTTGTCTCTTGCTTGTTTAG-------TCT--T-CTCGTCCTC-A--ATCATCA 47 Query 64 TCTGAGAATTCGCAGCTTTTGCTTCTTCGATAGAAAATCTAATTATCATCAATCATGTCT 123 ||||||||||||| ||||||| |||||||| |||| | ||||||||||||||||||||| Sbjct 48 TCTGAGAATTCGCTGCTTTTGGTTCTTCGAGAGAATACCTAATTATCATCAATCATGTCG 107 Query 124 AA-GTTCACGGGATTCT-CATCTCTCGCTATCTCTTATTTTCTCTTGGTTTCAACGATTG 181 || ||| |||||||| | | ||||||||||||||||||||||| || ||||||||||||| Sbjct 108 AAGGTT-ACGGGATT-TACTTCTCTCGCTATCTCTTATTTTCTTTTCGTTTCAACGATTG 165 Query 182 TTGCAGCCACCGATGTTCACTACTGCGATAATAACGAAGAGTATGAAGTAAAAGTACAAG 241 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 166 TCGCAGCCACCGATGTTCACTACTGCGATAATAATGAAGAGTATGAAGTAAAAGTACAAG 225 Query 242 GAGTTGATATAACTCCTTATCCTATAGCTAGAGGCGAGCCAGCTACTTTCAGAATTTCTG 301 |||||||||||| |||||||||| |||||||||||| |||||| |||||||| ||||||| Sbjct 226 GAGTTGATATAATTCCTTATCCTGTAGCTAGAGGCGCGCCAGCCACTTTCAGCATTTCTG 285 Query 302 CTAACACAGACACTGAGATCTCGAGCGGCAAGTTGGTGATCGAAGTTTCCTACTTTGGAT 361 |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 286 CTAACACAGACACTGAGATCTCTAGCGGCAAGTTGGTGATCGAAGTCTCATACTTTGGAT 345 Query 362 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCCATTG 421 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 346 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCGGTTG 405 Query 422 GAGATTTCTTGGTAGCGCACTCGCAAGTTCTTCCCGGATATACCCCTCCT 471 |||||||| |||||| |||||||||||||| ||||||||||| |||||| Sbjct 406 GAGATTTCGTGGTAGAACACTCGCAAGTTCTACCCGGATATACTCCTCCT 455 Score = 316 bits (171), Expect = 1e-85 Identities = 230/256 (90%), Gaps = 14/256 (5%) Strand=Plus/Plus Query 526 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 515 Query 586 AAGTTCTCATTTGATATTGGATTTGGATCCTCCGTGGCCGACATGTAGAGCTGATTTGCT 645 || ||||||||||| ||||||||| ||| |||||||||||||| ||||||| | | | Sbjct 516 AAATTCTCATTTGAGATTGGATTTTTATCATCCGTGGCCGACATTTAGAGCT--TAT--T 571 Query 646 CGACGGGATACACCATCTTGTTCTATACCATGGAACCACTCTCATTTATTTTGTATAAAA 705 || | | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 572 CG-C----T----CATCTTGTTCTATACCATTAAACCACTCTCATTTATTTTGTATAAAA 622 Query 706 TACACTCTCCTGCTATACATAATTGTTGATCAAAAACCCTTTGAAAATTCTCATTCTGGA 765 |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 623 TACACTCTTTT-CTATACATAATTGTTGATCAAAACCCCTTTGAAAATTCTCATTCTGGA 681 Query 766 CCATTCATGAATCCCC 781 |||||||||||||||| Sbjct 682 CCATTCATGAATCCCC 697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30422087766 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5