BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11840.1 Length=1598 Score E Sequences producing significant alignments: (Bits) Value Ahg341304 jgi|Araly1|341304|fgenesh1_pg.C_scaffold_3001067 2104 0.0 > Ahg341304 jgi|Araly1|341304|fgenesh1_pg.C_scaffold_3001067 Length=1392 Score = 2104 bits (1139), Expect = 0.0 Identities = 1288/1360 (95%), Gaps = 9/1360 (1%) Strand=Plus/Plus Query 50 ATGGATCAAGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTA 109 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCATGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTT 60 Query 110 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAACATC 169 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAGCATC 120 Query 170 GTTAAATGGCTCGAAAAGGTCCCTTCTTGTCCCGTCACGAAGCAACCTCTTCCCTTAGAC 229 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 121 GTTAAATGGCTCAAAAAGGTCCCTTCTTGTCCTGTCACGAAGCAACCTCTTCCCTTAGAC 180 Query 230 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTTATCCAACACTGGTGCGTCGAGAAC 289 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct 181 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTGATCCAACATTGGTGCGTTGAGAAC 240 Query 290 GAGACACGTGGCGTTGTCAGAATCTCTACACCTCGAGTTCCTCCTGGAAAACTTAACGTC 349 ||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct 241 GAGACTCGTGGCGTTGTCAGAATCTCTACTCCTCGAGCTCCTCTTGGAAAACTTAACGTC 300 Query 350 GTCGAAGAGATCAAGAATCTCAAAAAGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 409 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 301 GTCGAGGAGATCAAGAATCTCAAAAGGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 360 Query 410 TTGCAGAAGCTTGAAGTTTTGGCAATGGACGGAAATAACAGAAGATTGATGTGTGAATGT 469 ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| | Sbjct 361 TTGCAGAAGCTTGAAGTTTTGGCAATGGAGGGAAATAACAGGAGATTGATGTTTGAAGGA 420 Query 470 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGACGGA 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGAGGGA 480 Query 530 CGACGTCGTATCAAAGGACTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTATTCCA 589 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 481 CGACGTCGTATCAAAGGGCTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTGTTCCA 540 Query 590 TCAAACGACGCAAAAACAATCTTGATGGAAAACGATCGAGTTATGGAATCGTTGACTTGG 649 |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct 541 TCAAACGACGCAAAAACAATTTTGATCGAAAACGATCGAGTCATGGAATCGTTGACTTGG 600 Query 650 GTTTTACACCAAGAAGACTTTCTCAGTAAGGCTTATACAATTGTGCTATTGAGGAATCTA 709 |||||||||||||||||||| ||| ||||||||||||||||||| | || | ||||||| Sbjct 601 CTTTTACACCAAGAAGACTTTTTCAATAAGGCTTATACAATTGTGATCTTAAAGAATCTA 660 Query 710 ACGGAATACACTTCCTCTCATATCGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 769 | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 ATGGAACACACTTCCTCTCATATTGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 720 Query 770 ATAGGGTTTCTCAAGGATGTTGTAAATAGTGTTAATCGGACGAGCCCTACCGTGAGAGAA 829 |||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 721 ATAGAGTTTCTCAAGGATGTAGTAAGCAGTCTTAATCGGACGAGCCCTACCGTGAGAGAT 780 Query 830 ACGGTACAGTCATCATCAAGGCCTAGCTT-GGGAAAAACGGAACCATCAAAACTTGATCA 888 |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 781 ACGGTACA---ATCATCAAGGCCTAGCTTGGGGAAAAA-GGAACCATCAAAACTTGATCA 836 Query 889 TAGTTTGGTCATCAAACAAGCGGTGACTGCCGCGCTGATGATTCTTTTAGAGACTTCTTC 948 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 837 TAGTTTGGTCATTAAACAAGCGGTGACTGCAGCGCTGATGATTCTTTTAGAGACTTCTTC 896 Query 949 GTGGAGCCGAAACCGATC-ACTCCTTGTGGATCTCGGTGCGGTTTCTGAACTCATCGAAC 1007 |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| Sbjct 897 GTGGAGCCGAAACCGATCGA-TCCTTGTGGATCTCGATGCGGTTTCTGAACTCATCGAAC 955 Query 1008 TCGAAATAAGCTACACTGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTATCTC 1067 | ||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||| Sbjct 956 TGGAAATGAGCTACTCAGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTGTCTC 1015 Query 1068 GTTTATGTTGCTGTGCGAACGGTAGAGCCGAGATTCTTGCTCATAGGGGCGGAATCGCGG 1127 |||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1016 GTTTATGTTGTTGCGCCAACGGTAGAGCCGAGATTCTTTCTCATAGGGGCGGAATCGCGG 1075 Query 1128 TTGTGACAAAGCGGCTATTGAGGGTTTCACCTGCGGCAGACGATAGAGCTATCTCTATCC 1187 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1076 TTGTGACGAAGCGGCTATTGAGGGTTTCACCTGCAGCAGACGATAGAGCTATCTCTATCC 1135 Query 1188 TAACTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTTAATGTTG 1247 ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1136 TAAGTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTAAACGTTG 1195 Query 1248 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1255 Query 1308 AAGCAAAAGAGATACTAAAAGATCATTTTGATGAGTGGAAGAAGTTTCCATGTATTGACA 1367 |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1256 AAGCAAAAGATATACTTAAAGATCATTTTGATGAGTGGAAGAAGTTTCCGTGTATCGACA 1315 Query 1368 TAACTCTTCTCACTAAGCTGCTAAGCATC-TCACCCAAAG 1406 ||||||||||||||||||| |||||| || |||||||||| Sbjct 1316 TAACTCTTCTCACTAAGCTTCTAAGC-TCCTCACCCAAAG 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59877865140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5