BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11890.2
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341309 jgi|Araly1|341309|fgenesh1_pg.C_scaffold_3001072 1188 0.0
Ahg478533 jgi|Araly1|478533|fgenesh2_kg.3__1234__AT3G11890.1 808 0.0
> Ahg341309 jgi|Araly1|341309|fgenesh1_pg.C_scaffold_3001072
Length=3168
Score = 1188 bits (643), Expect = 0.0
Identities = 1153/1384 (83%), Gaps = 96/1384 (7%)
Strand=Plus/Plus
Query 335 AACTCCTCAATCACAAGCTGAGTTAAGAG-ACGCTCTTGCGGATACACACTTTACCACTC 393
|||| |||||| | ||||||||||||||| | || | | |||||| || | |||
Sbjct 1812 AACTTCTCAATTAGAAGCTGAGTTAAGAGAAAGC-ATGGAGGATACGCAAGAAAGTACTT 1870
Query 394 CTGTTCCCACTGTGGTGGTACCTGCTCTTCCTCTACCTGAACAATTCATTTTGCACAAGC 453
| ||| ||| | |||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 1871 TTCTTCACAC--T-GTGGTACCTGCTCTTCCTCTGCCTGAACATTTCATTATGCACAAGC 1927
Query 454 CTGAAACTTCTCATTCGCAAGTTCAGTTCAGAGATTG-TATTGCGAATACGCA-TAAA-- 509
|||||| |||| | || |||| | |||| ||||| | | ||||| ||||||| |||
Sbjct 1928 CTGAAAATTCTGAGTCTCAAGCTGAGTTAAGAGA-CGTTCTTGCGGATACGCACAAAACT 1986
Query 510 ACTACTCCTCTTCACACAGTGGT-G--CATTCTCTTCCGGTAACT-GAACAT-TCCACTT 564
||||||||| ||| ||| ||||| | | | ||| || |||| | | | ||| | |
Sbjct 1987 ACTACTCCTGTTCCCACTGTGGTGGTACCTACTCCTCTTCAAACTGGGATGTCTCCTC-T 2045
Query 565 TGC-AGAAGCCT--ACATCTTCCCAGT-CACAAG-TTG--AGTTAAGAGAGTCTA-TTGC 616
| | | | ||| ||| |||| | || ||| || | || | | || | ||
Sbjct 2046 T-CTATTA-CCTGAACA-CTTCGTTTTGCAGAAGCCTGCAACTTCTCA-A-TC-ACAAGC 2099
Query 617 GGATACTCATGGAACTACTCCTCTTCAAACAGAGATTTCTTCTCTTCCAT-TACCTCAAC 675
|||||| || | |||||||| |||||| |||| ||| |||||| || | ||||| | |
Sbjct 2100 GGATACGCACGAAACTACTCTTCTTCAGACAGTGATACCTTCTC-CCCCTGTACCTGACC 2158
Query 676 ACTT-C-GTTTTGCAGAAGCCCGCAACTTCTCA-ATCACAAGC---G----G-AT--ACA 722
| || | | | |||||||||| ||| ||||| | ||||||||| | | || | |
Sbjct 2159 A-TTACAG-TCTGCAGAAGCCTGCAGCTTCT-AGATCACAAGCTGAGTTAAGAATGAAGA 2215
Query 723 CACG-AAA-CTACTCTTCTTCACACA-ATACTGCCTTCTCTTCCTGTACCTGAACTA-TG 778
| | ||| |||||||| |||||||| | |||||||||||||||||||||||| | ||
Sbjct 2216 TAAGCAAAGCTACTCTTGTTCACACAGCGA-TGCCTTCTCTTCCTGTACCTGAAC-ATTG 2273
Query 779 TACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGC-GAATACGCGCA 837
||||||||| ||||| |||||||| |||||||||||||||||||| | ||| || | ||
Sbjct 2274 CACTTTGCAGGAGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACA 2332
Query 838 AAGCTACTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTC 897
|||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 2333 AAGCTATTCTTGTTCA--CA-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACAGTC 2389
Query 898 TACAGAAGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTA 957
| | ||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 2390 TGCGGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGATTGGAGACACGCAAAGCTA 2449
Query 958 CTCTTGTTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCA 1017
||||| |||| || ||||||| |||||||||||||||||||||||||| ||| ||| |
Sbjct 2450 CTCTTTTTCA--CA-CAGCGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGA 2506
Query 1018 AGCCTTCAACTTCTCAATCACAAGCTGAGGTAAGAAC-GTTGACACACAAAGCTACCCAT 1076
||||||||||||||||||||||||||||| ||||| | | | || | ||||||||| | |
Sbjct 2507 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCGGAT-ACGCGCAAAGCTACTCTT 2565
Query 1077 GTTCACACAGCGATGCCTTCCCTTTCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCA 1136
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2566 GTTCACACAGTGGTGCCTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCA 2625
Query 1137 ACTTCTCAATCGCAAGCTGA----A-A--C-TAGTCGTGT-T-C--A--AA-CT-GT-G- 1178
||||||||||| |||||||| | | | | || ||| | | | || || || |
Sbjct 2626 ACTTCTCAATCACAAGCTGAGCTGAGAGACCTGGTTGTGGATACCCACGAAGCTAGTCGT 2685
Query 1179 GA--AC-CTGAGG--CCTG----T---CCTGATTTCACCTCAGTAGACAAACCGGAGATA 1226
| || ||| || |||| | |||||||||||||||||||||||||||||||||
Sbjct 2686 GTTCACACTGTGGAACCTGAGGCTTATCCTGATTTCACCTCAGTAGACAAACCGGAGATA 2745
Query 1227 GTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGATCACTGCAAGAA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2746 GTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGATCACTTCAAGAT 2805
Query 1287 AGTAGGAA-GAATCAGGATAGAAGAGTGGAGATCCACAGGAGGCGTGCGGGTCACAAGCC 1345
|||| || |||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 2806 TGTAG-AATGAATCAGGATAGAAGAGTGGAGGTTCACAGGAGACGTGCGGGTCACAAGCC 2864
Query 1346 CATAAGGTTTCCAAGAGTGATGTGTAGCTCTGTTGTTATGGATAATGAGAAGCTGAGAGT 1405
|||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 2865 CATAAGGTTTCCTAGAGTGATGTGCAGCTCTGTAGTTATTGATAATGAGAAGCTGAGAGT 2924
Query 1406 GTTGAATCTGGAGAAGAAGGTTGAGAAAGCGGGAGGGTTGAACGAATGGGTTGGATCTAT 1465
||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 2925 GTTGAATCTAGAGAAGAAGGTTGAGAAAGCGGGTGGGTTGCACGAATGGGTTGGATCTAT 2984
Query 1466 AGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAGGATGAGTAAGTTTCAGAT 1525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2985 AGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAAGATGAGTAAGTTTCAGAT 3044
Query 1526 GGCGAATTTGACAATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGTTGGGCCAAGAAG 1585
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045 GGCGAATTTGACCATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGTTGGGCCAAGAAG 3104
Query 1586 AAAGCTTATACATGCAATAGGTTGTGTCTATCACCCACATTGTCTACGTGCTTCCTTTAA 1645
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3105 AAAGCTTATACATGCAATTGGTTGTGTCTATCACCCACATTGTCTACGTGCTTCCTTTAA 3164
Query 1646 CTGA 1649
||||
Sbjct 3165 CTGA 3168
Score = 739 bits (400), Expect = 0.0
Identities = 843/1043 (81%), Gaps = 86/1043 (8%)
Strand=Plus/Plus
Query 59 GGTTACAATGGCGAAGCTAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAA 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 GGTTATAATGGCGAAGCTAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAA 1694
Query 119 GTTGGGTTTTGATGGAGAAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAAAATCTTCAT 178
||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1695 GTTAGGTTTTGATGGAGAAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCAT 1754
Query 179 TGTCTTGCCTTCTCTTCCACTTCCTCAACAACAGCATTTCACTTTGGAGAAACCTGCAAT 238
||| ||||||||||||||||| ||| ||||||| | | |||| ||||||||||||||||
Sbjct 1755 TGTTTTGCCTTCTCTTCCACTACCTGAACAACATC-T--CACTATGGAGAAACCTGCAAT 1811
Query 239 ATCTCCTCAATTAGAAGCTGGGTTTAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTT 298
| || ||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| ||
Sbjct 1812 AACTTCTCAATTAGAAGCTGAGTTAAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTT 1871
Query 299 TGTTCACACTGTGGTGCCTTCTCTTCCTCTGCCTGAA-A---C-T----C-CT--C---A 343
| ||||||||||||| ||| ||||||||||||||||| | | | | | | |
Sbjct 1872 TCTTCACACTGTGGTACCTGCTCTTCCTCTGCCTGAACATTTCATTATGCACAAGCCTGA 1931
Query 344 A--T-C--A--C--AAGCTGAGTTAAGAGACGCTCTTGCGGATACACACTTTAC--C-AC 391
| | | | | |||||||||||||||||| |||||||||||| ||| || | ||
Sbjct 1932 AAATTCTGAGTCTCAAGCTGAGTTAAGAGACGTTCTTGCGGATACGCACAAAACTACTAC 1991
Query 392 TCCTGTTCCCACTGTGGTGGTACCTGCTCTTCCTCTACCTGA-ACAAT-TCATTTTGC-A 448
||||||||||||||||||||||||| ||| || || | ||| | | || | || | |
Sbjct 1992 TCCTGTTCCCACTGTGGTGGTACCTACTCCTCTTCAAACTGGGATG-TCTCCTCTT-CTA 2049
Query 449 CAAGCCTGAA-ACTTC-TCATTCGCA-A-GT-T-CAG-TTCAGAGATTGTATTGCGAATA 501
| |||||| ||||| | || ||| | | | || ||| | || | ||| |||
Sbjct 2050 TTA-CCTGAACACTTCGTT-TT-GCAGAAGCCTGCAACTTCTCA-ATCACAA-GCGGATA 2104
Query 502 CGCATAAAACTACTCCTCTTCACACAGTGGTGCATTCTCTTCCGGTAACTGAACATTCCA 561
|||| ||||||||| |||||| |||||| | | ||||| || ||| |||| |||| ||
Sbjct 2105 CGCACGAAACTACTCTTCTTCAGACAGTGATACCTTCTCCCCCTGTACCTGACCATTACA 2164
Query 562 CTTTGCAGAAGCCTACATCTTCCCAG-TCACAAGTTGAGTTAAGAGAGTCTATTGCGGAT 620
| ||||||||||| || |||| || ||||||| |||||||||| | | | | ||
Sbjct 2165 GTCTGCAGAAGCCTGCAGCTTCT-AGATCACAAGCTGAGTTAAGA-A-TGAA--G---AT 2216
Query 621 ACTCATGGAACTACTCCTCTTCAAACAGAGATTTCTTCTCTTCCAT-TACCTCAACACTT 679
| || | |||||| | |||| |||| ||| |||||||||| | ||||| |||| ||
Sbjct 2217 AAGCAAAG--CTACTCTTGTTCACACAGCGATGCCTTCTCTTCC-TGTACCTGAACA-TT 2272
Query 680 -CGTTTTGCAGAAGCCCGCAACTTCTCAATCACAAGCGGA-T-A----C--A--CACG-A 727
| ||||||| |||| |||||||| |||||||||| || | | | | ||| |
Sbjct 2273 GCACTTTGCAGGAGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAAACACACA 2332
Query 728 AA-CTACTCTTCTTCACACAAT-ACTGCCTTCTCTTCCTGTACCTGAACTATGTACT-T- 783
|| ||| |||| |||||||| | | |||||||||||||||||||||||| || ||| |
Sbjct 2333 AAGCTATTCTTGTTCACACAGTGA-TGCCTTCTCTTCCTGTACCTGAAC-AT-TACAGTC 2389
Query 784 TGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTA 843
||| ||||||||||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct 2390 TGCGGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGATTGGAGACACGCAAAGCTA 2449
Query 844 CTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACAGA 903
||||| ||||| | |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2450 CTCTTTTTCAC--A-CAGCGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGA 2506
Query 904 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTCTTG 963
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2507 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTG 2566
Query 964 TTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTT 1023
||||| ||| | | | ||||| ||||||||| ||||||||| || | | | ||||||
Sbjct 2567 TTCACACAGT-G-G-TGCCTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTG 2623
Query 1024 CAACTTCTCAATCACAAGCTGAG 1046
|||||||||||||||||||||||
Sbjct 2624 CAACTTCTCAATCACAAGCTGAG 2646
Score = 556 bits (301), Expect = 1e-157
Identities = 457/531 (86%), Gaps = 16/531 (3%)
Strand=Plus/Plus
Query 631 CTACTCCTCTTCAAACAGAGATTTCTTCTCTTCCATTACCTCAACACTTCGTTTTGCAGA 690
|||||||||||||||| | ||| ||| |||||| ||||||| ||||||||||||||||||
Sbjct 2015 CTACTCCTCTTCAAACTGGGATGTCTCCTCTTCTATTACCTGAACACTTCGTTTTGCAGA 2074
Query 691 AGCCCGCAACTTCTCAATCACAAGCGGATACACACGAAACTACTCTTCTTCACACAAT-A 749
|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| | |
Sbjct 2075 AGCCTGCAACTTCTCAATCACAAGCGGATACGCACGAAACTACTCTTCTTCAGACAGTGA 2134
Query 750 CTGCCTTCTCTTCCTGTACCTGAACTATGTAC--TTTGCAGAAGCCTGCAACTTCTCA-A 806
| ||||||| |||||||||| || || ||| | |||||||||||||| ||||| | |
Sbjct 2135 -TACCTTCTCCCCCTGTACCTG-ACCAT-TACAGTCTGCAGAAGCCTGCAGCTTCT-AGA 2190
Query 807 TCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATG 866
|||||||||||||||||| ||| | ||||||||||||||||||| || ||||||||
Sbjct 2191 TCACAAGCTGAGTTAAGAATGAAGATAAGCAAAGCTACTCTTGTTCA--CA-CAGCGATG 2247
Query 867 CCTTCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAATCACAA 926
||||||||||||||||||||||||| || | | ||| ||||| |||||||| ||||||||
Sbjct 2248 CCTTCTCTTCCTGTACCTGAACATTGCACTTTGCAGGAGCCTACAACTTCTAAATCACAA 2307
Query 927 GCTGAGTTAAGAGCG-AAGACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATACCTTC 985
|||||||||||| || || || | |||||||| |||||||||| | ||| ||| |||||
Sbjct 2308 GCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTTGTTCAC--A-CAGTGATGCCTTC 2363
Query 986 TCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAATCACAAGCTGA 1045
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 2364 TCTTCCTGTACCTGAACATTACAGTCTGCGGAAGCCTGCAACTTCTCAATCACAAGCTGA 2423
Query 1046 GGTAAGAACGTTGACACACAAAGCTACCCATGTTCACACAGCGATGCCTTCCCTTTCTGT 1105
| ||||| | ||||| ||||||||| | | ||||||||||||||||||| ||| ||||
Sbjct 2424 GTTAAGATTGGAGACACGCAAAGCTACTCTTTTTCACACAGCGATGCCTTCTCTTCCTGT 2483
Query 1106 AACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCGCAAGCTGA 1156
| ||||||||| | | | ||||||||| ||||||||||||| ||||||||
Sbjct 2484 ACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAATCACAAGCTGA 2534
Score = 333 bits (180), Expect = 3e-90
Identities = 314/376 (84%), Gaps = 20/376 (5%)
Strand=Plus/Plus
Query 782 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGC 841
||||||||||||||||||||||||||||||||| || | | | | | || ||| |
Sbjct 2067 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCGGA-T-ACG--C-A---CG---AAA-C 2114
Query 842 TACTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACA 901
||||||| |||| | | ||| ||| ||||||| ||||||||||| ||||||||||| ||
Sbjct 2115 TACTCTTCTTCA-G-A-CAGTGATACCTTCTCCCCCTGTACCTGACCATTACAGTCTGCA 2171
Query 902 GAAGCCTTCAACTTCTCA-ATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTC 960
||||||| || ||||| | ||||||||||||||||||| ||||| ||||||||||||
Sbjct 2172 GAAGCCTGCAGCTTCT-AGATCACAAGCTGAGTTAAGAATGAAGATAAGCAAAGCTACTC 2230
Query 961 TTGTTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGC 1020
|||||||| | ||||||| ||||||||||||||||||||||||| || | | | |||
Sbjct 2231 TTGTTCAC--A-CAGCGATGCCTTCTCTTCCTGTACCTGAACATTGCACTTTGCAGGAGC 2287
Query 1021 CTTCAACTTCTCAATCACAAGCTGAGGTAAGAACGTTGACACACAAAGCTACCCATGTTC 1080
|| |||||||| |||||||||||||| |||||||| ||||||||||||| | |||||
Sbjct 2288 CTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAAACACACAAAGCTATTCTTGTTC 2347
Query 1081 ACACAGCGATGCCTTCCCTTTCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTT 1140
|||||| ||||||||| ||| ||||| ||||||||| || | ||| ||||||||||||||
Sbjct 2348 ACACAGTGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTGCGGAAGCCTGCAACTT 2407
Query 1141 CTCAATCGCAAGCTGA 1156
||||||| ||||||||
Sbjct 2408 CTCAATCACAAGCTGA 2423
Score = 320 bits (173), Expect = 2e-86
Identities = 434/552 (79%), Gaps = 49/552 (9%)
Strand=Plus/Plus
Query 408 GTGGTACCTGCTCTTCCTCTACCTGAACAATT-CATTTTGCACAAGCCTGAAACTTCTCA 466
||| ||||| ||| ||| |||||| || ||| || | |||| ||||||| | ||||| |
Sbjct 2131 GTGATACCTTCTCCCCCTGTACCTG-ACCATTACAGTCTGCAGAAGCCTGCAGCTTCT-A 2188
Query 467 -TTCGCAAGTTCAGTTCAGAGATTGTATTGCGAATACGCATAAAACTACTCCTCTTCACA 525
|| |||| | |||| | ||| || | | ||| || ||| |||||| | ||||||
Sbjct 2189 GATCACAAGCTGAGTT-A-AGAATG-A---AG-ATAAGC--AAAGCTACTCTTGTTCACA 2239
Query 526 CAGTGGTGCATTCTCTTCCGGTAACTGAACATTCCACTTTGCAGAAGCCTACATCTTCCC 585
||| | ||| ||||||||| ||| ||||||||| |||||||||| |||||||| ||||
Sbjct 2240 CAGCGATGCCTTCTCTTCCTGTACCTGAACATTGCACTTTGCAGGAGCCTACAACTTCTA 2299
Query 586 AGTCACAAGTTGAGTTAAGAGAGTCTATTGCGGATACTCATGGAA-CTACTCCTCTTCAA 644
| ||||||| |||||| | ||| | |||| || || || ||| || | ||||
Sbjct 2300 AATCACAAGCTGAGTT-A-AGA----A---CGGAAACACA-CAAAGCTATTCTTGTTCAC 2349
Query 645 ACAGAGATTTCTTCTCTTCCAT-TACCTCAACACTT-C-GTTTTGCAGAAGCCCGCAACT 701
|||| ||| |||||||||| | ||||| |||| || | | | ||| |||||| ||||||
Sbjct 2350 ACAGTGATGCCTTCTCTTCC-TGTACCTGAACA-TTACAG-TCTGCGGAAGCCTGCAACT 2406
Query 702 TCTCAATCACAAGC---G----GA-T--ACACACG-AAA-CTACTCTTCTTCACACA-AT 748
|||||||||||||| | || | | ||||| ||| |||||||| ||||||||
Sbjct 2407 TCTCAATCACAAGCTGAGTTAAGATTGGAGACACGCAAAGCTACTCTTTTTCACACAGCG 2466
Query 749 ACTGCCTTCTCTTCCTGTACCTGAACTA-TGTACTTTGCAGAAGCCTGCAACTTCTCAAT 807
| |||||||||||||||||||||||| | | || | | ||||||||| ||||||||||||
Sbjct 2467 A-TGCCTTCTCTTCCTGTACCTGAAC-ATTATAGTATACAGAAGCCTTCAACTTCTCAAT 2524
Query 808 CACAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATGC 867
|||||||||||||||||||| |||||||||||||||||||||||||| ||| | | |||
Sbjct 2525 CACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGC 2581
Query 868 CTTCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAATCACAAG 927
|||| ||||||||| ||||||||| || | | ||||||||| ||||||||||||||||||
Sbjct 2582 CTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAG 2641
Query 928 CTGAGTTAAGAG 939
||||| | ||||
Sbjct 2642 CTGAGCTGAGAG 2653
Score = 202 bits (109), Expect = 8e-51
Identities = 331/431 (77%), Gaps = 44/431 (10%)
Strand=Plus/Plus
Query 414 CCTGCTCTTCCTCTACCTGAACAATT-CATTTTGCACAAGCCTGA-AACTTCTCATTCGC 471
||| |||||||| ||||||||| ||| || |||||| ||||| | ||||||| | || |
Sbjct 2248 CCTTCTCTTCCTGTACCTGAAC-ATTGCACTTTGCAGGAGCCT-ACAACTTCTAAATCAC 2305
Query 472 AAGTTCAGTTCAGAGATTGTATTGCGAATACGCATAAAACTACTCCTCTTCACACAGTGG 531
||| | |||| | ||| | | ||| || || ||| ||| || | |||||||||||
Sbjct 2306 AAGCTGAGTT-A-AGA----A-CG-GAA-ACACACAAAGCTATTCTTGTTCACACAGTGA 2356
Query 532 TGCATTCTCTTCCGGTAACTGAACATTCCACTTTGCAGAAGCCTACATCTTCCCAGTCAC 591
||| ||||||||| ||| ||||||||| || | ||| ||||||| || |||| || ||||
Sbjct 2357 TGCCTTCTCTTCCTGTACCTGAACATTACAGTCTGCGGAAGCCTGCAACTTCTCAATCAC 2416
Query 592 AAGTTGAGTTAAGAGAGTCTATTGCG-GATACTCATGGAA-CTACTCCTCTTCAAACAGA 649
||| |||||| | || |||| | || || || || |||||| | |||| ||||
Sbjct 2417 AAGCTGAGTT---A-AG---ATTG-GAGACACGCA---AAGCTACTCTTTTTCACACAGC 2465
Query 650 GATTTCTTCTCTTCCAT-TACCTCAACACT-TCGTTTTGCAGAAGCCCGCAACTTCTCAA 707
||| |||||||||| | ||||| |||| | | | | | |||||||| |||||||||||
Sbjct 2466 GATGCCTTCTCTTCC-TGTACCTGAACATTATAG-TATACAGAAGCCTTCAACTTCTCAA 2523
Query 708 TCACAAGC-G-G---ATA-C----ACACG-AAA-CTACTCTTCTTCACACAATACTGCCT 755
|||||||| | | | | | || || ||| |||||||| |||||||| | |||||
Sbjct 2524 TCACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCT 2583
Query 756 TCTCTTCCTGTACCTGAACTA-TGTACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGC 814
|| ||||||||| |||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 2584 TCCCTTCCTGTAACTGAAC-ATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGC 2642
Query 815 TGAGTTAAGAG 825
|||| | ||||
Sbjct 2643 TGAGCTGAGAG 2653
> Ahg478533 jgi|Araly1|478533|fgenesh2_kg.3__1234__AT3G11890.1
Length=1471
Score = 808 bits (437), Expect = 0.0
Identities = 492/519 (95%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 1155 GAAACTAGTCGTGTTCAAACTGTGGAACCTGAGGCCTGTCCTGATTTCACCTCAGTAGAC 1214
||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 954 GAAGCTAGTCGTGTTCACACTGTGGAACCTGAGGCTTATCCTGATTTCACCTCAGTAGAC 1013
Query 1215 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1073
Query 1275 TCACTGCAAGAAAGTAGGAA-GAATCAGGATAGAAGAGTGGAGATCCACAGGAGGCGTGC 1333
||||| ||||| |||| || |||||||||||||||||||||| | |||||||| |||||
Sbjct 1074 TCACTTCAAGATTGTAG-AATGAATCAGGATAGAAGAGTGGAGGTTCACAGGAGACGTGC 1132
Query 1334 GGGTCACAAGCCCATAAGGTTTCCAAGAGTGATGTGTAGCTCTGTTGTTATGGATAATGA 1393
|||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 1133 GGGTCACAAGCCCATAAGGTTTCCTAGAGTGATGTGCAGCTCTGTAGTTATTGATAATGA 1192
Query 1394 GAAGCTGAGAGTGTTGAATCTGGAGAAGAAGGTTGAGAAAGCGGGAGGGTTGAACGAATG 1453
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 1193 GAAGCTGAGAGTGTTGAATCTAGAGAAGAAGGTTGAGAAAGCGGGTGGGTTGCACGAATG 1252
Query 1454 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAGGATGAG 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1253 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAAGATGAG 1312
Query 1514 TAAGTTTCAGATGGCGAATTTGACAATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1573
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1313 TAAGTTTCAGATGGCGAATTTGACCATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1372
Query 1574 TGGGCCAAGAAGAAAGCTTATACATGCAATAGGTTGTGTCTATCACCCACATTGTCTACG 1633
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1373 TGGGCCAAGAAGAAAGCTTATACATGCAATTGGTTGTGTCTATCACCCACATTGTCTACG 1432
Query 1634 TGCTTCCTTTAACTGAGAACTATCTGTTAGAGTTTAGTT 1672
| |||||||||||||| |||||||| | | |||||||||
Sbjct 1433 TACTTCCTTTAACTGACAACTATCTATGAAAGTTTAGTT 1471
Score = 429 bits (232), Expect = 3e-119
Identities = 292/320 (91%), Gaps = 8/320 (3%)
Strand=Plus/Plus
Query 21 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAAC---T--CAAAGGTTACAATGGCGAAGC 75
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAACTTGTGATAAAGGTTATAATGGCGAAGC 60
Query 76 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTGGGTTTTGATGGAG 135
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTAGGTTTTGATGGAG 120
Query 136 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAAAATCTTCATTGTCTTGCCTTCTCTTC 195
||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 121 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCATTGTTTTGCCTTCTCTTC 180
Query 196 CACTTCCTCAACAACAGCATTTCACTTTGGAGAAACCTGCAATATCTCCTCAATTAGAAG 255
|||| ||| ||||||| | | |||| ||||||||||||||||| || ||||||||||||
Sbjct 181 CACTACCTGAACAACATC-T--CACTATGGAGAAACCTGCAATAACTTCTCAATTAGAAG 237
Query 256 CTGGGTTTAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTTTGTTCACACTGTGGTGC 315
||| ||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |
Sbjct 238 CTGAGTTAAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTTTCTTCACACTGTGGTAC 297
Query 316 CTTCTCTTCCTCTGCCTGAA 335
|| |||||||||||||||||
Sbjct 298 CTGCTCTTCCTCTGCCTGAA 317
Score = 235 bits (127), Expect = 8e-61
Identities = 164/182 (90%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 976 CGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAAT 1035
|||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804
Query 1036 CACAAGCTGAGGTAAGAAC-GTTGACACACAAAGCTACCCATGTTCACACAGCGATGCCT 1094
||||||||||| ||||| | | | || | ||||||||| | ||||||||||| | |||||
Sbjct 805 CACAAGCTGAGTTAAGAGCGGAT-ACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCT 863
Query 1095 TCCCTTTCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCGCAAGCT 1154
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923
Query 1155 GA 1156
||
Sbjct 924 GA 925
Score = 233 bits (126), Expect = 3e-60
Identities = 166/185 (90%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 862 CGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAAT 921
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804
Query 922 CACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATAC 981
|||||||||||||||||||| | |||||||||||||||||||||||| ||| | | | |
Sbjct 805 CACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGC 861
Query 982 CTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAATCACAAG 1041
|||| ||||||||| ||||||||| || | | | |||||| ||||||||||||||||||
Sbjct 862 CTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAG 921
Query 1042 CTGAG 1046
|||||
Sbjct 922 CTGAG 926
Score = 224 bits (121), Expect = 2e-57
Identities = 168/190 (88%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 751 TGCCTTCTCTTCCTGTACCTGAACTA-TGTACTTTGCAGAAGCCTGCAACTTCTCAATCA 809
|||||||||||||||||||||||| | | || | | ||||||||| ||||||||||||||
Sbjct 748 TGCCTTCTCTTCCTGTACCTGAAC-ATTATAGTATACAGAAGCCTTCAACTTCTCAATCA 806
Query 810 CAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATGCCT 869
|||||||||||||||||| |||||||||||||||||||||||||| ||| | | |||||
Sbjct 807 CAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGCCT 863
Query 870 TCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAATCACAAGCT 929
|| ||||||||| ||||||||| || | | ||||||||| ||||||||||||||||||||
Sbjct 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923
Query 930 GAGTTAAGAG 939
||| | ||||
Sbjct 924 GAGCTGAGAG 933
Score = 128 bits (69), Expect = 1e-28
Identities = 148/183 (81%), Gaps = 17/183 (9%)
Strand=Plus/Plus
Query 782 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGC 841
||||||||||||||||||||||||||||||||| || | | | | | || ||| |
Sbjct 476 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCGGA-T-ACG--C-A---CG---AAA-C 523
Query 842 TACTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACA 901
||||||| |||| | | ||| ||| ||||||| ||||||||||| ||||||||||| ||
Sbjct 524 TACTCTTCTTCA-G-A-CAGTGATACCTTCTCCCCCTGTACCTGACCATTACAGTCTGCA 580
Query 902 GAAGCCTTCAACTTCTCA-ATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTC 960
||||||| || ||||| | ||||||| ||||||||||| | ||| ||||||||||||
Sbjct 581 GAAGCCTGCAGCTTCT-ATATCACAATCTGAGTTAAGAATGGAGATAAGCAAAGCTACTC 639
Query 961 TTG 963
|||
Sbjct 640 TTG 642
Score = 128 bits (69), Expect = 1e-28
Identities = 150/186 (81%), Gaps = 18/186 (10%)
Strand=Plus/Plus
Query 655 CTTCTCTTCCAT-TACCTCAACACT-TCGTTTTGCAGAAGCCCGCAACTTCTCAATCACA 712
|||||||||| | ||||| |||| | | | | | |||||||| ||||||||||||||||
Sbjct 751 CTTCTCTTCC-TGTACCTGAACATTATAG-TATACAGAAGCCTTCAACTTCTCAATCACA 808
Query 713 AGC-G-G---ATA-C----ACACG-AAA-CTACTCTTCTTCACACAATACTGCCTTCTCT 760
||| | | | | | || || ||| |||||||| |||||||| | ||||||| ||
Sbjct 809 AGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCTTCCCT 868
Query 761 TCCTGTACCTGAACTA-TGTACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGT 819
||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 869 TCCTGTAACTGAAC-ATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGC 927
Query 820 TAAGAG 825
| ||||
Sbjct 928 TGAGAG 933
Score = 124 bits (67), Expect = 2e-27
Identities = 94/106 (89%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 790 AGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AATACGCGCAAAGCTACTCTT 848
||||| |||||||| |||||||||||||||||||| || || || | |||||||| ||||
Sbjct 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701
Query 849 GTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACA 894
|||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744
Score = 119 bits (64), Expect = 8e-26
Identities = 93/106 (88%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 904 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AAGACGCGCAAAGCTACTCTT 962
||||| |||||||| |||||||||||||||||||| || || || | |||||||| ||||
Sbjct 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701
Query 963 GTTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACA 1008
|||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5