BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G11900.1

Length=1645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928910 jgi|Araly1|928910|scaffold_301367.1                       2145    0.0  


> Ahg928910 jgi|Araly1|928910|scaffold_301367.1
Length=1340

 Score = 2145 bits (1161),  Expect = 0.0
 Identities = 1269/1323 (96%), Gaps = 0/1323 (0%)
 Strand=Plus/Plus

Query  68    GGCGATGGCGATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTAATAAA  127
             ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  18    GGCGATGGCAATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTGATAAA  77

Query  128   ATCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAAACGCTCGGTAA  187
             | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  78    ACCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAGACGCTTGGTAA  137

Query  188   CATTATCGTCTCCATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCATCGC  247
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  138   CATTATCGTCTCAATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCGTCGC  197

Query  248   CGGTTGGTTAGCCGGATCTCTCGGTGTCATTATCGTCGGATTCGCCACCTATTACTGCAT  307
             ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  198   CGGTTGGTTCGCCGGATCTCTCGGCGTCATTATCGTCGGATTCGCCACCTATTACTGCAT  257

Query  308   GCTCCTCCTCATTCAGTGCAGAGATAAGCTAGAATCGGAAGAAGGAGAAGAAGAATCGAA  367
             ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct  258   GCTCCTCCTCATTCAATGTAGAGATAAGCTAGAATCGGAACAAGGAGAAGAAGAATCGAA  317

Query  368   AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT  427
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318   AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT  377

Query  428   CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCGTATTTAGTGTTCATAGGTCGAAA  487
             |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct  378   CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCTTATCTAGTGTTCATAGGACGAAA  437

Query  488   CTTGTCATCCATATTTAGTTCGTATGGGTTAAGTATGGTTTCTTTCATATTGATTCTGGT  547
             ||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct  438   CTTGTCATCCATATTTAGTTCATATGGGTTAAGTATGGTGTCTTTCATCTTGATTCTGGT  497

Query  548   TCCAATCGAAGTTGGATTGTCGTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT  607
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  498   TCCAATCGAAGTTGGATTGTCTTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT  557

Query  608   CTTTGCTGATATATGCAACATCATAGCAATGTGTTTTGTTGTCAAAGAAAATGTGGAAAT  667
             ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  558   CTTTGCTGATATATGCAACATTATAGCAATGTGTTTCGTTGTCAAAGAAAATGTGGAAAT  617

Query  668   GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACTGCTATTTCGTCTACCATTGGTGG  727
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  618   GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACCGCTATTTCGTCTACCATTGGTGG  677

Query  728   TTTACCTTTTGCTGGAGGAGTTGCGGTGTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC  787
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  678   TTTACCTTTTGCTGGAGGAGTTGCGGTCTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC  737

Query  788   TTTGGAGAGTTCTATGAGGGAAAGAGAAGCTTTCCCTAAATTGTTAGCTAAAGTGCTTGC  847
             ||| || | ||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  738   TTTAGAAAATTCAATGAGGGAGAGAGAAGCTTTCCCTAAGTTGTTAGCTAAAGTGCTTGC  797

Query  848   CGGGATTACGTTTGTCTATGTGTTGTTCGGGTTTTGTGGTTATATGGCTTATGGTGATCA  907
              |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  798   GGGGATTACGTTTGTCTATGTGTTGTTTGGGTTTTGTGGTTATATGGCTTATGGCGATCA  857

Query  908   AACAAAGGATATCATCACTCTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTTCAGAT  967
             |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  858   AACAAAGGATATCATCACACTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTGCAGAT  917

Query  968   TGGGTTATGTGTGGGATTGACGTTTACATTTCCGATCATGGTACATCCGCTTAACGAGAT  1027
             |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct  918   TGGGTTATGTGTGGGATTGACGTTTACATTCCCGATTATGGTACATCCGCTTAATGAGAT  977

Query  1028  CATAGAGCAGAAACTGAAGAGGATAGACTGGCTTCAAAAGCATCATAATGGGTACAGCAA  1087
             |||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct  978   CATAGAGCAGAAACTGAAGAAGATAGATTGGCTTCAAAAGCATCATCATGGGTACAGCAA  1037

Query  1088  CGAAACAGGTTCAGTCTCAAAATTTGCAATCTTTACAACGAGGACACTTTTGGTGGTAGG  1147
             ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct  1038  CGAAACAGGTTCAGTCTCAAAATGTGCAATCTTTATAACGAGGACGCTTTTGGTGGTAGG  1097

Query  1148  ACTTGCAGCAATCGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG  1207
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1098  ACTTGCAGCAATTGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG  1157

Query  1208  TACTTTGTGCGCACTCATCTCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG  1267
             ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1158  TACTTTGTGTGCACTCATATCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG  1217

Query  1268  TCCATCACTAAATGTATGGAACAAATCCATCGACGTATTCATTGTGATTTGCGGGTTGAT  1327
             |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
Sbjct  1218  TCCATCACTAAATGTATGGAACAAATCCGTCGATGTATTCATCGTGATTTGCGGGTTGCT  1277

Query  1328  CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAAGGGATAGCATGTGA  1387
             |||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct  1278  CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAATGGAAACCAAGTGA  1337

Query  1388  TCT  1390
             |||
Sbjct  1338  TCT  1340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61668106655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5