BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11900.1 Length=1645 Score E Sequences producing significant alignments: (Bits) Value Ahg928910 jgi|Araly1|928910|scaffold_301367.1 2145 0.0 > Ahg928910 jgi|Araly1|928910|scaffold_301367.1 Length=1340 Score = 2145 bits (1161), Expect = 0.0 Identities = 1269/1323 (96%), Gaps = 0/1323 (0%) Strand=Plus/Plus Query 68 GGCGATGGCGATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTAATAAA 127 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 18 GGCGATGGCAATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTGATAAA 77 Query 128 ATCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAAACGCTCGGTAA 187 | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 78 ACCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAGACGCTTGGTAA 137 Query 188 CATTATCGTCTCCATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCATCGC 247 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 138 CATTATCGTCTCAATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCGTCGC 197 Query 248 CGGTTGGTTAGCCGGATCTCTCGGTGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 307 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 198 CGGTTGGTTCGCCGGATCTCTCGGCGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 257 Query 308 GCTCCTCCTCATTCAGTGCAGAGATAAGCTAGAATCGGAAGAAGGAGAAGAAGAATCGAA 367 ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct 258 GCTCCTCCTCATTCAATGTAGAGATAAGCTAGAATCGGAACAAGGAGAAGAAGAATCGAA 317 Query 368 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 377 Query 428 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCGTATTTAGTGTTCATAGGTCGAAA 487 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| Sbjct 378 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCTTATCTAGTGTTCATAGGACGAAA 437 Query 488 CTTGTCATCCATATTTAGTTCGTATGGGTTAAGTATGGTTTCTTTCATATTGATTCTGGT 547 ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 438 CTTGTCATCCATATTTAGTTCATATGGGTTAAGTATGGTGTCTTTCATCTTGATTCTGGT 497 Query 548 TCCAATCGAAGTTGGATTGTCGTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 607 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 498 TCCAATCGAAGTTGGATTGTCTTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 557 Query 608 CTTTGCTGATATATGCAACATCATAGCAATGTGTTTTGTTGTCAAAGAAAATGTGGAAAT 667 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 558 CTTTGCTGATATATGCAACATTATAGCAATGTGTTTCGTTGTCAAAGAAAATGTGGAAAT 617 Query 668 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACTGCTATTTCGTCTACCATTGGTGG 727 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 618 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACCGCTATTTCGTCTACCATTGGTGG 677 Query 728 TTTACCTTTTGCTGGAGGAGTTGCGGTGTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 787 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 678 TTTACCTTTTGCTGGAGGAGTTGCGGTCTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 737 Query 788 TTTGGAGAGTTCTATGAGGGAAAGAGAAGCTTTCCCTAAATTGTTAGCTAAAGTGCTTGC 847 ||| || | ||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 738 TTTAGAAAATTCAATGAGGGAGAGAGAAGCTTTCCCTAAGTTGTTAGCTAAAGTGCTTGC 797 Query 848 CGGGATTACGTTTGTCTATGTGTTGTTCGGGTTTTGTGGTTATATGGCTTATGGTGATCA 907 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 798 GGGGATTACGTTTGTCTATGTGTTGTTTGGGTTTTGTGGTTATATGGCTTATGGCGATCA 857 Query 908 AACAAAGGATATCATCACTCTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTTCAGAT 967 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 858 AACAAAGGATATCATCACACTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTGCAGAT 917 Query 968 TGGGTTATGTGTGGGATTGACGTTTACATTTCCGATCATGGTACATCCGCTTAACGAGAT 1027 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 918 TGGGTTATGTGTGGGATTGACGTTTACATTCCCGATTATGGTACATCCGCTTAATGAGAT 977 Query 1028 CATAGAGCAGAAACTGAAGAGGATAGACTGGCTTCAAAAGCATCATAATGGGTACAGCAA 1087 |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| Sbjct 978 CATAGAGCAGAAACTGAAGAAGATAGATTGGCTTCAAAAGCATCATCATGGGTACAGCAA 1037 Query 1088 CGAAACAGGTTCAGTCTCAAAATTTGCAATCTTTACAACGAGGACACTTTTGGTGGTAGG 1147 ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| Sbjct 1038 CGAAACAGGTTCAGTCTCAAAATGTGCAATCTTTATAACGAGGACGCTTTTGGTGGTAGG 1097 Query 1148 ACTTGCAGCAATCGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1207 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 ACTTGCAGCAATTGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1157 Query 1208 TACTTTGTGCGCACTCATCTCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1267 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TACTTTGTGTGCACTCATATCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1217 Query 1268 TCCATCACTAAATGTATGGAACAAATCCATCGACGTATTCATTGTGATTTGCGGGTTGAT 1327 |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| | Sbjct 1218 TCCATCACTAAATGTATGGAACAAATCCGTCGATGTATTCATCGTGATTTGCGGGTTGCT 1277 Query 1328 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAAGGGATAGCATGTGA 1387 |||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| Sbjct 1278 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAATGGAAACCAAGTGA 1337 Query 1388 TCT 1390 ||| Sbjct 1338 TCT 1340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61668106655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5