BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11930.3
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478539 jgi|Araly1|478539|fgenesh2_kg.3__1240__AT3G11930.2 848 0.0
> Ahg478539 jgi|Araly1|478539|fgenesh2_kg.3__1240__AT3G11930.2
Length=973
Score = 848 bits (459), Expect = 0.0
Identities = 591/649 (91%), Gaps = 31/649 (5%)
Strand=Plus/Plus
Query 1 ATGCATATCTTATTGCACGTGGCCGGTGCCCTTTGAGACGTATCACCCTCTACATGCAAT 60
||| ||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||
Sbjct 1 ATGTATATCTTATTGCACGTGTCCGGTGCACTTTGAGACGGATCATCCTCTACATGCAAT 60
Query 61 ATAAAAAGCATTGCAAATGAACCAAAGTTTGATCACATCCATCACTTATAACTAAAAACA 120
||||||||||||| ||||||| ||||||||| ||||| |||||| | |
Sbjct 61 ATAAAAAGCATTGGAAATGAAACAAAGTTTG---------ATCAC--ATAACT----A-A 104
Query 121 CAAATCAAGATAAAATGGCGGAAGAGCAAGCAGCGACGGCAATGGAAACATCGGCGGTGG 180
||| | |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 105 -AAA-C-------AATGGCGGAAGATCAAGCAACGACGGCAATGGAAACATCGGCGGTGG 155
Query 181 AGAAGCAGCCAGAGACGACGACAGAGGCTGAAGCACCAAGTTTGACGACGAAGAGGATGG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 156 AGAAGCAGCCAGAGACGACGACAGAGGCTGAACCACCAAGTTTGACGACGAAGAGGATGG 215
Query 241 TGGTTGCGATTGATGAGAGCGACTCGAGCTTCTACGCTCTCCAATGGGTCATTGACCATT 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TGGTTGCGATCGATGAGAGCGACTCGAGCTTCTACGCTCTCCAATGGGTCATTGACCATT 275
Query 301 TCTCTAATCTTTTATTGACCACAGC-GGCAGCTGAGGCGGAAAGTGGAATGCTCACGGTG 359
||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 276 TCTCTAACCTTTTATTGACCACT-CAGGCAGCCGAGGCGGAAAGTGGAATGCTCACGGTG 334
Query 360 ATTCATGTGCAGTCCCCTTTCAATCACTTTGCTGCCTTTCCGGCTGGACCGGGCGGCGCC 419
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 335 GTTCATGTGCAGTCCCCTTTCCATCACTTTGCTGCCTTTCCGGCTGGACCTGGCGGCGCC 394
Query 420 ACAGCAGTGTACGCATCTTC-ATCAATGATAGAGTCAGTGAA-AAAGGCACAACAAGAGA 477
|||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||
Sbjct 395 ACAGCAGTGTACGCATCTTCGA-CAATGATAGAGTCAGTGAAGAAAG-CACAACAAGAGA 452
Query 478 CCTCTGCTGCCCTTCTCTCTCGCGCTCTCCAAATGTGCCGAGCCAAGCAGATACGTACTG 537
|||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 453 CCTCTGCTGCGCTTCTCTCTCGTGCTCTCCAAATGTGCAGAGCCAAACAGATACGTACTG 512
Query 538 AAACTCTAGTGCTAGAAGGCGAGGCGAAGGAGATGATTTGTGAGGCGGTGGAGAAAATGC 597
|||||||||| || |||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct 513 AAACTCTAGTCCTTGAAGGCGACGCGAAGGAGATGATTTGCGAGGCGGTGGAGCAAATGC 572
Query 598 ACGTTGATCTTCTCGTTGTGGGTAGTCGTGGCCTTGGCAAGATCAAAAG 646
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 573 ACGTTGATCTTCTCGTTGTCGGTAGTCGTGGCCTTGGCAAGATCAAAAG 621
Score = 307 bits (166), Expect = 1e-82
Identities = 287/338 (85%), Gaps = 37/338 (11%)
Strand=Plus/Plus
Query 722 AAGAGCGTTTCTTGGGAGCGTTAGCGATTACTGCGCTCATCACGCCAACTGCCCCATCCT 781
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 619 AAGAGCGTTTCTTGGGAGCGTCAGCGATTACTGCGCTCATCACGCCCACTGCCCCATCCT 678
Query 782 TATTGTCAAGCCACCTAAGGAGATGACTAAGTAATATGGAGCTGTTTACATGTTTGGGTT 841
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 679 TATTGTCAAGCCACCTAAGGAGATGACTAAGTAATATGGATCTGGTTACATGTTTGGGTT 738
Query 842 ATTAGTACGAATTTTATAATGAGTGTGCCATAATTTACCTaaaaaagaaaaaaaagaaaa 901
|||| | || || | | | || | ||||||| |||||||| ||||
Sbjct 739 ATTAAT--GA----------GA-T-T----T--TT-A--TAAAAAA-AAAAAAAA-AAAA 773
Query 902 aaaGAGTGTTGTATGTACGT--GTGTTT-GACTTGGATAATTAGTGACATTTTAAGCAAA 958
|||||||||| |||||| |||||| |||||||||||||||| |||| |||||||||
Sbjct 774 ---GAGTGTTGTACGTACGTATGTGTTTTGACTTGGATAATTAGTTACATATTAAGCAAA 830
Query 959 -TGTGTATTTGGAAAAGTGATGT--CAATGAAATATGAATATGGGTCGAATAAAGAAGCG 1015
| ||||||||||||||| |||| |||| |||||||||||| |||||||||| ||||||
Sbjct 831 AT-TGTATTTGGAAAAGTAATGTGTCAATCAAATATGAATATAGGTCGAATAATGAAGCG 889
Query 1016 AAGATCT-GTAGACTGTTGCTTCTCTGCATCTGTTGTT 1052
|||| || |||| |||||||||||||||| ||||||||
Sbjct 890 AAGA-CTTGTAGTCTGTTGCTTCTCTGCACCTGTTGTT 926
Score = 62.1 bits (33), Expect = 9e-09
Identities = 44/49 (90%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 1066 TATTGTTGTATGTTTATAATTTATTAAAAGCAAATTGTCTT-CCTAATT 1113
|||||||||||||||||||||||||||||||| || |||| || ||||
Sbjct 926 TATTGTTGTATGTTTATAATTTATTAAAAGCATCTTTTCTTTCC-AATT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5