BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11945.2 Length=1458 Score E Sequences producing significant alignments: (Bits) Value Ahg928915 jgi|Araly1|928915|scaffold_301372.1 1555 0.0 > Ahg928915 jgi|Araly1|928915|scaffold_301372.1 Length=1199 Score = 1555 bits (842), Expect = 0.0 Identities = 916/951 (96%), Gaps = 7/951 (1%) Strand=Plus/Plus Query 314 GGTTGGTGCTGCTGAGTCTGA-TGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATG 372 |||||||||||||| | || |||||||||||||||||||||| ||||||||||||||| Sbjct 240 GGTTGGTGCTGCTG-G---GACTGATCCAGTGCTGGATAGAATTACCCGGTTCCAAAATG 295 Query 373 CTTGCTGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACTGCCT 432 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 296 CTTGCTGGAGATTTCTTAGGCCCCATACAATCCGTGGAACAGCTTTAGGATCCACCGCCT 355 Query 433 TGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGG 492 ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |||| Sbjct 356 TGGTGGCAAGAGCTTTGATAGAGAATACTCATCTGATCAAATGGAGTCTTGTACTCAAGG 415 Query 493 CACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGA 552 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 416 CACTTTCAGGTCTTCTTGCTCTTATATGTGGGAATGGTTATATAGTCGGCATCAATCAGA 475 Query 553 TCTACGACATTGGAATCGACAAAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATC 612 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 476 TCTACGACATTGGTATCGACAAAGTGAACAAACCATATTTGCCAATAGCAGCAGGAGATC 535 Query 613 TATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 672 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TATCAGTGCAATCTGCCTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 595 Query 673 TCGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 732 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 TTGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 655 Query 733 CCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTA 792 ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| Sbjct 656 CCATCTATTCTGTTCCACCGCTTAGAATGAAAAGATTCCCAATTGCAGCATTTCTTATTA 715 Query 793 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 775 Query 853 TTGGACTTCCATTTCAGTGGAGTGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGT 912 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 776 TTGGACTTCCATTTCAGTGGAGTGCCCCTGTGGCGTTCATCACATCTTTTGTGACACTGT 835 Query 913 TTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAAGTTCC 972 ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct 836 TTGCACTGGTCATTGCTATTACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTTCC 895 Query 973 AAATATCAACCCTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 1032 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AAATATCAACCTTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 955 Query 1033 TTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTTA 1092 |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 956 TTCTGCTAGTGAACTATGTTTCTGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTCA 1015 Query 1093 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAG-GCTTAATTTTCCAGACA 1151 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1016 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTC-GTGCTTAATTTTCCAGACA 1074 Query 1152 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATCGGTTTATA 1211 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1075 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATAGGTTTATA 1134 Query 1212 TGGAATCTCTTCTACGCAGAGTATCTGTTATTCCCCTTCCTCTAGCTTTCA 1262 |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1135 TGGAATCTCTTCTACGCAGAGTATCTGTTATTTCCCTTCCTCTAGCTTTCA 1185 Score = 320 bits (173), Expect = 2e-86 Identities = 181/185 (98%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 54 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCACAATCACCGCGTGTTCGGTTC 113 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCGCAATCACCGTGTGTTCGGTTC 60 Query 114 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTCCTTCTGTGCATTTA 173 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTTCTTCTGTGCATTTA 120 Query 174 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGA 233 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTAGCTTCACGAGCTTATCAACTTCAAGA 180 Query 234 ATGCG 238 ||||| Sbjct 181 ATGCG 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54545230840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5