BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12020.2
Length=3598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478554 jgi|Araly1|478554|fgenesh2_kg.3__1255__AT3G12020.1 3823 0.0
Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1 1327 0.0
Ahg904097 jgi|Araly1|904097|Al_scaffold_0003_1225 191 3e-47
> Ahg478554 jgi|Araly1|478554|fgenesh2_kg.3__1255__AT3G12020.1
Length=3012
Score = 3823 bits (2070), Expect = 0.0
Identities = 2164/2211 (98%), Gaps = 0/2211 (0%)
Strand=Plus/Plus
Query 292 ATGGCATCTAGACAAGGATCAAAATCGAGAAAAGCAGGGTTAAAGGGTGCTGATTCTACT 351
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCTAGACAAGGATCAAAGTCGAGAAAAGCAGGGTTAAAGGGTGCTGATTCTACT 60
Query 352 GCATCTTCGACAACCTCGTCTTCGAAGCTTTATCAAGAGACTTCTATAGATGGCCATAGC 411
|||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GCATCTTCTACTACCTCGTCTTCGAAGCTTTATCAAGAGACATCTATCGATGGCCATAGC 120
Query 412 TCCCCTGCTTCTTCATCTGCTCAAAGCAAGCAGCAGTTCTTCTCACCAGATCCCTTACCA 471
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 121 TCCCCTGCTTCTTCATCTGCTCAAAGCAAGCATCAGTTCTTCTCACCAGATTCCTTACCA 180
Query 472 CAAACTGCTCAGCGGTCTAAAGAAAACGTCACAGTGACAGTTCGCTTTCGCCCACTCAGT 531
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAGTGCTCAGCGGTCTAAAGAAAACGTCACAGTGACAGTTCGCTTTCGCCCACTCAGT 240
Query 532 CCAAGGGAAATTCGCCAAGGGGAGGAGGTTGCATGGTATGCAGATGGGGAAACTATCGTG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCAAGGGAAATTCGCCAAGGGGAGGAGGTTGCATGGTATGCAGATGGGGAAACAATCGTG 300
Query 592 CGAAATGAGCATAATCCGACAATAGCTTATGCCTATGACCGTGTCTTTGGACCTACAACC 651
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CGAAATGAGCATAATCCGACAATAGCTTATGCCTATGACCGAGTCTTTGGACCTACAACC 360
Query 652 ACAACACGCAATGTCTATGATATTGCTGCACACCATGTTGTTAATGGGGCTATGGAGGGG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAACACGCAATGTCTATGATATTGCTGCACACCATGTTGTTAATGGGGCTATGGAGGGG 420
Query 712 ATAAATGGGACCATTTTCGCATATGGAGTGACAAGCAGTGGAAAGACACACACAATGCAT 771
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAAATGGGACGATTTTTGCATATGGAGTGACAAGCAGTGGAAAGACACACACAATGCAT 480
Query 772 GGTGACCAGAGATCTCCTGGTATTATACCGTTAGCAGTGAAAGATGCTTTCAGCATCATC 831
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 481 GGTGACCAGAGATCTCCTGGTATTATACCACTAGCAGTGAAAGATGCTTTCAGCATCACC 540
Query 832 CAAGAGACTCCTAATCGAGAATTTCTTCTGCGTATTTCCTACATGGAAATATATAATGAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAAGAGACTCCTAATCGAGAATTTCTTCTGCGTATTTCCTACATGGAAATATATAATGAG 600
Query 892 GTTGTCAATGATTTGTTGAATCCAGCAGGACACAATTTGAGGATCAGAGAAGACAAGCAG 951
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GTTGTCAATGATTTGTTGAATCCAGCAGGACAAAATTTGAGGATCAGAGAAGACAAGCAG 660
Query 952 GGAACCTTTGTCGAAGGGATTAAAGAAGAAGTTGTTTTATCCCCTGCTCATGCGCTTTCT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAACCTTTGTCGAAGGGATTAAAGAAGAAGTTGTTTTATCCCCTGCTCATGCGCTTTCT 720
Query 1012 CTTATTGCAGCTGGAGAAGAGCAACGACATGTTGGATCCACAAATTTTAATTTGCTCAGC 1071
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CTTATCGCAGCTGGAGAAGAGCAACGACATGTTGGATCTACAAATTTTAATTTGCTCAGC 780
Query 1072 AGCCGGAGCCATACAATATTTACGTTGACGATAGAAAGTAGTCCCTTAGGTGACAAGAGT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 AGCCGGAGCCATACAATATTTACGTTGACGATAGAAAGTAGTCCCTTAGGCGACAAGAGT 840
Query 1132 AAAGGTGAAGCTGTACACCTCTCACAACTGAACCTCGTTGATCTGGCAGGTTCCGAGAGT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAGGTGAAGCTGTACACCTCTCACAACTGAACCTCGTTGATCTGGCAGGTTCCGAGAGT 900
Query 1192 TCAAAGGTTGAAACCAGTGGTGTAAGACGCAAAGAAGGATCATATATAAATAAAAGTTTG 1251
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCAAAGGTTGAAACTAGTGGTGTAAGACGCAAAGAAGGATCATATATAAATAAAAGTTTG 960
Query 1252 CTGACGTTAGGGACTGTGATATCAAAGCTTACGGATGTGAGGGCTTCACATGTACCATAC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGACGTTAGGGACTGTGATATCAAAGCTTACGGATGTGAGGGCTTCACATGTACCATAC 1020
Query 1312 AGAGACTCTAAGTTAACCAGGATCCTTCAGTCCTCATTGAGTGGTCATGACCGAGTATCT 1371
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 AGAGACTCTAAGTTAACAAGGATCCTTCAATCCTCATTGAGTGGTCATGACCGAGTATCT 1080
Query 1372 CTCATTTGTACCGTCACTCCTGCATCAAGCAGTTCGGAAGAAACACACAATACACTGAAA 1431
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 1081 CTCATTTGTACAGTCACTCCTGCATCAAGCAGTTCAGAAGAAACACACAACACATTGAAA 1140
Query 1432 TTTGCTCATCGTGCAAAGCATATTGAGATTCAAGCTGAACAAAACAAGATAATTGATGAG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTGCTCATCGTGCAAAGCATATTGAGATTCAAGCTGAACAAAACAAGATAATTGATGAG 1200
Query 1492 AAATCATTAATCAAGAAGTACCAACGCGAGATTCGTCAACTGAAGGAAGAGTTGGAACAG 1551
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 AAATCATTAATCAAGAAGTACCAACATGAGATTCGTCAACTGAAGGAAGAGTTGGAACAC 1260
Query 1552 CTTAAACAGGAAATTGTACCAGTTCCTCAGCTGAAGGATATTGGTGCAGATGATATTGTT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTTAAACAGGAAATTGTACCAGTTCCTCAGCTGAAGGATATTGGTGCAGATGATATTGTT 1320
Query 1612 CTTCTGAAGCAGAAGCTAGAAGATGGTCAAGTCAAGCTGCAATCTAGACTCGAAGAAGAG 1671
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1321 CTCCTGAAGCAGAAGCTAGAAGATGGTCAAGTCAAGCTGCAATCCAGACTCGAAGAGGAG 1380
Query 1672 GAAGAAGCTAAAGCAGCTCTCCTGAGTCGAATCCAAAGATTGACGAAATTAATTTTGGTG 1731
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1381 GAAGAAGCTAAAGCAGCTCTCTTGAGTCGAATCCAACGATTGACGAAATTAATTTTGGTG 1440
Query 1732 TCGACTAAAAATCCACAAGCATCTCGATTACCTCATCGTTTTAATCCGCGGAGGAGACAT 1791
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1441 TCGACTAAAAATCCCCAAGCATCTCGATTACCTCATCGTTTTAATCCTCGGAGGAGACAT 1500
Query 1792 TCATTTGGGGAAGAAGAGCTTGCTTACCTACCATACAAGAGGCGGGACATGATGGACGAT 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TCATTTGGGGAAGAAGAGCTTGCTTACCTACCATACAAGAGGCGGGACATGATGGACGAT 1560
Query 1852 GAGCAACTTGACCTGTATGTTTCTGTGGAGGGAAATCATGAGATTAGAGATAATGCGTAT 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GAGCAACTTGACCTGTATGTTTCTGTGGAGGGAAATCATGAGATTAGAGATAATGCGTAT 1620
Query 1912 AGAGAAGaaaaaaaGACCCGCAAGCACGGATTGTTAAATTGGTTAAAGCCTAAGAAAAGA 1971
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AGAGAAGAAAAAAAGACCCGGAAGCACGGATTGTTAAATTGGTTAAAGCCTAAGAAAAGA 1680
Query 1972 GATCACAGTTCAAGTGCCAGCGACCAGTCAAGTGTGGTCAAATCTAACAGCACACCATCA 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GATCACAGTTCAAGTGCCAGCGACCAGTCAAGTGTGGTCAAATCTAACAGCACACCATCA 1740
Query 2032 ACTCCTCAAGGGGGAGGCAGTCATCTGCACACAGAATCAAGACTTTCAGAAGGCTCGCCT 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ACTCCTCAAGGGGGAGGCAGTCATCTGCACACAGAATCAAGACTTTCAGAAGGCTCGCCT 1800
Query 2092 TTGATGGAACAACTCTCAGAGCCTAGGGAAGACAGAGAAGCTTTAGAAGACAGTTCCCAT 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTGATGGAACAACTCTCAGAGCCTAGGGAAGACAGAGAAGCTTTAGAAGACAGTTCCCAT 1860
Query 2152 GAAATGGAGATTCCGGAGACTAGCAATAAAATGAGCGATGAGTTGGATCTTTTGAGGGAA 2211
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1861 GAAATGGAGATTCCGGAGACTAGCAATAAAATGAGCGATGAGTTGGATCTCTTGAGGGAA 1920
Query 2212 CAGAAAAAGATATTATCTGAAGAGGCGGCACTGCAATTAAGTTCTTTAAAACGGATGTCA 2271
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1921 CAGAAAAAGATTTTATCTGAAGAGGCGGCACTGCAATTAAGTTCTTTAAAACGGTTGTCA 1980
Query 2272 GATGAAGCTGCAAAGTCCCCTCAAAATGAGGAGATTAATGAGGAAATTAAAGTACTCAAT 2331
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1981 GATGAAGCTACAAAGTCCCCTCAAAATGAGGAGATTAAAGGGGAAATTAAAGTACTCAAT 2040
Query 2332 GACGACATCAAAGCAAAGAATGACCAGATTGCTACGTTGGAGAGACAGATAATGGATTTT 2391
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 2041 GACGACATCAAAGCAAAGAATGACCAGATTGCTACGTTGGAGAAACAAATATTGGATTTT 2100
Query 2392 GTTATGACATCTCATGAGGCATTGGATAAATCTGATATCATGCAGGCAGTTGCTGAGCTG 2451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GTTATGACATCTCATGAGGCATTGGATAAATCTGATATCATGCAGGCAGTTGCTGAGCTG 2160
Query 2452 AGGGATCAACTTAATGAGAAATCTTTTGAACTCGAGGTGATCGAATTGTTT 2502
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 AGGGATCAACTTAATGAGAAATCTTTTGAACTCGAGGTGATCGAATTGTTT 2211
Score = 1201 bits (650), Expect = 0.0
Identities = 761/813 (94%), Gaps = 14/813 (2%)
Strand=Plus/Plus
Query 2615 TTT-CTTCTGTGTATATTATAAAATACCAGTATTCAAAACGCCAGACTATATTAACAATG 2673
||| ||||||||||||||||| ||||||||| |||||||||||| || || | || |
Sbjct 2213 TTTGCTTCTGTGTATATTATATAATACCAGTCTTCAAAACGCCAAAC--TA-T-AC--T- 2265
Query 2674 AAGCTAATGGTATGCTCTACGCTTTTTTCTCATTCTTCATCTTGTTTACAGGTTAAAGCT 2733
|| | ||| | | | |||||| |||||| |||||||||| ||||||||||||||||||
Sbjct 2266 AA-C-AAT-G-AAG--CTACGCGGTTTTCTTATTCTTCATCGTGTTTACAGGTTAAAGCT 2319
Query 2734 GCAGATAATCGCATCATTCAGCAAACACTCAATGAAAAGACATGTGAATGTGAAGTGTTG 2793
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2320 GCAGATAATCGCATCATTCAGGAAACACTCAATCAAAAGACATGTGAATGTGAAGTGTTG 2379
Query 2794 CAAGAAGAAGTTGCAAATCTAAAGCAGCAGCTCTCTGAGGCCCTGGAACTAGCACAGGGA 2853
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2380 CAAGAAGAAGTTGCAAATCTGAAGCAGCAGCTCTCCGATGCCCTGGAACTAGCACAGGGA 2439
Query 2854 ACTAAGATTAAAGAGCTGAAACAAGACGCCAAGGAACTAAGTGAATCAAAGGAGCAGTTA 2913
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 2440 ACTAAGATTGAAGAGCTGAAACAAAAAGCCAAGGAACTAAGTGAATCAAAGGAGCAATTA 2499
Query 2914 GAACTCAGAAACAGGAAACTTGCAGAAGAGAGTTCATATGCAAAAGGTCTTGCATCAGCA 2973
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2500 GAACTCAGAAACAGGAAACTCGCAGAAGAGAGTTCATATGCAAAAGGTCTTGCATCGGCA 2559
Query 2974 GCTGCAGTTGAGCTCAAGGCATTATCCGAAGAAGTTGCAAAGCTTATGAATCAGAACGAG 3033
|||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2560 GCTGCAGTTGAGCTTAAGGCATTATCCGAAGAAGTTGCAAAGCTTATGTATCAAAACGAG 2619
Query 3034 AGACTAGCAGCTGAGCTGGCAACACAGAAGAGCCCAATCGCACAACGAAATAAGACAGGA 3093
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2620 AGACTAGCAGCTGAGCTGGCAACACAAAAGAGCCCGGTCGCACAACGAAATAAGACAGGA 2679
Query 3094 ACAACAACAAATGTAAGGAACAATGGAAGAAGAGAGAGTCTTGCAAAGAGGCAAGAACAT 3153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2680 ACAACAACAAATGTAAGGAACAATGGAAGAAGAGAGAGTCTTGCAAAGAGGCAAGAACAT 2739
Query 3154 GACAGCCCATCAATGGAGCTGAAGAGAGAACTGAGGATGAGTAAGGAACGTGAGCTATCG 3213
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2740 GACAGCCCCTCAATGGAGCTGAAGAGAGAAGTGAGGTTGAGTAAGGAACGTGAGCTATCG 2799
Query 3214 TATGAAGCTGCACTTGGTGAAAAAGAACAAAGAGAAGCTGAGCTTGAAAGGATATTAGAA 3273
|||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2800 TATGAAGCTGCACTAGTTGAAAAAGATCAAAGAGAAGCTGAGCTTGAAAGGATATTAGAA 2859
Query 3274 GAAACAAAACAGAGAGAAGCATATCTGGAGAATGAGCTTGCTAATATGTGGGTTCTTGTT 3333
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2860 GAAACGAAACAGAGAGAAGCATATCTGGAGAATGAGCTAGCTAATATGTGGGTTCTTGTT 2919
Query 3334 TCTAAGCTGAGAAGATCTCAAGGAGCAGATTCAGAAATCTCTGATTCTATATCAGAGACG 3393
|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2920 TCTAAGTTGAGAAGATCTCAAGGAGCTGATTCTGAAATCTCTGATTCTATATCAGAGACA 2979
Query 3394 CGACAAACGGAACAAACGGAAGGTTCATTTTGA 3426
||||||||||||||||||||||| |||||||||
Sbjct 2980 CGACAAACGGAACAAACGGAAGGATCATTTTGA 3012
> Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1
Length=2970
Score = 1327 bits (718), Expect = 0.0
Identities = 1136/1335 (85%), Gaps = 39/1335 (3%)
Strand=Plus/Plus
Query 330 GTTAAAGGGTGCTGATTCTACTGCATCTTCGACAACCTCGTCTTCGAAGCTTTATCAAGA 389
||| |||| |||||| || ||| |||||| |||||||||||||| || ||||||| |||
Sbjct 48 GTTTAAGGATGCTGAGTCCCCTGTATCTTCAACAACCTCGTCTTCAAAACTTTATCCAGA 107
Query 390 GACTTCTATAGATGGCCATAGCTCCCCTGCTTCTTCATCTGCTCAAAGCAAGCAGCAGTT 449
||| ||| | ||| |||||||| ||||| | ||||||||||||| |||||||| || ||
Sbjct 108 GACATCTGTGGATAGCCATAGCCCCCCTACGTCTTCATCTGCTCGAAGCAAGCCTCATTT 167
Query 450 -C-TTCTCACCA-GATCCCTTA-CCAC-AAACTGCTCAGCGGTCTAAAGAAAACGTCACA 504
| | | | || || || || | || | || || ||| |||||||| |||||
Sbjct 168 ACAATAT-A-CAGGA-AAGGTACCCCCTAAGC--CTTTGCAGTCCAAAGAAAATGTCACT 222
Query 505 GTGACAGTTCGCTTTCGCCCACTCAGTCCAAGGGAAATTCGCCAAGGGGAGGAGGTTGCA 564
|| |||||||| ||||| ||||||||||| |||||||| ||| |||| |||||| |||||
Sbjct 223 GTCACAGTTCGTTTTCGTCCACTCAGTCCGAGGGAAATCCGCAAAGGAGAGGAGATTGCA 282
Query 565 TGGTATGCAGATGGGGAAACTATCGTGCGAAATGAGCATAATCCGACAATAGCTTATGCC 624
|||||||||||||| ||||| || ||||| ||||||||||||| | ||||||||||||||
Sbjct 283 TGGTATGCAGATGGAGAAACAATTGTGCGGAATGAGCATAATCAGTCAATAGCTTATGCC 342
Query 625 TATGACCGTGTCTTT-GGACCTACAACCACAACACGCAATGTCTATGATATTGCTGCACA 683
||||| ||||| ||| || ||||| || ||||||||| ||||||||||| ||||||| ||
Sbjct 343 TATGATCGTGT-TTTCGGGCCTACGACGACAACACGCCATGTCTATGATGTTGCTGCTCA 401
Query 684 CCATGTTGTTAATGGGGCTAT------GG---A-G-G-G-G---AT--AA--A-TGGGAC 722
||||| |||||||| ||||| || | | | | | || || | |||||
Sbjct 402 GCATGTAGTTAATGGTGCTATGGCGGGGGTCAACGTGAGTGTTAATCCAACCACAGGGAC 461
Query 723 CATTTTCGCATATGGAGTGACAAGCAGTGGAAAGACACACACAATGCATGGTGACCAGAG 782
|||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||| ||
Sbjct 462 CATTTTCGCATACGGAGTGACAAGCAGTGGAAAAACTCACACTATGCATGGGGACCAAAG 521
Query 783 ATCTCCTGGTATTATACCGTTAGCAGTGAAAGATGCTTTCAGCATCATCCAAGAGACTCC 842
|||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||
Sbjct 522 ATCTCCTGGTATAATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACC 581
Query 843 TAA-TCGAGAATTTCTTCTGCGTATTTCCTACATGGAAATATATAATGAGGTTGTCAATG 901
|| ||||||||||| || ||| |||| ||| | |||||||||||||||||||||||||
Sbjct 582 -AAGGCGAGAATTTCTCCTACGTGTTTCTTACTTTGAAATATATAATGAGGTTGTCAATG 640
Query 902 ATTTGTTGAATCCAGCAGGACACAATTTGAGGATCAGAGAAGACAAGCAGGGAACCTTTG 961
|||| ||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 641 ATTTATTGAACCCAGCAGGACAAAATTTGAGGACCAGAGAAGATGAGCAGGGAACCTTTA 700
Query 962 TCGAAGGGATTAAAGAAGAAGTTGTTTTATCCCCTGCTCATGCGCTTTCTCTTATTGCAG 1021
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 701 TCGAAGGGATTAAAGAAGAAGTTGTTCTATCCCCTGCTCATGCGCTTTCTCTTATAGCAG 760
Query 1022 CTGGAGAAGAGCAACGACATGTTGGATCCACAAATTTTAATTTGCTCAGCAGCCGGAGCC 1081
||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 761 CTGGAGAAGAGCACCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCC 820
Query 1082 ATACAATATTTACGTTGACGATAGAAAGTAGTCCCTTAGGTGACAAGAGTAAAGGTGAAG 1141
||||||| ||||| |||| ||||| ||||||||||| |||||||| | | |||||| ||
Sbjct 821 ATACAATGTTTACCCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAG 880
Query 1142 CTGTACACCTCTCACAACTGAACCTCGTTGATCTGGCAGGTTCCGAGAGTTCAAAGGTTG 1201
||||||||||||| || ||||||||| |||| ||||||||||| ||||| ||||||| ||
Sbjct 881 CTGTACACCTCTCGCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAGGCTG 940
Query 1202 AAACCAGTGGTGTAAGACGCAAAGAAGGATCATATATAAATAAAAGTTTGCTGACGTTAG 1261
||||||||||| |||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 941 AAACCAGTGGTTTAAGACGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTGACTTTAG 1000
Query 1262 GGACTGTGATATCAAAGCTTACGGATGTGAGGGCTTCACATGTACCATACAGAGACTCTA 1321
||||||| |||||||||||||| ||| || |||| ||||||||||| || |||||||
Sbjct 1001 GGACTGTAATATCAAAGCTTACAGATAAGAAGGCTAGTCATGTACCATATAGGGACTCTA 1060
Query 1322 AGTTAACCAGGATCCTTCAGTCCTCATTGAGTGGTCATG-ACCGAGTATCTCTCATTTGT 1380
| ||||||||| | |||||||||||||||||||| |||| || | |||||||| || |||
Sbjct 1061 AATTAACCAGGCTGCTTCAGTCCTCATTGAGTGGGCATGGAC-GTGTATCTCTTATATGT 1119
Query 1381 ACCGTCACTCCTGCATCAAGCAGTTCGGAAGAAACACACAATACACTGAAATTTGCTCAT 1440
|| || ||||||||||||||||| || |||||||||||||| ||| |||||||||| |||
Sbjct 1120 ACAGTGACTCCTGCATCAAGCAGCTCCGAAGAAACACACAACACATTGAAATTTGCCCAT 1179
Query 1441 CGTGCAAAGCATATTGAGATTCAAGCTGAACAAAACAAGATAATTGATGAGAAATCATTA 1500
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 1180 CGTGCAAAGCATATTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTG 1239
Query 1501 ATCAAGAAGTACCAACGCGAGATTCGTCAACTGAAGGAAGAGTTGGAACAGCTTAAACA- 1559
|| |||||||| ||| ||||||||| ||||| ||||| |||||||||||||||||| |
Sbjct 1240 ATTAAGAAGTATCAATACGAGATTCGCCAACTCAAGGAGGAGTTGGAACAGCTTAAAGAA 1299
Query 1560 GGAAATTGTACCAGTTCCTCAGCTGAAGGATATTGGTGCAGATGATATTGTTCTTCTGAA 1619
|||| || ||||||| ||||| | ||||||||| ||| ||||||| ||||||| |||||
Sbjct 1300 GGAA-TTAAACCAGTTTCTCAGTTAAAGGATATTAGTGAAGATGATGTTGTTCTCCTGAA 1358
Query 1620 GCAGAAGCTAGAAGA 1634
|||||| ||||||||
Sbjct 1359 GCAGAAACTAGAAGA 1373
> Ahg904097 jgi|Araly1|904097|Al_scaffold_0003_1225
Length=459
Score = 191 bits (103), Expect = 3e-47
Identities = 176/207 (85%), Gaps = 22/207 (11%)
Strand=Plus/Plus
Query 1966 AAAAGAGATCACAGTTCAAGTGCCAGCGACCAGTCAAGTGTGGTCAAATCTAACAGCACA 2025
||||||||||||||||||||||||||||||||||||| | |||||| | | | |
Sbjct 117 AAAAGAGATCACAGTTCAAGTGCCAGCGACCAGTCAA-ACT-GTCAAA-GT-A-TGGTC- 170
Query 2026 CCATCAACTCCTCAA----G---GGGGAGGCAGTCATCTGCACACAGAATCAAGACTTTC 2078
||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 171 GAATCAACTCCTCAAGGGGGACTGGGGAGGCAGTCATCTGCACACAGAATCAAGA-TTT- 228
Query 2079 AGAAGGCTCGCCTTTGATGGAACAACTCTCAGAGCCTAGGGAAGACAGAGAAGCTTTAGA 2138
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 229 -------TCGCCTTTGATGGAACAACTCTCAGAGCCTAGGAAAGACAGAGAAGCTTTAGA 281
Query 2139 AGACAGTTCCCATGAAATGGAGATTCC 2165
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Sbjct 282 AGACAGTTCCCATGAAATGGAGATTCC 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135903593183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5