BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12120.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478568 jgi|Araly1|478568|fgenesh2_kg.3__1269__AT3G12120.1 2590 0.0
> Ahg478568 jgi|Araly1|478568|fgenesh2_kg.3__1269__AT3G12120.1
Length=1566
Score = 2590 bits (1402), Expect = 0.0
Identities = 1501/1549 (97%), Gaps = 6/1549 (0%)
Strand=Plus/Plus
Query 16 CATCTGACCACCAGAAGAAGAGCCACACACTCACAAATT-AA-AAagagagagagag-ag 72
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||
Sbjct 1 CATCTGACCACCAGAAGAAGAGCCACACACTCACAAATTAAATAAAAAGAGAGAGAGAAG 60
Query 73 agagagacagagagagagagagaTTCTGCGGAGGAGCTTCTTCTTCGTAGGGTGTTCATC 132
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGA-AAAGAGAGAGAGAGAGATTCTGCGGAGGAGCTTCTTCTTCGTAGGGTGTTCATC 119
Query 133 GTTATTAACGTTATCGCCCCTACGTCAGCTCCATCTCCAGAAACATGGGTGCAGGTGGAA 192
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GTTATTAACGTTATC-TCCCTACGTCAGCTCAATCTCCAGAAACATGGGTGCAGGTGGAA 178
Query 193 GAATGCCGGTTCCTACTTCTTCCAAGAAATCGGAAACCGACACCACAAAGCGTGTGCCGT 252
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 GAATGCCGGTTCCTACTTCTTCCAAGAAATCGGAAACCGACACCATAAAGCGTGTGCCGT 238
Query 253 GCGAGAAACCGCCTTTCTCGGTGGGAGATCTGAAGAAAGCAATCCCGCCGCATTGTTTCA 312
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 GCGAGAAACCGCCTTTCTCGGTGGGAGATCTGAAGAAAGCAATCCCCCCGCATTGTTTCA 298
Query 313 AACGCTCAATCCCTCGCTCTTTCTCCTACCTTATCAGTGACATCATTATAGCCTCATGCT 372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 AACGCTCAATCCCTCGCTCTTTCTCCTACCTTATCAGTGACATCATTATTGCCTCATGCT 358
Query 373 TCTACTACGTCGCCACCAATTACTtctctctcctccctcagcctctctctTACTTGGCTT 432
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 TCTACTACGTTGCCACCAATTACTTCTCTCTCCTACCTCAGCCTCTCTCTTACTTGGCTT 418
Query 433 GGCCACTCTATTGGGCCTGTCAAGGCTGTGTCCTAACTGGTATCTGGGTCATAGCCCACG 492
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 GGCCACTCTATTGGGCATGTCAAGGCTGTGTCCTAACTGGTGTCTGGGTCATAGCCCACG 478
Query 493 AATGCGGTCACCACGCATTCAGCGACTACCAATGGCTGGATGACACAGTTGGTCTTATCT 552
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 AATGCGGTCACCACGCATTCAGTGACTACCAATGGCTGGATGACACAGTCGGTCTTATCT 538
Query 553 TCCATTCCTTCCTCCTCGTCCCTTACTTCTCCTGGAAGTATAGTCATCGCCGTCACCATT 612
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 TCCACTCCTTCCTCCTCGTCCCTTACTTTTCCTGGAAGTATAGTCATCGCCGTCACCATT 598
Query 613 CCAACACTGGATCCCTCGAAAGAGATGAAGTATTTGTCCCAAAGCAGAAATCAGCAATCA 672
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CCAACACGGGATCCCTCGAAAGAGATGAAGTATTTGTCCCAAAGCAGAAATCCGCAATCA 658
Query 673 AGTGGTACGGGAAATACCTCAACAACCCTCTTGGACGCATCATGATGTTAACCGTCCAGT 732
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTGGTACGGCAAATACCTCAACAACCCTCTTGGACGCATCATGATGTTAACCGTCCAGT 718
Query 733 TTGTCCTCGGGTGGCCCTTGTACTTAGCCTTTAACGTCTCTGGCAGACCGTATGACGGGT 792
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 719 TTGTCCTCGGGTGGCCCTTGTACTTAGCCTTTAACGTTTCGGGCAGACCGTATGACGGGT 778
Query 793 TCGCTTGCCATTTCTTCCCCAACGCTCCCATCTACAATGACCGAGAACGCCTCCAGATAT 852
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TCGCTTGCCATTTCTTCCCCAACGCTCCCATCTACAATGACCGCGAACGCCTCCAGATAT 838
Query 853 ACCTCTCTGATGCGGGTATTCTAGCCGTCTGTTTTGGTCTTTACCGTTACGCTGCTGCAC 912
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 ACCTCTCGGATGCGGGTATTCTAGCCGTCTGTTTTGGTCTTTACCGTTACGCCGCTGCAC 898
Query 913 AAGGGATGGCCTCGATGATCTGCCTCTACGGAGTACCGCTTCTGATAGTGAATGCGTTCC 972
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGGAATGGCCTCTATGATCTGCCTCTACGGAGTACCGCTTCTGATAGTGAATGCGTTCC 958
Query 973 TCGTCTTGATCACTTACTTGCAGCACACTCATCCCTCGTTGCCTCACTACGATTCATCAG 1032
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 959 TCGTCTTGATCACTTACTTGCAGCACACTCACCCCTCCTTGCCTCACTACGATTCATCAG 1018
Query 1033 AGTGGGACTGGCTCAGGGGAGCTTTGGCTACCGTAGACAGAGACTACGGAATCTTGAACA 1092
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 AGTGGGACTGGCTCAGGGGAGCTTTGGCTACCGTAGACAGAGACTATGGAATCTTGAACA 1078
Query 1093 AGGTGTTCCACAACATTACAGACACACACGTGGCTCATCACCTGTTCTCGACAATGCCGC 1152
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 AGGTGTTCCACAACATTACAGACACACACGTGGCACATCACCTGTTCTCGACAATGCCGC 1138
Query 1153 ATTATAACGCAATGGAAGCTACAAAGGCGATAAAGCCAATTCTGGGAGACTATTACCAGT 1212
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1139 ATTATAACGCAATGGAAGCTACAAAGGCGATAAAGCCAATACTGGGAGACTATTACCAGT 1198
Query 1213 TCGATGGAACACCGTGGTATGTAGCGATGTATAGGGAGGCAAAGGAGTGTATCTATGTAG 1272
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCGATGGAACACCGTGGTATGTGGCGATGTATAGGGAGGCAAAGGAGTGTATCTATGTAG 1258
Query 1273 AACCGGACAGGGAAGGTGACAAGAAAGGTGTGTACTGGTACAACAATAAGTTATGAGGAT 1332
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 AACCGGACAGGGAAGGTGACAAGAAAGGTGTTTACTGGTACAACAATAAGTTATGAGGAT 1318
Query 1333 GATGGTGAAGAAATTGTCGACCTTTCTCTTGTCTGTTTGTCTTTTGTTAAAGAAGCTATG 1392
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1319 GATGGTGAAGAAATTGTCGACCTTTCTCTTGTCTGGTTGTCTTTTGTTTAAGAAGCTATG 1378
Query 1393 CTTCGTTTTAATAATCTTATTGTCCATTTTGTTGTGTTATGACATTTTGGCTGCTCATTA 1452
|| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 TTTTGTTTCAATAATCTTATTGTCCATTCTGTTGTGTTATGACATTTTGGCTGCTCATTA 1438
Query 1453 TGTTATGTGGGAAGTTA-GTGTTCAAATGTTTTGTGTCGGTATTGTTCTTCTCATCGCTG 1511
||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1439 TGTGACGTGGGAAGTTAAGTGTTCAAATGTTTTGTGTCTGTATTGTTCTTCTCATCGCTG 1498
Query 1512 TTTTGTTGGGATCGTAGAAATGTGACCTTCGGACAGTAAAACTCTTGTA 1560
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTTTCTTGGGATCGTAGAAATGTGACCTTCGGACAGTAAAACTCTTGTA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5