BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12320.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg928955 jgi|Araly1|928955|scaffold_301412.1 1330 0.0 > Ahg928955 jgi|Araly1|928955|scaffold_301412.1 Length=865 Score = 1330 bits (720), Expect = 0.0 Identities = 784/816 (96%), Gaps = 0/816 (0%) Strand=Plus/Plus Query 220 TGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 279 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 50 TGAAGAGCTTGTTGTGCCTAGTTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 109 Query 280 TATGTGGGGTGGATGGAGCATGAGCTCCCCTGAAGCAGCTGAGAAATGTTTCGATTACGA 339 ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 110 TATGTGGGGTGGATGGAGCATGAGCTCTCCTGAAGTAGCTGAGAAATGTTTCGATTACGA 169 Query 340 TGGTTTCAATGGAGAAGGAATGATGTATAGTCAGATGAGTATGAGGACTAGTGAAGAAGA 399 ||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 170 TGGATTCAATGGAGGAGGAATGATGTATAGTCAGATGGGTATGAGGACAAGTGAAGAAGA 229 Query 400 AGAAGAGTCTAAAAGATCAAAGGCTTTCTATGGTGCTTCTTCACTTCACGATTTCGAAGG 459 |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 230 AGAAGAGTCTAAGAGATCTAAGGCTTTCTACGGTGCTTCTTCACTTCATGATTTCGAAGG 289 Query 460 CATCGAACAGATGGATGATATGTTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 519 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 290 AATTGAACAGATGGATGATATATTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 349 Query 520 TGGAGATGTTCACCGCGCGACCAGTAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 579 ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 350 TGGAGATGTTCACCGTGCGTCCAGCAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 409 Query 580 TGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 639 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 TGGTGGTAGAGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 469 Query 640 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACT 699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 470 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAATT 529 Query 700 GTCTTCTGAAGAATTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACTGATGA 759 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 530 GTCTTCTGAAGAACTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACCGATGA 589 Query 760 GACACGCAAATGTTTCCGGGATACTTTTTACCGACTTGCAAGGAGCTCACAAGATAAATC 819 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 590 GACACGCAAATGTTTCCGGGATACCTTTTACCGACTTGCAAGGAGCTCGCAAGATAACTC 649 Query 820 TGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTATGCAAACGTCTAGATATGATTATGG 879 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 650 GGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTGTGCAAACGTCTAGATATGATTATGG 709 Query 880 TGATGGAAACAGGTTTAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 939 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 TGATGGAAACAGGTTGAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 769 Query 940 AGCTGTCGCAAACCTCACATTCAACAAAATGGAATCCAACATAAGCAATTTTCCTCTGTC 999 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 770 AGCCGTCGCAAACCTCACATTTAACAAAATGGAATCCAACATAAGCAATTTTCCGCTGTC 829 Query 1000 GGAAAGAGTACAGTAGCTGCCGCTGATCAAGATCAA 1035 ||| ||||||||||||||||| |||||||||||||| Sbjct 830 GGAGAGAGTACAGTAGCTGCCACTGATCAAGATCAA 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5