BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G12320.1

Length=1218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928955 jgi|Araly1|928955|scaffold_301412.1                       1330    0.0  


> Ahg928955 jgi|Araly1|928955|scaffold_301412.1
Length=865

 Score = 1330 bits (720),  Expect = 0.0
 Identities = 784/816 (96%), Gaps = 0/816 (0%)
 Strand=Plus/Plus

Query  220   TGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGG  279
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  50    TGAAGAGCTTGTTGTGCCTAGTTATCAAGAATCATCATCAGAGACATACCCATCTACTGG  109

Query  280   TATGTGGGGTGGATGGAGCATGAGCTCCCCTGAAGCAGCTGAGAAATGTTTCGATTACGA  339
             ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct  110   TATGTGGGGTGGATGGAGCATGAGCTCTCCTGAAGTAGCTGAGAAATGTTTCGATTACGA  169

Query  340   TGGTTTCAATGGAGAAGGAATGATGTATAGTCAGATGAGTATGAGGACTAGTGAAGAAGA  399
             ||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct  170   TGGATTCAATGGAGGAGGAATGATGTATAGTCAGATGGGTATGAGGACAAGTGAAGAAGA  229

Query  400   AGAAGAGTCTAAAAGATCAAAGGCTTTCTATGGTGCTTCTTCACTTCACGATTTCGAAGG  459
             |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct  230   AGAAGAGTCTAAGAGATCTAAGGCTTTCTACGGTGCTTCTTCACTTCATGATTTCGAAGG  289

Query  460   CATCGAACAGATGGATGATATGTTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA  519
              || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  290   AATTGAACAGATGGATGATATATTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA  349

Query  520   TGGAGATGTTCACCGCGCGACCAGTAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG  579
             ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  350   TGGAGATGTTCACCGTGCGTCCAGCAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG  409

Query  580   TGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC  639
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410   TGGTGGTAGAGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC  469

Query  640   ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACT  699
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  470   ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAATT  529

Query  700   GTCTTCTGAAGAATTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACTGATGA  759
             ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  530   GTCTTCTGAAGAACTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACCGATGA  589

Query  760   GACACGCAAATGTTTCCGGGATACTTTTTACCGACTTGCAAGGAGCTCACAAGATAAATC  819
             |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct  590   GACACGCAAATGTTTCCGGGATACCTTTTACCGACTTGCAAGGAGCTCGCAAGATAACTC  649

Query  820   TGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTATGCAAACGTCTAGATATGATTATGG  879
              ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  650   GGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTGTGCAAACGTCTAGATATGATTATGG  709

Query  880   TGATGGAAACAGGTTTAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG  939
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710   TGATGGAAACAGGTTGAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG  769

Query  940   AGCTGTCGCAAACCTCACATTCAACAAAATGGAATCCAACATAAGCAATTTTCCTCTGTC  999
             ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  770   AGCCGTCGCAAACCTCACATTTAACAAAATGGAATCCAACATAAGCAATTTTCCGCTGTC  829

Query  1000  GGAAAGAGTACAGTAGCTGCCGCTGATCAAGATCAA  1035
             ||| ||||||||||||||||| ||||||||||||||
Sbjct  830   GGAGAGAGTACAGTAGCTGCCACTGATCAAGATCAA  865



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45480639981


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5