BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12350.1 Length=1583 Score E Sequences producing significant alignments: (Bits) Value Ahg928959 jgi|Araly1|928959|scaffold_301416.1 1982 0.0 > Ahg928959 jgi|Araly1|928959|scaffold_301416.1 Length=1310 Score = 1982 bits (1073), Expect = 0.0 Identities = 1221/1294 (94%), Gaps = 3/1294 (0%) Strand=Plus/Plus Query 42 AGAAGTTTCATCTGAGAAAAGATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAG 101 |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAATTTCGTCTGAGAAAA-ATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAA 59 Query 102 GATCTCCAGCTCCGAATCTTATCCCTCCTCACACCAGCGGAGATCTCCAGCTTCGCCTGC 161 |||||||||||||| ||||| || ||||| | ||||| ||||||||||||||||||||| Sbjct 60 GATCTCCAGCTCCGCATCTTGTCATTCCTCTCCCCAGCAGAGATCTCCAGCTTCGCCTGC 119 Query 162 ACATCGAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 221 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACATCTAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 179 Query 222 GATCAGAGATGGGGGAAGAAAACTAAGATCCAGAAATGGGCAAACGGTCAAATCCCTTAT 281 |||||| ||||||| |||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct 180 GATCAGCGATGGGGCAAGAAAACGAAGATCCAGAAATGGGGAAATGGTCAAATCCCTTAT 239 Query 282 AGACACCTTTACAAGACTCTAAAGGGATTGGAGAATCTAATTGGCTTCTGGCGTCTCTGC 341 |||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 240 AGACTCCTTTACAAGACTCTAAAGGGATTGGAAAATCTTATTGGATTCTGGCGTCTCTGC 299 Query 342 GGCAGAGCAAATCCCGCCGCTTCATCGCCGCCGCTTGTTTTCTTCGATTGGGGTTCTTCT 401 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 300 GGCAGAGCAAATCCCGCAGCTTCATCGCCACCGCTTGTTTTTTTCGATTGGGGGCCTTCT 359 Query 402 TTTATATTGGGATCTAGAGTTTTATCCACCGGAGATGATACTTATGAGGTAAAGAAGACA 461 ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| Sbjct 360 TTTGTATTGGGATCTAGAGTTTTATCTACCGGAGATGAAACTTATCAGGTAAAAAAGACA 419 Query 462 CCTTTTCTCTTAATGGGGATTTCGCCGGAGGGACGATCTGAGAATTTCTTGGATCTCGTC 521 |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 420 CCTTTTCTCTTATTGGGGATTTCGTCGGAGGGACGAACTGAGAATTTCTTGGATCTCGTC 479 Query 522 GGTGGTAATCTCAGATCTGTGGATGATGATTTGAAAGAATTAGAAGCTTCTAACAATCTC 581 || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 480 GGAGGTTATCTCAGATCTGTGGATGATGATCTGAAAGAATTAGAAGCTTCTGACAATCTC 539 Query 582 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGT 641 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGC 599 Query 642 TTTACCAACAACAATCGTAGAGAAGACCAGAGGAGCTCAGGGGATGAGAGTGATGATTTG 701 |||| |||||||| || ||||||||| |||| |||||||||||| ||||||||||||||| Sbjct 600 TTTATCAACAACAGTCTTAGAGAAGAGCAGAAGAGCTCAGGGGACGAGAGTGATGATTTG 659 Query 702 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAATTGGCGAATAAGACGAGTCCAGGC 761 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 660 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAACTGGCGAATAAGACGAGTCCAGGC 719 Query 762 GGTGACAGGAGGAGACAGAAGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 821 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 720 GGTGACAGGAGGAGACAGAGGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 779 Query 822 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAGACCCTTACAA 881 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 780 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAAACCATTACAA 839 Query 882 GGCTTATGGAAGGGTTTCTGTGAGGGAAGCATCGAGTTGTATTTGGTCAAATATGATGAA 941 || ||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct 840 GGTTTATGGAAGGGTTTCTGTGAGGGAAGCATGGAGTTATATCTGGTCAAATACGATGAA 899 Query 942 GTTGGAGGCATTATATGCAGAAAAGTAGAGGACTTGTCCCTCTCACGGTACACTCCTCCT 1001 |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 900 GTTGGAGGCATTGTATGCAGAAAAGTAGAGGACTTGTCTCTCTCACGGCACACTCCTCCT 959 Query 1002 GTGTTCTGGACACCCAAACATACGTTCATCAGATCTCCTTTTTCAGCTGAAGAAGAGCTG 1061 ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| Sbjct 960 GTGTTCTGGACACCCAAACATGCGTTTATCAGATCTCCCTTTTCAGCTGAAGAAGAGCTG 1019 Query 1062 CTACTGAATAGTCGAATCCATATTAGCCCTTTCGCTGAAGTTCATGAAAATGTTGTATCT 1121 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1020 CTACTGAATAGTCGAATCCATATTAGCCCTCTCGCCGAAGTTCATGAAAATGTTGTATCT 1079 Query 1122 GGAATGTTGTACATGAAGTCTAGCTGCGATCTGGTGTTGCCAGGAGAACCTGGC-AATGG 1180 ||||||||||||||||||||||| | |||||||||||||||||||||| | ||| ||||| Sbjct 1080 GGAATGTTGTACATGAAGTCTAGTTACGATCTGGTGTTGCCAGGAGAAGC-GGCCAATGG 1138 Query 1181 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGACAATGGGACTTTCGGTTT 1240 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1139 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGAAAATGGGACTTTCGGTTT 1198 Query 1241 CGGGTTTCTTCGAGATCAATTTATCATTGATCTGAAACGTGTTGCTCTGGAAGATGGGTG 1300 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct 1199 CGGGTTTCTTCGAGATCAATTTGTCATTGATCTGAAACGTGTTGCCCTGGAAGATGGTTG 1258 Query 1301 TCTAGCTGACGAGGTAGAAGCTTGTATGTGATTT 1334 ||||||||||||||||||||| | |||||||||| Sbjct 1259 TCTAGCTGACGAGGTAGAAGCGTCTATGTGATTT 1292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59306511465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5