BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12490.2 Length=866 Score E Sequences producing significant alignments: (Bits) Value Ahg928970 jgi|Araly1|928970|scaffold_301427.1 933 0.0 > Ahg928970 jgi|Araly1|928970|scaffold_301427.1 Length=651 Score = 933 bits (505), Expect = 0.0 Identities = 604/652 (93%), Gaps = 5/652 (1%) Strand=Plus/Plus Query 117 TTTAGGCTTCTGCAACGAAGAGATGGCTTTAGTCGGAGGTGTTGGCGATGTCCCTGCTAA 176 |||||| ||||||||||| || ||||||||| |||| || ||| ||||||| |||||||| Sbjct 1 TTTAGGGTTCTGCAACGACGACATGGCTTTACTCGGTGGCGTTCGCGATGTTCCTGCTAA 60 Query 177 TCAGAACAGTGGTGAGGTTGAGAGCCTCGCTCGTTTCGCTGTCGATGAACACAACAAGAA 236 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 CCAGAACAGTGGTGAGGTCGAGAGCCTCGCTCGTTTCGCTGTCGATGAGCACAACAAGAA 120 Query 237 AGAGAATGCACTTCTTGAGTTTGCGAGAGTTGTGAAGGCGAAAGAACAAGTTGTAGCCGG 296 |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| Sbjct 121 AGAGAATGCACTTCTTGAGTTTGCTAGAGTGGTGAAAGCTAAAGAACAAGTTGTAGCCGG 180 Query 297 AACACTGCATCACCTGACTCTGGAGATTCTCGAGGCAGGACAGAAGAAGCTTTACGAAGC 356 |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||||| Sbjct 181 AACAATGCATCACCTGACTCTGGAGATTCTCGATGCAGGGGAGAAAAAGCTTTACGAAGC 240 Query 357 CAAAGTGTGGGTCAAGCCGTGGTTGAACTTTAAAGAGTTACAGGAGTTCAAGCCT---GC 413 |||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| || Sbjct 241 CAAAGTGTGGGTGAAGTCATGGTTGAACTTTAAGGAGTTACAGGAGTTCAAGCCTGCCGC 300 Query 414 CAGTGATGCCCCTGCTATCACTTCCTCCGATCTTGGCTGCAAGCAAGGTGAACATGAATC 473 ||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||| Sbjct 301 CAGTGATGCCCCTGCAATCACTCCCTCCGATCTTGGCTGCAAACAAGATGAACATGAATC 360 Query 474 TGGATGGAGGGAAGTTCCCGGAGATGATCCAGAAGTGAAGCATGTTGCTGAGCAGGCTGT 533 |||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct 361 TGGATGGAGGGAAGTTCCAGGAGATGATCCAGAAGTGCAGCACGTTGCTGAGCATGCTGT 420 Query 534 CAAGACCATTCAGCAGAGGTCTAACTCCTTGTTCCCTTATGAACTTCTGGAGGTTGTGCA 593 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 421 CAAGACCATCCAGCAGAGGTCTAACTCCTTGTTCCCTTATCAACTTCTGGAGGTTGTGCA 480 Query 594 TGCTAAAGCTGAGGTAACCGGCGAGGCTGCAAAATACAACATGCTACTGAAGTTGAAGAG 653 |||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 481 TGCTAACGCTGAGGTTACCGGCGAGGCTGCCAAATACAACATGCTGCTGAAGTTGAAGAG 540 Query 654 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 600 Query 714 TCT-CAACCACGCGGAGCAACACCATGACTAGTCCCTCTCCTTTGTTTATGT 764 || ||||| | |||||||||||||||||||||||||||| ||||||||| Sbjct 601 -CTTCAACCGCATGGAGCAACACCATGACTAGTCCCTCTCCCCTGTTTATGT 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32061373197 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5