BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12580.1
Length=2282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928978 jgi|Araly1|928978|scaffold_301435.1 3157 0.0
Ahg892159 jgi|Araly1|892159|Al_scaffold_0006_155 1471 0.0
Ahg314911 jgi|Araly1|314911|fgenesh1_pm.C_scaffold_1003691 1330 0.0
> Ahg928978 jgi|Araly1|928978|scaffold_301435.1
Length=1996
Score = 3157 bits (1709), Expect = 0.0
Identities = 1900/1994 (95%), Gaps = 5/1994 (0%)
Strand=Plus/Plus
Query 78 CCGGCGAACAATTCTGATCTCTAATAATGGCGGGTAAAGGTGAAGGTCCAGCTATCGGTA 137
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 CCGGCGAACAATTCTGATCTC---TAATGGCGGGTAAAGGTGAAGGTCCAGCTATTGGTA 57
Query 138 TCGATCTCGGTACAACCTACTCTTGCGTCGGTGTTTGGCAACATGACCGCGTCGAAATCA 197
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 58 TCGATCTCGGTACAACTTACTCTTGCGTCGGTGTTTGGCAACATGACCGCGTTGAAATCA 117
Query 198 TCGCCAACGATCAAGGCAACCGCACCACTCCTTCCTACGTTGCTTTCACTGACAGCGAGC 257
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 118 TCGCCAACGATCAAGGCAACCGTACCACTCCTTCCTACGTTGCTTTCACTGATAGCGAGC 177
Query 258 GTCTCATCGGGGATGCTGCCAAGAATCAAGTCGCCATGAACCCTACCAACACCGTCTTCG 317
|| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTTGATCGGAGACGCTGCCAAGAATCAAGTCGCCATGAACCCTACCAACACCGTCTTCG 237
Query 318 ATGCTAAGCGTCTAATCGGAAGAAGATACAGTGATCCCTCTGTTCAAGCGGATAAGAGTC 377
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 ATGCTAAGCGTCTAATTGGAAGAAGATACAGTGATCCCTCTGTTCAAGCGGACAAGAGTC 297
Query 378 ACTGGCCTTTTAAGGTTGTTTCCGGTCCAGGTGAGAAGCCTATGATTGTGGTTAACCACA 437
|||||||||| |||||| |||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 298 ACTGGCCTTTCAAGGTTATTTCTGGTCCTGGTGAGAAGCCTATGATCGTGGTCAACCACA 357
Query 438 AGGGAGAGGAGAAACAGTTCTCTGCTGAGGAAATCTCGTCGATGGTTCTTATTAAGATGC 497
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 358 AGGGAGAGGAGAAACAGTTCTCTGCTGAGGAAATCTCCTCGATGGTTCTCGTTAAGATGC 417
Query 498 GGGAGATTGCAGAAGCTTTCCTTGGTTCTCCTGTTAAGAACGCTGTCGTTACAGTTCCTG 557
| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 418 GCGAGATTGCAGAAGCTTTCCTTGGCTCTCCGGTTAAGAACGCTGTGGTTACAGTTCCTG 477
Query 558 CTTATTTCAACGACTCTCAGCGTCAAGCGACTAAGGACGCTGGAGTTATCTCTGGTCTCA 617
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 478 CTTATTTCAACGACTCTCAGCGTCAGGCGACTAAGGACGCTGGAGTTATCTCTGGTCTCA 537
Query 618 ACGTGATGCGTATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGGTCTTGACAAGA 677
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ATGTCATGCGTATCATCAATGAGCCAACTGCTGCTGCTATTGCATACGGTCTTGACAAGA 597
Query 678 AGGCGTCGAGTGTTGGCGAGAAGAATGTT-TTGATCTTTGATTTGGGAGGTGGTACTTTT 736
||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 598 AGGCGTCGAGTGTCGGCGAGAAGAATGTTCTT-ATCTTTGATTTGGGCGGTGGTACTTTT 656
Query 737 GATGTGTCTTTGCTTACGATTGAGGAAGGTATCTTTGAAGTCAAGGCAACTGCTGGTGAC 796
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 657 GATGTGTCTTTGCTTACGATTGAGGAAGGTATCTTTGAAGTGAAGGCCACGGCTGGTGAC 716
Query 797 ACGCATCTTGGTGGTGAGGACTTCGACAACAGGATGGTTAATCATTTTGTTCAGGAGTTT 856
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 ACGCATCTTGGTGGTGAGGACTTTGACAACAGGATGGTTAATCATTTTGTTCAGGAGTTT 776
Query 857 AAGAGGAAGAACAAGAAGGATATTACTGGGAACCCGAGAGCTTTGAGGAGGCTTAGGACA 916
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 777 AAGAGGAAGAACAAGAAGGATATTACTGGCAACCCGAGAGCTTTGAGGAGGCTCAGGACA 836
Query 917 GCTTGTGAGCGGGCGAAGAGAACTCTTTCTTCGACTGCTCAGACGACTATAGAGATTGAC 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 GCTTGTGAGCGGGCGAAGAGAACTCTTTCTTCGACTGCTCAGACGACTATAGAGATCGAC 896
Query 977 TCTCTTTTTGAGGGTATTGATTTCTACACTACCATCACTCGTGCTAGGTTCGAGGAGCTC 1036
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 TCTCTTTTTGAGGGTATTGATTTCTACACAACCATCACTCGTGCTAGGTTCGAGGAGCTC 956
Query 1037 AACATGGATTTGTTTAGGAAGTGTATGGAGCCAGTGGAGAAGTGTTTGAGGGATGCTAAG 1096
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 957 AACATGGATTTATTTAGGAAGTGTATGGAACCAGTGGAGAAGTGTTTGAGAGATGCTAAG 1016
Query 1097 ATGGACAAGAGCAGTGTTCATGATGTTGTTCTTGTTGGTGGCTCTACAAGGATTCCCAAA 1156
|||||||||| |||||| ||||||||||||||||||||||| |||||||| || |||||
Sbjct 1017 ATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGTTCTACAAGAATCCCCAAG 1076
Query 1157 GTGCAGCAGCTTTTGCAAGACTTCTTCAATGGGAAAGAGCTCTGTAAAAGCATTAACCCG 1216
||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1077 GTGCAGCAGCTATTGCAAGACTTTTTCAACGGGAAAGAGCTCTGCAAAAGCATTAACCCT 1136
Query 1217 GACGAGGCTGTTGCTTACGGAGCAGCTGTGCAAGCTGCAATCTTGAGCGGTGAAGGGAAT 1276
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1137 GACGAGGCTGTTGCTTATGGAGCAGCTGTTCAAGCTGCAATCTTGAGCGGTGAAGGGAAT 1196
Query 1277 GAGAAGGTCCAGGACTTGTTACTTCTTGATGTCACTCCTCTGTCCTTGGGTTTGGAAACT 1336
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GAGAAGGTCCAAGACTTGTTGCTTCTTGATGTCACTCCTCTGTCCTTGGGTTTGGAAACT 1256
Query 1337 GCCGGTGGTGTTATGACTGTTTTGATTCCGAGGAACACCACAATTCCGACCAAGAAAGAG 1396
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCCGGTGGTGTTATGACTGTCTTGATTCCGAGGAACACCACAATTCCGACCAAGAAAGAG 1316
Query 1397 CAGATATTCTCTACCTATTCAGACAACCAGCCCGGTGTACTGATCCAGGTCTACGAAGGA 1456
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGATCTTCTCTACATATTCAGACAACCAGCCCGGTGTACTGATCCAGGTCTACGAAGGA 1376
Query 1457 GAGAGGGCACGAACAAAGGACAACAACCTTTTGGGAAAGTTCGAGCTCAGTGGTATACCA 1516
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1377 GAGAGGGCACGGACAAAGGACAACAACCTTTTGGGAAAGTTCGAGCTCAGCGGTATACCA 1436
Query 1517 CCTGCTCCACGAGGTGTACCGCAGATTACTGTCTGTTTCGACATCGACGCCAATGGTATC 1576
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1437 CCTGCTCCACGAGGTGTTCCACAAATTACTGTCTGTTTCGACATCGACGCCAATGGTATC 1496
Query 1577 CTGAATGTGTCGGCTGAGGACAAGACGACTGGTCAGAAGAACAAGATCACAATCACAAAC 1636
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 CTGAATGTTTCGGCTGAGGACAAGACGACTGGACAGAAGAACAAGATCACAATCACAAAC 1556
Query 1637 GACAAGGGAAGGTTATCAAAGGAAGAGATCGAGAAGATGGTACAAGAGGCAGAGAAGTAC 1696
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1557 GACAAGGGAAGGTTATCAAAGGAAGAGATCGAGAAGATGGTACAAGAAGCAGAGAAGTAC 1616
Query 1697 AAGGCTGAGGATGAAGAACACAAGAAGAAGGTGGATGCAAAGAACGCTCTCGAGAACTAT 1756
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1617 AAGGCCGAGGATGAAGAACACAAGAAGAAGGTTGATGCAAAGAACGCTCTAGAGAACTAT 1676
Query 1757 GCATACAACATGAGGAACACGATCAAGGACGAGAAGATCGCATCTAAGCTTGACGCAGCT 1816
|||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct 1677 GCATACAACATGAGGAACACTATCAAGGACGAGAAGATCGCGTCGAAGCTTGATGCAGCT 1736
Query 1817 GACAAGAAGAAGATTGAGGATGCAATCGACCAAGCTATTGAATGGTTAGATGGGAATCAA 1876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GACAAGAAGAAGATTGAGGATGCAATCGACCAAGCTATTGAATGGTTAGATGGGAATCAG 1796
Query 1877 CTGGCTGAGGCAGATGAGTTCGAGGATAAGATGAAGGAGCTCGAGTCTCTTTGCAACCCT 1936
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 CTGGCTGAGGCAGATGAGTTTGAGGATAAGATGAAGGAGCTCGAGTCTATTTGCAACCCA 1856
Query 1937 ATTATTGCAAGAATGTACCAAGGAGCTGGGCCTGATATGGGTGGTGCAGGAGGAATGGAT 1996
|| |||||||||||||||||||| || |||||||||||||||||||| | ||||||||||
Sbjct 1857 ATCATTGCAAGAATGTACCAAGGTGCCGGGCCTGATATGGGTGGTGCTGCAGGAATGGAT 1916
Query 1997 GACGACACACCTGCTGGTGGTAGCGGCGGTGCTGGCCCAAAGATTGAAGAAGTTGATTAA 2056
||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1917 GACGATGCTCCTGCTGGTGGTAGCGGCGGTGCTGGCCCCAAGATTGAAGAAGTTGATTAA 1976
Query 2057 GCCTTTTGGCTTTT 2070
|| |||| ||||||
Sbjct 1977 GCTTTTTAGCTTTT 1990
> Ahg892159 jgi|Araly1|892159|Al_scaffold_0006_155
Length=1962
Score = 1471 bits (796), Expect = 0.0
Identities = 1534/1888 (81%), Gaps = 60/1888 (3%)
Strand=Plus/Plus
Query 104 ATGGCGGGTAAAGGTGAAGGTCCAGCTATCGGTATCGATCTCGGTACAACCTACTCTTGC 163
||||| |||||||| |||||||| || |||||||||||||| ||||| || |||||||||
Sbjct 1 ATGGCCGGTAAAGGAGAAGGTCCTGCGATCGGTATCGATCTTGGTACGACGTACTCTTGC 60
Query 164 GTCGGTGTTTGGCAACATGACCGCGTCGAAATCATCGCCAACGATCAAGGCAACCGCACC 223
||||| || |||||||| ||||| || || |||||||| || |||||||| ||| | |||
Sbjct 61 GTCGGAGTATGGCAACACGACCGTGTTGAGATCATCGCTAATGATCAAGGAAACAGAACC 120
Query 224 ACTCCTTCCTACGTTGCTTTCACTGACAGCGAG-CGTCTCATCGGGGATGCTGCCAAGAA 282
||||| || |||||||||||||| ||| |||| || | ||||| |||||||| |||||
Sbjct 121 ACTCCGTCGTACGTTGCTTTCACCGACTCCGAGAGGT-TGATCGGTGATGCTGCTAAGAA 179
Query 283 TCAAGTCGCCATGAACCCTACCAACACCGTCTTCGATGCTAAG-CGTCTAATCGGAAGAA 341
|| ||||| |||||||| ||||| || |||||||| ||| || | || || | |
Sbjct 180 CCAGGTCGCTATGAACCCGGTTAACACTGTTTTCGATGCAAAGAGGT-TGATTGGTCGTA 238
Query 342 GATACAGTGATC-CCTCTGTTC-AAGCGGATA-AGAGTCACTGGCCTTTTAAGGTTGTTT 398
|||||||||| | | ||||| | ||| || | | ||| | |||||||| ||| | | |
Sbjct 239 GATACAGTGA-CGCATCTGTCCAAAG-TGACAGACAGTTA-TGGCCTTTCAAGATCATCT 295
Query 399 CCGGTCCAGGTGAGAAGCCTATGATTGTGGT-TAACCACAAGGGAGAGGAGAAACAGTTC 457
|||| | | ||||| || |||||||| || || |||||||||| |||||||| |||
Sbjct 296 CCGGAACTGCAGAGAAACCAATGATTGTCGTCGAA-TACAAGGGAGAAGAGAAACAATTC 354
Query 458 TCTGCTGAGGAAATCTCGTCGATGGTTCTTATTAAGATGCGGGAGATTGCAGAAGCTTTC 517
||||||| |||||||| || |||||||||||||||||||| ||||| || |||||||||
Sbjct 355 GCTGCTGAAGAAATCTCTTCCATGGTTCTTATTAAGATGCGTGAGATCGCTGAAGCTTTC 414
Query 518 CTTGGTTCTCCTGTTAAGAACGCTGTCGTTACAGTTCCTGCTTATTTCAACGACTCTCAG 577
||||| || | || ||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 415 CTTGGCACTACGGTCAAGAACGCTGTGGTTACTGTTCCTGCTTACTTCAATGACTCTCAA 474
Query 578 CGTCAAGCGACTAAGGACGCTGGAGTTATCT-CTGGTCTCAACGTGATGCGTATCATCAA 636
|||||||| || ||||| ||||| || || | ||||| | || || |||||||||||||
Sbjct 475 CGTCAAGCCACAAAGGATGCTGGTGTGAT-TGCTGGTTTGAATGTTTTGCGTATCATCAA 533
Query 637 TGAGCCAACTGCTGCTGCTATTGCTTACGGTCTTGACAAGAAGGCGTCGAGTGTTGGCGA 696
||||| || ||||||||||||||||| ||||||||||||||||| | |||||||| ||
Sbjct 534 CGAGCCCACCGCTGCTGCTATTGCTTATGGTCTTGACAAGAAGGCCACAAGTGTTGGAGA 593
Query 697 GAAGAATGTTTTGATCTTTGAT-TTGGGAGGTGGTACTTTTGATGTGTCT-TTGCTTACG 754
|||||||||||||||||||||| || || |||||||| |||||||| ||| || |||||
Sbjct 594 GAAGAATGTTTTGATCTTTGATCTT-GGTGGTGGTACATTTGATGTCTCTCTT-CTTACC 651
Query 755 ATTGAGGAAGGTATCTTTGAAGTCAAGGCAACTGCTGGTGACACGCATCTTGGTGGTGAG 814
||||| |||||||||||||| ||||||||||| |||||||| || ||||||||||||||
Sbjct 652 ATTGAAGAAGGTATCTTTGAGGTCAAGGCAACAGCTGGTGATACTCATCTTGGTGGTGAA 711
Query 815 GACTTCGACAACAGGATGGTTAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAG 874
|| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 712 GATTTTGACAACAGAATGGTTAATCACTTTGTTCAAGAGTTTAAGAGGAAGAACAAGAAG 771
Query 875 GATATTACTGGGAACCCGAGAGCTTTGAGGAGGCTT-AGGACAGCTTGTGAGCGGGCGAA 933
||||| || || | |||||||||| | |||||| || || |||||||||||| | || ||
Sbjct 772 GATATCACCGGTAGCCCGAGAGCTCTCAGGAGG-TTGAGAACAGCTTGTGAGAGAGCAAA 830
Query 934 GAGAACTCTTTCTTCGACTGCTCAGACGACTATAGAGATTGACTCTCTT-TTTGAGGGTA 992
||| ||||||||||| || || |||||||| || |||||||||||| || ||||| || |
Sbjct 831 GAGGACTCTTTCTTCCACCGCGCAGACGACCATCGAGATTGACTCT-TTGTTTGATGG-A 888
Query 993 T-TGATTTCTACACTACCA-TCACTCGTGCTAGGTTCGAGGAGCTCAACATGGATTTGTT 1050
||| ||||| || ||| |||| |||||||| || || ||| | ||||||||| | ||
Sbjct 889 GCTGACTTCTATTCT-CCAATCACCCGTGCTAGATTTGAAGAGATGAACATGGATCTCTT 947
Query 1051 TAGGAAGTGTATGGAGCCAGTGGAGAAGTGT-TTGAGGGATGCTAAGATGGACAAGAGCA 1109
|||||||||||||||||| || ||||||||| || | ||||| ||||||||||||||||
Sbjct 948 TAGGAAGTGTATGGAGCCTGTTGAGAAGTGTCTTC-GTGATGCCAAGATGGACAAGAGCA 1006
Query 1110 GTGTTCATGATGTTGTTCTTGTTGGTGGCTCTACAAGGATTCCCAAAG-TGCAGCAGCTT 1168
|||||| ||| |||| ||||||||||| || || | || ||| ||| | ||||| ||
Sbjct 1007 CTGTTCACGATATTGTCCTTGTTGGTGGATCCACCCGTAT-CCCTAAGGTTCAGCAA-TT 1064
Query 1169 --TTGCAAGACTTCTTCAATGGGAAAGAGCTCTGTAAAAGC-ATTAACCCGGACGAGGCT 1225
|| || ||||||||||| || |||||||| || || | || ||||| || ||||||
Sbjct 1065 GCTT-CAGGACTTCTTCAACGGCAAAGAGCTTTGCAAGT-CTATCAACCCTGATGAGGCT 1122
Query 1226 GTTGCTTACGGAGCAGCTGTGCAAGCTGCAATCTTGAGCGGTGAAGGGAATGAGAAGGTC 1285
|| |||||||| |||||||| || ||||| ||| | || |||||||| || ||||| ||
Sbjct 1123 GTAGCTTACGGTGCAGCTGTTCAGGCTGCGATCCTAAGTGGTGAAGGAAACGAGAAAGTT 1182
Query 1286 CAGGA-CTTGTTACTT-CTTGATGTCACTCCTCTGTCC-TTGGGT-TTGGAAACTGCCGG 1341
|| || ||| | | || || |||||||||||||| ||| |||| | ||| ||||||| ||
Sbjct 1183 CAAGATCTTCT-A-TTGCTCGATGTCACTCCTCTCTCCCTTGG-TCTTG-AAACTGCGGG 1238
Query 1342 TGGTGTTATGACTGTTTTGATTCCGAGGAACACCACAATTCCGACCAAGAAAGAGCAGAT 1401
|||||| ||||| |||||||| || ||||| |||||||| |||||||| || ||| |
Sbjct 1239 TGGTGTCATGACCACTTTGATTCAAAGAAACACAACAATTCCAACCAAGAAGGAACAGGT 1298
Query 1402 ATTCTCTACCTATTCAGACAACCAGCCCGGTGTACTGATCCAGGTCTACGAAGGAGAGAG 1461
||||| || ||||||||||||||||| || || ||||||| |||| ||||| |||||
Sbjct 1299 CTTCTCAACTTATTCAGACAACCAGCCTGGCGTTTTGATCCAAGTCTTTGAAGGTGAGAG 1358
Query 1462 GGC-ACGAACAAAGGACAACAACCTTTTGGG-AAAGTTCGAGCTCAGTGGTATACCACCT 1519
||| | |||| |||||||||||||| | || ||| |||||||| ||| || || |||
Sbjct 1359 GGCTA-GAACCAAGGACAACAACCTCCTCGGCAAA-TTCGAGCTTTCTGGAATCCCTCCT 1416
Query 1520 GCTCCACGAGGTGTACCGCAGATTACTGTCTGTTTCGACATCGACGCCAATGGTATCCTG 1579
|| ||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1417 GCCCCACGAGGTGTCCCTCAGATCACTGTCTGCTTCGACATTGACGCCAATGGTATCCTT 1476
Query 1580 AATGTGTCGGCTGAGGACAAGACGACTGGTCAGAAGAACAAGATCACAATCACAAACGAC 1639
||||| || |||||||||||||| ||||| | |||||||||||||| ||||| || |||
Sbjct 1477 AATGTTTCTGCTGAGGACAAGACCACTGGAAAAAAGAACAAGATCACTATCACTAATGAC 1536
Query 1640 AAGGGAAGGTTATC-AAAGGAAGAGATCGAGAAGATGGTACAAGAGGCAGAGAAGTACAA 1698
||||| | || || |||| | || || ||||||||||| ||||| || |||||||||||
Sbjct 1537 AAGGGTCGTTTGTCTAAAG-AGGATATTGAGAAGATGGTTCAAGAAGCTGAGAAGTACAA 1595
Query 1699 GGCTGAGGATGAAGAACACAAGAAGAAGGTGGATGCAAAGAACGCTCTCGAGAACTATGC 1758
| |||||||||| || |||||||||||||| || || ||||||||||| |||||||| ||
Sbjct 1596 GTCTGAGGATGAGGAGCACAAGAAGAAGGTTGAAGCCAAGAACGCTCTTGAGAACTACGC 1655
Query 1759 ATACAACATGAGGAACACGATCAAG-GACGAGAAGATCGCATCT-AAGCTTGACG-CAGC 1815
||||||||||||||||| ||| | || |||||||||| | |||||| || | ||
Sbjct 1656 TTACAACATGAGGAACACAATCC-GTGATGAGAAGATCGG-TGAGAAGCTTC-CGGCTGC 1712
Query 1816 TGACAAGAAGAAGATTGAGGA-TGCAATCGACCAAGCTATTGAATGGTTAGATGGGAATC 1874
|||||||||||| ||||||| | | || || |||| || ||||| ||||||| || |
Sbjct 1713 AGACAAGAAGAAGGTTGAGGACT-CGATTGAGGAAGCAATCCAATGGCTAGATGGTAACC 1771
Query 1875 AACTGGCTGAGGCAGATGAGTTCGAGGATAAGATGAAGGAGCTCGAGTCTCTTTGCAACC 1934
|| ||||||| || || ||||| || || |||||||||||| | ||| | ||||||| |
Sbjct 1772 AATTGGCTGAAGCTGACGAGTTTGAAGACAAGATGAAGGAGTTGGAGAGTGTTTGCAATC 1831
Query 1935 CTATTATTGC-AAGAATGTACCAAGGAG 1961
| || || || |||| |||| |||||||
Sbjct 1832 CGATCATCGCTAAGA-TGTATCAAGGAG 1858
> Ahg314911 jgi|Araly1|314911|fgenesh1_pm.C_scaffold_1003691
Length=1821
Score = 1330 bits (720), Expect = 0.0
Identities = 1489/1852 (80%), Gaps = 86/1852 (5%)
Strand=Plus/Plus
Query 104 ATGGCGGGTAAAGGTGAAGGTCCAGCTATCGGTATCGATCTCGGTACAACCTACTCTTGC 163
||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||
Sbjct 1 ATGGCTGGTAAAGGAGAAGGTCCAGCGATCGGAATTGATCTTGGTACTACGTACTCTTGT 60
Query 164 GTCGGTGTTTGGCAACATGACCGCGTCGAAATCATCGCCAACGATCAAGGCAACCGCACC 223
|| || || |||||||| ||||| || || ||||| || || |||||||| ||| | |||
Sbjct 61 GTTGGAGTATGGCAACACGACCGTGTTGAGATCATTGCTAATGATCAAGGTAACAGAACC 120
Query 224 ACTCCTTCCTACGTTGCTTTCACTGACAGC-GAGC-GTCTCATCGGGGATGCTGCCAAGA 281
|| ||||| |||||||||||||| ||| | |||| || | ||||| |||||||| ||||
Sbjct 121 ACACCTTCGTACGTTGCTTTCACCGAC-TCTGAGCGGT-TGATCGGTGATGCTGCTAAGA 178
Query 282 ATCAAGTCGCCATGAACCCTACCAACACCGTCTTCGATGCTAAG-CGTCTAATCGGAAGA 340
|||| || ||||||||||| |||||||| ||||| || ||| || | || || |
Sbjct 179 ATCAGGTTGCCATGAACCCGGTTAACACCGTTTTCGACGCAAAGAGGT-TGATTGGTCGT 237
Query 341 AGATACAGTGATC-CCTCTGTTC-AAGCGGATAAG-AGTCACTGGCCTTTTAAGGTTGTT 397
| || |||| | | | ||||| | ||| || | | ||| | |||||||| || | | |
Sbjct 238 ATATTCAGT-AACGCATCTGTCCAAAG-TGACATGAAGTTA-TGGCCTTTCAA-GATCAT 293
Query 398 TCC-GGTCCAGGTGAGAAGCCTATGATTGTGGTTAACCACAAGGGAGAGGAGAAACAGTT 456
|| || | || || || || |||||| |||| ||| |||| ||||| |||||||| ||
Sbjct 294 CCCTGGACAAGCAGACAAACCAATGATTTTGGTAAACTACAAAGGAGAAGAGAAACAATT 353
Query 457 CTCTGCTGAGGAAATCTCGTCGATGGTTCTTATTAAGATGCGGGAGATTGCAGAAGCTTT 516
| |||| || |||||||| || |||||||| |||||||||| |||||||||||||||||
Sbjct 354 CGCTGCGGAAGAAATCTCTTCCATGGTTCTCGTTAAGATGCGTGAGATTGCAGAAGCTTT 413
Query 517 CCTTGGTTCTCCTG-TTAAGAACGCTGTCGTTACAGTTCCTGCTTATTTCAACGACTCTC 575
|||||| ||| | | | ||||||||||| || || ||||||||||| ||||| |||||||
Sbjct 414 CCTTGGCTCTTC-GATCAAGAACGCTGTGGTCACTGTTCCTGCTTACTTCAATGACTCTC 472
Query 576 AGCGTCAAGCGACTAAGGACGCTGGAGTTATCT-CTGGTCTCAACGTGATGCGTATCATC 634
| |||||||| || ||||||||||| || || | ||||| | || || |||||||||||
Sbjct 473 AACGTCAAGCTACAAAGGACGCTGGTGTGAT-TGCTGGTTTGAATGTTTTGCGTATCATC 531
Query 635 AATGAGCCAACTGCTGCTGCTATTGCTTACGGTCTTGACAAGAAGGCGTCGAGTGTTGGC 694
|| ||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 532 AACGAGCCTACTGCTGCTGCTATTGCTTATGGTCTTGACAAGAAGGCGACCAGTGTTGGA 591
Query 695 GAGAAGAATGTTTTGATCTTTGAT-TTGGGAGGTGGTACTTTTGATGTGTCT-TTGCTTA 752
| ||||| || |||||||||||| || || ||||||||||||||||| ||| || ||||
Sbjct 592 TACAAGAACGTGTTGATCTTTGATCTT-GGTGGTGGTACTTTTGATGTTTCTCTT-CTTA 649
Query 753 CGATTGAGGAAGGTATCTTTGAAGTCAAGGCAACTGCTGGTGACACGCATCTTGGTGGTG 812
| ||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 650 CCATTGAAGAAGGTATCTTTGAGGTCAAGGCAACAGCTGGTGACACTCATCTTGGTGGCG 709
Query 813 AGGACTTCGACAACAGGATGGTTAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGA 872
| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 710 AAGATTTCGACAACAGAATGGTTAATCACTTTGTTCAAGAGTTTAAGAGGAAGAACAAGA 769
Query 873 AGGATATTACTGGGAACCCGAGAGCT-TTGAGGAGGCTT-AGGACAGCTTGTGAGCGGGC 930
||||||| ||||| |||||||||||| || |||||| || || || || |||||| | ||
Sbjct 770 AGGATATCACTGGTAACCCGAGAGCTCTT-AGGAGG-TTGAGAACTGCCTGTGAGAGAGC 827
Query 931 GAAGAGAACTCTTTCTTCGACTGCTCAGACGACTATAGAGATTGACTCTCTT-TTTGAGG 989
||||||||||||||||| || || || ||||| || |||||||||| | || |||||||
Sbjct 828 AAAGAGAACTCTTTCTTCCACCGCGCAAACGACCATTGAGATTGACTTT-TTGTTTGAGG 886
Query 990 GTATTGATTTCTACACTACCA-TCACTCGTGCTAGGTTCGAGGAGCTCAACATGGATTTG 1048
| ||||||||||| | |||| |||||||||| || || || ||| | ||||||||| |
Sbjct 887 GAATTGATTTCTATTC-ACCAATCACTCGTGCAAGATTTGAAGAGATGAACATGGATCTC 945
Query 1049 TTTAGGAAGTGTATGGAGCCAGTGGAGAAGTGT-TTGAGGGATGCTAAGATGGACAAGAG 1107
|||||||| ||||||||||| || ||||||||| || | |||||||| ||| |||||||
Sbjct 946 TTTAGGAAATGTATGGAGCCTGTTGAGAAGTGTCTTC-GTGATGCTAACATGAACAAGAG 1004
Query 1108 CAGTGTTCATGATGTTGTTCTTGTTGGTGGCTCTACAAGGATTCCC-AAAGTGCAGCAGC 1166
|| | || |||||||| ||||| ||||| ||||| | || ||| ||||| || ||||
Sbjct 1005 CACAATCCACGATGTTGTCCTTGTCGGTGGTTCTACCCGTAT-CCCGAAAGTTCAACAGC 1063
Query 1167 TTTTGCAAGACTTCTTCAATGGGAAAGAGCTCTGTAAAAGC-ATTAACCCGGACGAGGCT 1225
|| | ||| | ||||| ||||| |||||||| || || | |||||||| || ||||||
Sbjct 1064 TTCTACAAAATTTCTTTAATGGTAAAGAGCTATGCAAGT-CTATTAACCCTGATGAGGCT 1122
Query 1226 GTTGCTTACGGAGCAGCTGTGCAAGCTGCAAT-CTTGAGCGGTGAAGGGAATGAGAAGGT 1284
||||| ||||| ||||| || |||||||| || || ||||||||||| || || |||||
Sbjct 1123 GTTGCATACGGTGCAGCGGTTCAAGCTGCGATTCTA-AGCGGTGAAGGAAACGAAAAGGT 1181
Query 1285 CCAGGA-CTTGTTACTT-CTTGATGTCACTCCTCTGTC-CTTGGGT-TTGGAAAC-TGCC 1339
||| || ||| | ||| ||||||||||| ||||| || ||||| | ||| |||| |
Sbjct 1182 CCAAGATCTTCT--CTTGCTTGATGTCACACCTCTCTCTCTTGG-TATTG-AAACCTTT- 1236
Query 1340 GGTGGTGTTATGACTGTTTTGATTCCGAGGAA-CACCACAATTCCGACCAAGAAAGAGCA 1398
|||||||| ||||| |||||| || | ||| ||| ||||| || || ||||| || ||
Sbjct 1237 GGTGGTGTCATGACCACTTTGAT-CCAAAGAAACACAACAATCCCAACTAAGAAGGAACA 1295
Query 1399 GATATTCTCTACCTATT-CAGACAACCAGCCCGGTGTACTGATCCAGGTCTACGAAGGAG 1457
| | ||| | || || |||||||||||||||| || ||||||| ||||||||||| |
Sbjct 1296 GGTCTTCACCAC-TAACGCAGACAACCAGCCCGGCGTGTTGATCCAAGTCTACGAAGGTG 1354
Query 1458 AGAGGGC-ACGAA-CAAAGGACAACAACCTT-TTGGGAAAGTTCGAGCTCAGTGGTATAC 1514
|||| || | ||| ||||| |||||||| | |||| ||| || ||||| ||| || |
Sbjct 1355 AGAGAGCTA-GAATCAAAG-ACAACAACATCCTTGGTAAATTT-GAGCTTTCTGGAATCC 1411
Query 1515 CACCTGCTCCACGAGGTGTACC-GCAGATTACTGTCTGTTTCGACATCGACGCCAATGGT 1573
| ||||||||||||||||| || | || |||||||||| |||||||| ||||||||||||
Sbjct 1412 CTCCTGCTCCACGAGGTGTCCCTG-AGTTTACTGTCTGCTTCGACATTGACGCCAATGGT 1470
Query 1574 ATCCTGAATGTGTCGGCTGAGGACAAGACGACTGGTCAGAAGAACAAGATCACAATCACA 1633
||||| ||||| ||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 1471 ATCCTCAATGTCTCGGCTGAGGACAAGACAACGGGACAAAAGAACAAGATCACAATCACC 1530
Query 1634 AACGACAAGGGAAGGT-TATC-AAAGGAAGAGATCGAGAAGATGGTACAAGAGGCAGAGA 1691
|| ||||| || | | | || |||| | || || ||||||||||| |||||||| ||||
Sbjct 1531 AATGACAAAGGTCG-TCTGTCTAAAG-ACGATATTGAGAAGATGGTGCAAGAGGCTGAGA 1588
Query 1692 AGTACAAGGCTGAGGATGAAGAACACAAGAAGAAGGTGGATGCAAAGAAC-GCTCTCGAG 1750
|||||||| ||||||||| || ||||||||||||||||| || |||||| | ||| |||
Sbjct 1589 AGTACAAGTATGAGGATGAGGAGCACAAGAAGAAGGTGGAAGCCAAGAACCG-TCTTGAG 1647
Query 1751 AACTATGCATACAACATGAGGAACACGATCAAG-GACGAGAAGATCGCATCTAAGCTTGA 1809
||||| || ||||||||||||||||| ||| | ||| | | | | | | | ||||||
Sbjct 1648 AACTACGCTTACAACATGAGGAACACAATCT-GTGAC-ATAGG-T-G-A-C-AAGCTT-- 1698
Query 1810 CGCAGCTG-A--CAAGAAGAAGATTGAGGA-TGCAATCGACCAAGCTATTG-AATGG-TT 1863
| |||||| | ||||||||||||||| || | | || || | || || | ||||| ||
Sbjct 1699 C-CAGCTGTAGACAAGAAGAAGATTGAAGACT-CTATTGAAGAGGCAAT-GCAATGGCTT 1755
Query 1864 AGATGGGAATCAACTGGCTGAGGCAGATGAGTTCGAGGATAAGATGAAGGAG 1915
||||| || ||| || ||||||| || ||||| || || ||||||||||||
Sbjct 1756 -GATGGTAACCAATTGACTGAGGCTGACGAGTTTGAAGACAAGATGAAGGAG 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85931592720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5