BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12610.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478619 jgi|Araly1|478619|fgenesh2_kg.3__1320__AT3G12610.1 2061 0.0
> Ahg478619 jgi|Araly1|478619|fgenesh2_kg.3__1320__AT3G12610.1
Length=1368
Score = 2061 bits (1116), Expect = 0.0
Identities = 1292/1376 (94%), Gaps = 16/1376 (1%)
Strand=Plus/Plus
Query 7 ATATCAAACATTTCTTTTAAAAATGAGAAAGTTGTTGGCATCGCCGTTTAGTTCATTACT 66
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATATCAAACATTTATTTTAAAAATGAGAAAGTTGTTAGCATCGCCGTTTAGTTCATTACT 60
Query 67 CGCCGTCGTTTTCATTTCCGTCATCTCCGTCGTCAGATGCTGCTCTCCTAAAGATCAGAC 126
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 61 CGCCGTAGTTTTCATTTCCGTCATCTCCGTCGTCCGATGCTGCTCTCCTGAAGATCAGAC 120
Query 127 GGCTCTCAATGCTTTCAAGTCGTCACTGAGCGAACCAAACCTCGGTATCTTCAACACTTG 186
||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 121 GGCTCTCAATGCTTTCAAGTCATCACTGAGCGAACCAAACCTAGGCATCTTTAACACTTG 180
Query 187 GTCTGAAAACACTGATTGTTGCAAGGAATGGTACGGTATCAGCTGCGATCCTGATTCGGG 246
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GTCTGAAAACACTGACTGTTGCAAGGAATGGTACGGTATTAGCTGCGATCCTGATTCGGG 240
Query 247 TCGGGTCACTGATATTTCTCTCCGGGGAGAATCTGAAGACGCCATTTTCCAAAAGGCAGG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGGTCACTGATATTTCTCTCCGGGGAGAATCTGAAGACGCCATTTTCCAAAAGGCAGG 300
Query 307 CCGGTCCGGTTATATGTCCGGTTCGATTGATCCAGCAGTTTGTGACTTAACCGCACTCAC 366
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 301 CCGGTCCGGTTATATGTCCGGTTCGATTGATCCATCGGTTTGTGACTTAACCGCACTCAC 360
Query 367 TTCCCTCGTTCTCGCCGACTGGAAAGGAATCACCGGAGAGATTCCTCCGTGCATTACTTC 426
||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 361 TTCCCTCGTCCTCGCCGACTGGAAAGGAATCACCGGAGAGATTCCTCCGTGCGTAACCTC 420
Query 427 CCTAGCTTCGCTCCGTATCCTCGATCTCGCCGGCAACAAGATCACCGG-GGAGATTCCCG 485
| ||||| ||||||||| |||| ||||||||||||||||||||||| || ||||||||
Sbjct 421 ATTGGCTTCTCTCCGTATCTTCGACCTCGCCGGCAACAAGATCACCGGAGG-GATTCCCG 479
Query 486 CGGAAATCGGCAAACTCTCGAAACTCGCTGTTTTAAACCTCGCCGAGAATCAAATGTCCG 545
||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||
Sbjct 480 CGGAAATCGGCAAACTCTCAAAACTCGCTGTTCTAAACCTCGCGGAGAATCAGATGTCCG 539
Query 546 GCGAGATTCCGGCGTCACTGACGTCACTCATCGAGTTGAAGCATCTTGAATTGACGGAAA 605
||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GCGAGATTCCGTCGTTGCTGACGTCACTCGTCGAGTTGAAGCATCTTGAATTGACGGAAA 599
Query 606 ATGGAATCACCGGCGTGATCCCGGCCGATTTCGGATCGTTGAAGATGTTGAGCAGAGTTT 665
| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 600 ACGGAATCACCGGCGTGATCCCGGCCGACTTCGGATCGTTGAAGATGCTGAGCAGAGTTT 659
Query 666 TACTGGGCCGTAACGAACTAACCGGGTCAATTCCAGAGTCGATCTCGGGTATGGAACGGT 725
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 660 TAATGGGCCGTAACGAGCTAACCGGGTCAATACCAGAGTCGATCTCGGGTATGGGACGGT 719
Query 726 TAGCGGATCTGGATCTATCCAAAAACCATATCGAAGGTCCGATACCCGAATGGATGGGTA 785
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TAGTGGATCTGGATCTATCCAGGAACCATATCGAAGGTCCGATACCCGAATGGATGGGTA 779
Query 786 ACATGAAGGTACTCTCACTTTTGAATCTCGATTGCAATTCGTTAACCGGTCCAATCCCCG 845
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 ACATGAAGGTACTCTCACTTTTGAATCTCGATTGCAATTCGTTAACCGGTTCAATCCCCG 839
Query 846 GTTCGCTTCTTAGCAATTCCGGTTTAGATGTTGCCAATTTGAGCCGAAATGCGTTGGAAG 905
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 840 GTTCGCTTCTTAGCAATTCCGGTTTAGATGTTGCGAATTTGAGCAGAAATGCGTTGGAAG 899
Query 906 GAACTATACCCGACGTTTTCGGGTCAAAAACGTATTTAGTTTCGCTTGATCTGTCACACA 965
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 900 GATCTATACCCGACGTTTTCGGGTCAAAAACGTATTTAGTTTCGCTTGATTTGTCCCACA 959
Query 966 ATAGTCTATCGGGTCGGATCCCGGATTCGTTGTCGTCAGCTAAGTTTGTGGGACATTTGG 1025
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATAATCTATCGGGTCGGATCCCGGATTCGTTGTCGTCAGCTAAGTTTGTGGGACATTTGG 1019
Query 1026 ATATTAGCCATAACAAGCTTTGTGGGCGTATTCCAACGGGTTTTCCTTTTGATCACCTTG 1085
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1020 ATATTAGCCATAACAAGCTTTGTGGGCGTATCCCAACGGGTTCTCCTTTTGATCACCTTG 1079
Query 1086 AAGCTACGTCGTTTAGTGACAACCAATGTCTCTGCGGTGGCCCTTTGACGACGTCATGTT 1145
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1080 AAGCCACGTCGTTTAGTGACAACCAATGTCTCTGCGGTGGCCCTTTGATGACGTTATGTT 1139
Query 1146 AATAACAAGGATATGGTTTCTGGTTTTACTGAACCGGGTTATTCTTTTTGCTGTTGCTCT 1205
|||||||||||||||||| | ||||||||||||||||||| | ||| |||||||||||||
Sbjct 1140 AATAACAAGGATATGGTTCC-GGTTTTACTGAACCGGGTT-T-CTTGTTGCTGTTGCTCT 1196
Query 1206 TGTTCGTTGTATCAAACTTGTGATATTTTGCTTTTCATTTCTTCGTCTTTCAGATTTTAG 1265
|||||| |||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 1197 TGTTCGCTGTATCAAACTTGTGATATTTTACTTTTCATTTA--C-T-TTTCAGATTTTAG 1252
Query 1266 TTTCTAA-AGCTAAGATATGTT--ACT---GGCAACGGACAGGTACACCGATCCAATATG 1319
||| | | |||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1253 TTT-TCACAGCTAATATATGTTCTACTACTGGCAACGGACAGGTACACCGATCCAATATG 1311
Query 1320 GTTTGCGGTCTATGTACAATGAATCCGGATGTAAAATCAAAAGCAATGTTATAGAA 1375
|||||||| |||||| ||||| |||| |||||| || |||||||| |||||||||
Sbjct 1312 CTTTGCGGTTTATGTAAAATGATTCCGAATGTAATATTAAAAGCAACGTTATAGAA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5