BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12630.1 Length=976 Score E Sequences producing significant alignments: (Bits) Value Ahg478622 jgi|Araly1|478622|fgenesh2_kg.3__1323__AT3G12630.1 1157 0.0 > Ahg478622 jgi|Araly1|478622|fgenesh2_kg.3__1323__AT3G12630.1 Length=917 Score = 1157 bits (626), Expect = 0.0 Identities = 861/962 (90%), Gaps = 65/962 (7%) Strand=Plus/Plus Query 35 ctatctctctctcctc-ATAATCGATCCGTAAACTCGCCGGAGGAGCAGGGAGATTCAAT 93 |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 CTATCTCTCTCTCCTCGA-AATCGATCCGTAAACTCGCCGGAGGGGCAGGGAGATTCAAT 59 Query 94 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACCGAGTTCAAAGTTCTCGAAACCTTG 153 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 60 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACGGAGTTCAAAGTTCTTGAAACCTTG 119 Query 154 ACG---ACAACAACAACGACGTTATGTACCAATAACTGCGGCGTTACAGCGAATCCTGCG 210 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 120 ACGACAACAACAACAACGACGCTATGTACCAATAACTGCGGCGTTACAGCGAATCCTTCG 179 Query 211 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCAGGTGTT 270 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 180 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCCGGTGTT 239 Query 271 GTTGAATCAGGTTCGATCTTGAAGAGATCGGCTAGATCTGTCAATCTTCGTTCGTCACCA 330 ||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 240 GTTGAATCAGGCTCGATCTTGAAGAGATCGGCGAGATCTGTCAATCTTCGGTCATCACCA 299 Query 331 GCTAAAGTCGTGATTCGTCCAAGAGAGATCGATGCGGTGAAGAAGAGAGATCAACAGATC 390 |||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||| Sbjct 300 GCTAAAGTCGTGATTCGTGCGAGAGAGATCGATGCGGTGAAGA-GAGA--TCAACAGATC 356 Query 391 GTAAACCGATGTTCTGGTTGTCGGAAGAAAGTTGGGTTGACCGGATTCAGGTGCCGATGC 450 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 357 GTAAACCGATGTTCTGGTTGTCGGAAGAAGGTTGGGTTGACCGGATTCAGGTGCCGATGC 416 Query 451 GGTGAGCTTTTCTGCTCAGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 510 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GGTGAGCTTTTCTGCTCCGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 476 Query 511 AAAACCGCTGGTCGTGAGGCGATCGCTAGAGAAAATCCGGTGGTCAAGGCTGCGAAAATG 570 |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 477 AAAACCGCCGGTCGTGAGGCGATCGCTAGGGAAAATCCGGTGGTCAAGGCGGCGAAGATG 536 Query 571 GTCAAAGTTTaaaaaattaaaaaTTCGATCTCAACCGTTGAAAAACTTGTGGTGGTTCAA 630 ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| | Sbjct 537 GTCAAAGTTTAAA---TTAAAA-TTCGATCTCAACCGTTGAAAA-CTTGTGGTGGTTCGA 591 Query 631 AAGCTCCGATCGG-A--A--G-A-GAGATTGGTCGGAGAGACATGGATTTGATTTGGTGA 683 | ||||||||| | | | | ||||| ||||||||| ||| ||||||| |||||| Sbjct 592 A-GCTCCGATCTATACGATCGGAAGAGAT-GGTCGGAGA--CATCGATTTGAATTGGTGC 647 Query 684 TGTGTTGTAAAAGAAGATCAGAGAGATTATTCCTCTCCTCAAATCAAAATCTGAACCTCA 743 |||||||||||||||||| | | | | | |||| | || | | | | | Sbjct 648 TGTGTTGTAAAAGAAGAT-A-A-ATCTGAA-CCTC-C---AATT-----T-T-----T-A 687 Query 744 AtttttttttttacgtttttttttCATCTTTTAATTTATATATTAGTGAATGATTATTAA 803 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 688 -TTTTTTTT---ACGTTTTT----CATCTTTTAATTTATATATTAGTGAATGATTATTAT 739 Query 804 TATTATTATTGTGTGGCTTACGGATTCATGAATTTGCTTCTTGATCATCGAGAAATGGTG 863 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 740 TATTATTATTGTGTGGCTTACGGATTCATGAATTTGCCTCTTGATCATCGAGAAATG-TG 798 Query 864 TATGTA--A---G--AGA--CGAAGGGGTTGTTTGGTAATTTAGGAACATGTCTTTCTGG 914 |||||| | | ||| ||||||||| | |||||||||||||||| ||||| ||||| Sbjct 799 TATGTAGGATATGGTAGAAACGAAGGGGTGGATTGGTAATTTAGGAACGTGTCTCTCTGG 858 Query 915 TTTCGTTTCGTTTCGTGTGGTAGATGTACTTATCACGATACTACTAGTCCATTGTGCGTC 974 ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 859 TTTCGTT-CGTTTCGTGTGGTAGATGTACTTATCACGG-A-TACTAGTCCATTGTGCGTC 915 Query 975 AC 976 || Sbjct 916 AC 917 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36254894067 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5