BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12700.1 Length=1543 Score E Sequences producing significant alignments: (Bits) Value Ahg478632 jgi|Araly1|478632|fgenesh2_kg.3__1333__AT3G12700.1 1941 0.0 > Ahg478632 jgi|Araly1|478632|fgenesh2_kg.3__1333__AT3G12700.1 Length=1515 Score = 1941 bits (1051), Expect = 0.0 Identities = 1379/1530 (90%), Gaps = 52/1530 (3%) Strand=Plus/Plus Query 47 GAGAGAAAGGCGTTTCATCAATGTATATAAATACTCTGTTTTGGAAACAGAACCCA-ACA 105 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | Sbjct 1 GAGAGAAAGGCGTTTCATCAATGTCTATAAATACTCTGTTTTGGAAACAGAACCCAGA-A 59 Query 106 GGGGACaaaaaaaaT-CA-AGAA-GAAAAAATGCAGAAGACATTGCTCTCATGTCTCATC 162 |||| |||||| || |||| || | || | | | || |||| ||||||||| Sbjct 60 GGGG-----AAAAATGCAGAGAATCAAGACAT-C-GCTCTC-GTG-TCTC-TGTCTCATC 109 Query 163 ACGACGCTCCTCCTAATCACCGTCGCAGATTCCATGAAAGACACCTCGGTGCGGCTAAAA 222 ||||||||||||||| |||||| ||||||||||| | ||||||| |||||||||||||| Sbjct 110 ACGACGCTCCTCCTACTCACCGCCGCAGATTCCACGGAAGACACGGCGGTGCGGCTAAAA 169 Query 223 TTAGCGCACAGGGACACTCTCTTGCCGAAACCTCTCAGCCGCATTGAGGACGTTATCGGC 282 ||||| ||| |||||||||||| |||||| ||||||||||||||||||||| ||||||| Sbjct 170 TTAGCACACCGGGACACTCTCTGGCCGAATCCTCTCAGCCGCATTGAGGACATTATCGGT 229 Query 283 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAGCGTAACTCCACAGTAGGAGTGAAA 342 ||||||||||||||||||||||||||||||||||| ||||| | || || |||||| ||| Sbjct 230 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAACGTAAGTTCAAAGGAGGAGTTAAA 289 Query 343 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTCACGGAGATTAGAGTT 402 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 290 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTAACGGAGGTTAGAGTT 349 Query 403 GGAACTCCGGCGAAGAAGTTCAGAGTGGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 462 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 350 GGAACTCCGGCGAAGAAGTTCAGAGTAGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 409 Query 463 AATTGTAGATACCGTGCGAGAGGC------AAA---GACAATCGGAGAGTGTTTAGAGCT 513 |||||||||||||||| ||||||| ||| || ||||||||||||||||||||| Sbjct 410 AATTGTAGATACCGTGGGAGAGGCAAAGGTAAAGTTGAGAATCGGAGAGTGTTTAGAGCT 469 Query 514 GACGAATCAAAGAGCTTTAAGACCGTTGGATGTTTAACTCAGACTTGTAAAGTTGATCTG 573 || ||||| ||||| ||||| || |||||||| || ||||||||||||||||||||| || Sbjct 470 GAAGAATCTAAGAGTTTTAAAACTGTTGGATGCTTCACTCAGACTTGTAAAGTTGATTTG 529 Query 574 ATGAATCTCTTCTCACTCACTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 633 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 530 ATGAATCTTTTCTCACTCTCTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 589 Query 634 AGATATGCAGATGGGTCAGCAGCACAAGGCGTATTCGCAAAGGAGACTATCACAGTTGGT 693 |||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||| Sbjct 590 AGATATGCGGATGGGTCAGCAGCGCAAGGCATATTCGCGAAGGAGACTATCACAGTTGGT 649 Query 694 CTCACTAATGGTCGTATGGCTAGACTCC-CTGGTCACCTCATTGGTTGTAGTAGTTCCTT 752 |||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || || Sbjct 650 CTCACTAATGGTCGTAAGGCTAGACTCCGC-GGTCTCCTCATTGGTTGTAGTAGCTCATT 708 Query 753 TACAGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 812 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 TAGTGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 768 Query 813 CTTCACTTCCACAGCCACTAGTCTCTATGGTGCCAAATTTTCATACTGCCTTGTTGACCA 872 || |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| || Sbjct 769 TTTTACTTCCACAGCCACTAGTCTCTTTGGTGCCAAATTTTCCTACTGCCTCGTTGATCA 828 Query 873 TCTTTCCAACAAAAACGTCTCCAACTATCTCATCTTCGG--------C-TCCTCCAGATC 923 || ||||||||||||||||||||||||||||||||||| | ||||||| || Sbjct 829 CCTCTCCAACAAAAACGTCTCCAACTATCTCATCTTCGGTTCTTCCTCTTCCTCCACCTC 888 Query 924 CACCAAAACCGCCTTCC--GACGAACCACTCCGCTTGATCTCACTCGCATCCCACCCTTC 981 ||||||||||||| || |||||||||| |||||||||||||||| ||||||||||||| Sbjct 889 CACCAAAACCGCC--CCGGGACGAACCACGCCGCTTGATCTCACTCTCATCCCACCCTTC 946 Query 982 TACGCAATCAACGTCATTGGAATCTCCCTCGGATACGACATGCTTGATATCCCCTCGCAA 1041 |||||||| |||||||||||||||||| ||||| || ||||||| ||||||||| ||||| Sbjct 947 TACGCAATAAACGTCATTGGAATCTCCATCGGAGACAACATGCTCGATATCCCCACGCAA 1006 Query 1042 GTATGGGACGCAACTTCCGGTGGTGGGACTATCTTAGACTCTGGAACCAGCCTCACGTTA 1101 ||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1007 GTATGGGACGCAACTACCGGTGGTGGGACTATCTTGGACTCAGGAACTAGCCTCACGTTA 1066 Query 1102 TTGGCTGACGCCGCGTACAAACAGGTGGTTACAGGGCTCGCACGCTACCTTGTTGAGTTG 1161 |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||| || Sbjct 1067 TTGGCTGAAGCCGCGTACAAACCGGTGGTTACGGGGCTCGCACGTTACCTTGTTGAGCTG 1126 Query 1162 AAAAGAGTCAAACCAGAAGGAGTACCAATAGAGTACTGTTTTAGTTTCACTTCCGGATTT 1221 ||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||| || Sbjct 1127 AAAAGAGTCAAGCCAGAAGGAATACCAATTGAGTACTGTTTTAGTTCCACGTCCGGGTTC 1186 Query 1222 AACGTGAGCAAGTTACCGCAGCTGACATTTCATTTAAAAGGCGGTGCACGATTTGAGCCA 1281 |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1187 AACGAGAGCAAGTTACCGCAGCTGACGTTTCATTTAAAAGGCGGTGCACGATTTGAGCCG 1246 Query 1282 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTGTGTCG 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1247 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTATGTCG 1306 Query 1342 GCTGGAACGCCGGCGACTAATGTGATCGGTAATATAATGCAGCAGAATTATTTGTGGGAG 1401 || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1307 GCGGGAACGCCGGCGACTAATGTGGTCGGGAATATAATGCAGCAGAATTATTTGTGGGAG 1366 Query 1402 TTTGATCTCATGGCCTCAACTTTGTCTTTTGCTCCCTCTGCTTGCACTTAGCTGTCTTGT 1461 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1367 TTTGATCTAATGGCCTCAACTTTGTCTTTTGCTCCCTCTACTTGCACTTAGCTGTCTTGT 1426 Query 1462 CCATCTCTCGT--GTTTATTATTA-TT-GATTTG-TTCGAATAT-T-TAT-T---GTTT- 1509 ||||||||| | ||||||||||| || |||| | || |||||| | ||| | |||| Sbjct 1427 CCATCTCTCTTCTGTTTATTATTACTTTGATT-GATTGGAATATATATATATATTGTTTT 1485 Query 1510 GCTAGTGAATGAATAAAAAACATGTTTGTT 1539 | ||||||| |||||||||||||||||||| Sbjct 1486 GTTAGTGAAAGAATAAAAAACATGTTTGTT 1515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57782901665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5