BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12920.1 Length=1437 Score E Sequences producing significant alignments: (Bits) Value Ahg478654 jgi|Araly1|478654|fgenesh2_kg.3__1355__AT3G12920.1 2128 0.0 > Ahg478654 jgi|Araly1|478654|fgenesh2_kg.3__1355__AT3G12920.1 Length=1446 Score = 2128 bits (1152), Expect = 0.0 Identities = 1366/1462 (93%), Gaps = 43/1462 (3%) Strand=Plus/Plus Query 1 GCTTTGATATTTGTTTTTTAGTTTCT--C-CT-TCTCTCTGCAG-AAACCGTAATTAAAA 55 |||||||||||||||||||||||||| | || ||||||||| | ||||||||||| ||| Sbjct 1 GCTTTGATATTTGTTTTTTAGTTTCTCCCTCTATCTCTCTGC-GAAAACCGTAATT-AAA 58 Query 56 ACCCCCCAC-A-AC-T--TCTTCAACATAACGTCTTCTTCTTCCATCTTTCGTTGCATTC 110 |||||||| | || | ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 59 CCCCCCCACAACACATCCTCTTCAACATAACTTCTTCTTCTTCCATCTTTCGTTGCTTTC 118 Query 111 ACGTTTTTAAAGGTTCTCTGAATCA-CTCCATTAAAAATAGCTTTGAACAAGTTTTC-TC 168 ||||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||| | Sbjct 119 ACGTTTTTAGAGGTTCTCTGAATCACCCCCATT-AAAATAGCTTTGAACGAGTTTTCAT- 176 Query 169 AATAGTCAACAAAAACAATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCA 228 |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 177 AATAGTCAAC--AAACAATGGCCGTTGAAGCTCACCATCTTAATCCTCTGTTTTCTTCCA 234 Query 229 ACAGAGAAATGATTCATCCCGTTGAAGCAAGCGG-TGTAGTCTATAACACCCAGATGAGA 287 |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| Sbjct 235 ACAGAGAAATGATTCATCCCGTTGAAGCAAACGGCT-TAGTCTATAACACCCAGATGAGA 293 Query 288 TACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCA 347 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct 294 TACGGCACCGTTCCGACGTTTAACCCTACTGTAGAATGTCAAACTTCTCTGTTTAATCCA 353 Query 348 ATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAG 407 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 354 ATCTACAACATCTCACCAGTTGATGGTTTGGTTCATCAATCCATGAAACCAACGATACAA 413 Query 408 TCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTG 467 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||| Sbjct 414 TCCGTTGATAGTTCTGTCACATTCAACAGCG---AGAA---CGATTTTCTTCGTCCTGTG 467 Query 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAA 527 ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| Sbjct 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCTGTTGTTTTAAATCCTTCCGCTTATATGCAA 527 Query 528 ATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTT 587 | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 528 AGCCAGAAAAATCCCACGGATCCTCTCATGTTCCTTGGCCAAGACTTGTCTTCTAACGTC 587 Query 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647 Query 648 GAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGT 707 || |||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 648 GAAATTGAAGAGAAGAGAAAATCACAAGGGAGGAGGATAGTGGAAGCCGTGGAACAAGGT 707 Query 708 TTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTC 767 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 708 TTGATGAAGACACTAAGAGCCAAAGACGAAGAGATAAATCACATCGGGAAACTAAACCTA 767 Query 768 TTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 768 TTTCTAGAAGAGAAGGTCAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827 Query 828 CAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCC 887 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||| Sbjct 828 CAGTCTAATGAAGCCACCGTAAACGCCCTCCGTTCCAACTTACAACAAGTTCTCGCTGCC 887 Query 888 GTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGC 947 || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 888 GTTGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCAGACGACGCGCAGTCTTGTTGC 947 Query 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAG 1007 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAGCGGTGGAAGTTAGCGGGAGAGGCGCAG 1007 Query 1008 GATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 GATACGAAAAAGATGCGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067 Query 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCA 1127 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTACTGTGTGTGGTTCTTCA 1127 Query 1128 CTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCC 1187 |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1128 CTCAACACTTGTCCCATTTGTAAATCTCCAAAGAACGCTAGTCTACATGTTAATCTTTCC 1187 Query 1188 TCTTAG-ACCTAACC-AATACCAGTAAAAT-GTAAATGCCCCCaaaaaaaGTAAATAGTA 1244 |||||| | ||||| |||||||||||||| ||| ||| ||| ||||||||||||||||| Sbjct 1188 TCTTAGTA--TAACCCAATACCAGTAAAATTGTATATGTCCC-AAAAAAAGTAAATAGTA 1244 Query 1245 GACAAAAGTTTCTTGGTT-AAA-AA--CTGTTCATTCttttttt-----GT-TT-GGATG 1293 || ||||||| ||||||| ||| || ||||||||||||||||| || || |||| Sbjct 1245 GAAAAAAGTTCCTTGGTTGAAAGAAAACTGTTCATTCTTTTTTTCTCTCGTCTTTGGATT 1304 Query 1294 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1305 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1364 Query 1354 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1424 Query 1414 TGTCATTTCCCATCTTTGTATG 1435 |||||||||||||||||||||| Sbjct 1425 TGTCATTTCCCATCTTTGTATG 1446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53745335695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5