BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13040.1 Length=1881 Score E Sequences producing significant alignments: (Bits) Value Ahg478672 jgi|Araly1|478672|fgenesh2_kg.3__1373__AT3G13040.1 2586 0.0 Ahg914735 jgi|Araly1|914735|Al_scaffold_0001_4989 313 4e-84 > Ahg478672 jgi|Araly1|478672|fgenesh2_kg.3__1373__AT3G13040.1 Length=1885 Score = 2586 bits (1400), Expect = 0.0 Identities = 1735/1895 (92%), Gaps = 30/1895 (2%) Strand=Plus/Plus Query 7 CGACGGCGATTTCGTAGCGAAATCTCCGTCTCCTTCCTTTAACCCCAtctcttcttcttc 66 |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| Sbjct 1 CGACGGCGATTTCGTAGCCAAATCTTCGTCTTCTTCCTTTAACCCCATCTCTTCTTCTTC 60 Query 67 -t--tcttTTGCTTTCTCATTCGAATTAACTTCATCTCTTTGATGGGATTCAGCTTGTTT 123 | ||||||||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 61 TTCGTCTTTTGCTTTCTCATTCGGATTAACTTCATCTCTTTGATGGGATTTTGCGTGTTT 120 Query 124 TCTCAAATGTTAGTT-TTTTCTTCATTTGTTATGCAGCAAGTATTAAAAAGGTGAAGACT 182 ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 121 TCTCAGATGCTAGTTATTTTCTTCATTTGTTATGCAGCAAGTA-TAAAAAGTTGAAGACT 179 Query 183 TTATCATCCTCTCAGCGGCTTGGATGCTAACTGCAAACTAATGGGGGATCTTGTCAAGAG 242 |||||||||||||||||||||| | || |||| |||||| |||| ||||||| ||||||| Sbjct 180 TTATCATCCTCTCAGCGGCTTGAAGGCCAACTCCAAACTTATGGCGGATCTTATCAAGAG 239 Query 243 ACAGTTTTGATTGTTGATGTACATCAAAGCAATCATGAACAGACACAGGCTTCTCTCAGC 302 |||||||| |||||||||| |||||||||||||||||||||||| || ||| | ||| | Sbjct 240 TCAGTTTTGTTTGTTGATGTTCATCAAAGCAATCATGAACAGACATAGCCTTGTGTCAAC 299 Query 303 GGCAACAGATGAATGCAATAAAAAACTTGGTCAAGCTTGCTCTTCTTCTTTATCTCCAGT 362 |||||||||||||||||| ||| | |||||||| ||||||| ||||| ||||||||| Sbjct 300 GGCAACAGATGAATGCAACAAAGGAGTTGGTCAAACTTGCTCGACTTCTCCATCTCCAGT 359 Query 363 CCATAACTTTCTGAATGTCCAGCCAGAACACCGGAAAACTCCTTTCATAAGGTCACAATC 422 |||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 360 CCATAACTTTCTCAATGTCCAGCCAGAACACCGGAAATCTCCCTTCATAAGATCACAATC 419 Query 423 TCCAGATTCACCTGGTCAGCTATGGCCAAAGAATAGTTCTCAGAGCACCTTCTCTCGGTC 482 |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 420 TCCAGATTCAACTGGTCAGCTATGGCCAAAGAATATTTCTCAGAGCACTTTCTCTCGCTC 479 Query 483 TTCCACCTTTTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAGAAACA 542 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 TTCCACCTTCTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAAAAACA 539 Query 543 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 599 Query 603 TGTGGAGTCTGCAAGATCTCCATCTATTTTCACTGAGGATTTGGGCAATCAATGTGATGG 662 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 600 TGTGGAGTCTGCAAGATCTCCATCTATTTTCAGTGAAGATTTGGGCAATCAATGTGATGG 659 Query 663 AGGCAACTCCGGGTCGCTTCTCAAAGACTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 722 || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 660 AGACAACTCCGGCTCGCTTCTCAAAGATTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 719 Query 723 TGGCGATTTTCATGATTTTGGCTGTTCGAATGACAGCTATTGCTTATCAGATCAAATGGA 782 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 720 TGGCGGTTTTCATGATTTTGGCTGTTCGAATGACAGCTTTTGCTTATCAGATCAAATGGA 779 Query 783 ATTACAGTTCCTGTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACTCCCAG 842 || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 780 GTTGCAGTTCCTCTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACCCCCAG 839 Query 843 GCTTGATGAGATCTATGAAACGCCATTGG---CGTCAAATCCAGTGACGAGATTGAGTCC 899 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 840 GCTTGATGAGATCTATGAAACGCCATTGGCTTCGTCAAATCCAGTGACGAGATTGAGTCC 899 Query 900 AAGCCAAAGCTGTGTTCCTGGAGCAATGTCTGTAGACGTAGTTTCATCTCACCCTTCTCC 959 |||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct 900 AAGCCAAACCTGTGTTGCTGGAGCAATGTCTATAGACGTAGTTTCATCGCACCCTTCTCC 959 Query 960 GGGATCAGCAGCCAATCAAAAGTCGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 960 GGGATCAGCAGCCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019 Query 1020 TGTAAAGGCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTAAGAA 1079 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1020 TGTTAAGTCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTATGAA 1079 Query 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139 Query 1140 ACTAGCCAAGTATATGCCagagaaaaaagaagagaaaaggactgataactcagaagaaaa 1199 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 1140 ACTAGCCAAGTATATGCCAGAGAAAAAAGAAGAGAAAAAGAATGAAAACTCAGAAGAAAA 1199 Query 1200 gaaaCTGGCTTTGAGTAAGAGTGAAGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1200 GAAACTGGCTTTGAGTAACAGTGATGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259 Query 1260 TGAAGCACTGCGTATGCAGATGGAAGTTCAGAAGCAATTGCATGAACAGCTGGAGGTGCA 1319 |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1260 TGAAGCTCTGCGTATGCAGATGGAAGTTCAGAAGCAACTGCATGAACAGCTCGAGGTGCA 1319 Query 1320 ACGGGTGCTTCAGCTACGAATTGAAGAGCATGCTAAATACTTGGAAAAGATGTTGGAAGA 1379 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1320 ACGGGTACTTCAGCTACGAATTGAAGAGCACGCTAAATACTTGGAAAAGATGTTGGAAGA 1379 Query 1380 ACAACGCAAAACAGGAAGGTGGATTT---CTTCTTCTTCGCAGACAGTGTTATCACCTAG 1436 |||||||||||| |||| || ||||| |||||||||| |||||||| ||||||||||| Sbjct 1380 ACAACGCAAAACCGGAAAGTTGATTTGTTCTTCTTCTTCTCAGACAGTATTATCACCTAG 1439 Query 1437 TGATGACTCTATACCAGATTCTCAAAACATGTCCAAAACCAAAGCATCTTCGCCTCAGCC 1496 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1440 TGATGACTCTATATCAGATTCTCAAAACATGTCCAAAACCGAAGCATCTTCGCCTCAGCG 1499 Query 1497 GCCATTACCTGCAGAGAACAAAGCGTCGGAAACCGAAGACGATAAATGTGAAAGCCCTCA 1556 | || | ||||| |||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 1500 GTCAACATCTGCAAAGAACAAAGCTTCTGAAACTGAAGACGATAAATGTGAAAGCCCTCA 1559 Query 1557 GAAACGTCGCAGGCTTGAGAACATAGCTGAATCTGAAGATCCTAAGAGGTAGTAAGATTC 1616 |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | Sbjct 1560 AAAACGTCGCAGGCTTGAGAACAAAGCTGAATCTGAAGATCCTAAGAGGTAGGAAGATGC 1619 Query 1617 TTCAAGTATGTAAATATGGTCCGTTTTGTGTAATTTAGTGAGAGAGA-GA-G-TG-TCAC 1672 |||||||||||||||||||| ||||||||| || | |||||||||| | | || ||| Sbjct 1620 TTCAAGTATGTAAATATGGTATGTTTTGTGTGATATGGTGAGAGAGATGGTGGTGATCAT 1679 Query 1673 TCAAAATATATGTTTGTAATGTAGATCTTTGTCAGAAACGTGTAAACTTATTACGGATAT 1732 ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| || | Sbjct 1680 TCAAAGTATATGTTTGTAATGTAGATCTTTGTCGGAAACGTGTAAACGTATTACGAATCT 1739 Query 1733 TGAGGATGT-CACTGCCTTCA-C-TGTGA-GAAAAGAATCTTTAATTC-TGTGTTTGTGT 1787 ||||||||| | || | | | | | ||| | | |||| | ||| | || ||| ||| Sbjct 1740 TGAGGATGTTC-CTTTCATAAACATATGATGCATAGAACCCGAAATCCCTGA-TTT-TGT 1796 Query 1788 GTGTATAGGTCACTGGTTAGTGAGAAAACTGAAG-AGTTCACTTTCCAATGTTTATATAC 1846 | ||| | ||||| ||||||| ||||| ||||| | ||||||||||||| || ||| Sbjct 1797 GAGTAGA--TCACTTGTTAGTGTGAAAAGTGAAGGA-TTCACTTTCCAATCTTCATAGG- 1852 Query 1847 AAGTTTGCTAATATCAAACGTGGAAGTCACTTTCC 1881 |||||||||||||||| ||||| |||||||||| Sbjct 1853 --GTTTGCTAATATCAAAAGTGGATGTCACTTTCC 1885 > Ahg914735 jgi|Araly1|914735|Al_scaffold_0001_4989 Length=597 Score = 313 bits (169), Expect = 4e-84 Identities = 287/343 (84%), Gaps = 12/343 (3%) Strand=Plus/Plus Query 1053 AAAGGCCACTCCAAAGGCTGTTAAGAAGCTC-ATGAATGTTGAGGGCTTGACGATCTATC 1111 |||||| ||||| |||||||||| ||||| | |||||||||||| | ||||| ||||||| Sbjct 168 AAAGGCAACTCCTAAGGCTGTTATGAAGC-CAATGAATGTTGAGAGTTTGACCATCTATC 226 Query 1112 ATGTAAAAAGCCACTTGCAGAAGTATAGACTAGCCAAGTATATGCCagagaaaaaagaag 1171 | || |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 227 AAGTCAAAAGCCATTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAG 286 Query 1172 agaa-aaggactgataactcagaagaaaagaaaCTGGCTTTGAGTAAGAGTGAAGCTGAC 1230 |||| || | || |||||| ||||| ||||||| |||| || || | |||||| || Sbjct 287 AGAAGAAAAA-TGGTAACTCGGAAGAGAAGAAACCAGCTTCGAATACCAATGAAGCAGAT 345 Query 1231 GAGAAGAA-GAAAGGGGCCATACAATTAACTGAAGCACTGCGTATGCAGATGGAAGTTCA 1289 | | |||| |||||| |||||||| ||||| ||||| || ||||||||||||||||| || Sbjct 346 G-GTAGAAAGAAAGGAGCCATACAGTTAACAGAAGCTCTACGTATGCAGATGGAAGTACA 404 Query 1290 GAAGCAATTGCATGAACAGCTGGAGGTGCA-ACGGGTG-CTTCAGCTACGAATTGAAGAG 1347 ||||||||||||||||||||| ||||| || | || | ||||| |||| || || || Sbjct 405 GAAGCAATTGCATGAACAGCTTGAGGTACAGA-GG-TCACTTCAATTACGGATAGA-GAA 461 Query 1348 CATGCTAAATACTTGGAAAAGATGTTGGAAGAACAACGCAAAA 1390 ||||||||||||||||| ||||| ||||||||| | || |||| Sbjct 462 CATGCTAAATACTTGGAGAAGATCTTGGAAGAAGAGCG-AAAA 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70657404475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5