BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13065.1 Length=2638 Score E Sequences producing significant alignments: (Bits) Value Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 3286 0.0 > Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 Length=3279 Score = 3286 bits (1779), Expect = 0.0 Identities = 1909/1973 (97%), Gaps = 4/1973 (0%) Strand=Plus/Plus Query 233 GTATCTGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTCAAAGGCTGG 292 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1309 GTATCGGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTTAAAGGATGG 1368 Query 293 TCTTCAAGCGGAGGCGATCCTTGTGGCGATTCGTGGGATGGCATTACTTGCAAAGGCTCT 352 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 1369 TCTTCAAGCGGAGGCGATCCTTGTGGTGATTCATGGGATGGCATTACATGCAAAGGCTCT 1428 Query 353 TCTGTTACTGAAATAAAAGTATCTGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 412 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1429 TCTGTTACTGAAATAAAAGTATCGGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 1488 Query 413 GGAAACTTGAAATCGCTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 472 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1489 GGAAACTTGAAATCACTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 1548 Query 473 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1549 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 1608 Query 533 AATGTGCCATATTCGGTGTCTCTCATGAACGACCTCAGTTACCTAAACCTTGGCCGTAAC 592 ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||| Sbjct 1609 AATGTGCCATACTCGGTATCTCTCATGAATGATCTCAGTTACCTAAACCTTGGCCGTAAC 1668 Query 593 AACCTCAATGGTGAACTCAGTGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 652 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1669 AACCTCAATGGTGAACTCAGCGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 1728 Query 653 CTTTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGTCTT 712 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1729 CTGTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGCCTT 1788 Query 713 AAAACACTGCATTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 772 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1789 AAAACACTGCACTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 1848 Query 773 CCTCAGATTGATGATGTAAACGTAGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 832 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1849 CCTCAGATTGATGATGTAAACGTCGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 1908 Query 833 TTGAAGAATATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 892 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1909 TTGAAGAACATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 1968 Query 893 TCACCACCTCCGGGAACCCGTCACATAGACAGAAACTCATCAGGAGGCGGTGGAGGAAGC 952 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1969 TCACCACCTCCCGGAACCCGTCACATAGACAGAAACTCATCGGGAGGCGGTGGAGGAAGC 2028 Query 953 AGCAAGGCTCTGACACTAGGAGTTATAATAGCGGTGTCTTCTATAGGTGGACTCATTTTA 1012 ||||||||||||||||| |||||||||||||| || |||| ||||||||||||||||||| Sbjct 2029 AGCAAGGCTCTGACACTTGGAGTTATAATAGCAGTTTCTTGTATAGGTGGACTCATTTTA 2088 Query 1013 TTTGCAGG-GTTGATTGCATTGATTTCTCGAAGAAAGAACTCTAATGATTCTTCTCACTT 1071 |||||||| | ||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 2089 TTTGCAGGAG-TGATTGCATTGTTTTCTCGAAGAAAGAACTCTCATCATTCTTCTCACTT 2147 Query 1072 TTTCGACGACGAGAAAGGAACCAACCGAAGCAAGCCACTCTTCACACCACAATCCTCTCA 1131 ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 2148 TTTCGACGAAGAGAAAGGATCCAACCGAAACAAGCCACTCTTCACACCACAATCCTCTCA 2207 Query 1132 GATGCTTCAATTCGATAATATGGAAGAATTCAAAAACCAGAAGACAGTTGATTCTAATAC 1191 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2208 GATGCTTCAATTCGATAATATGGAAGAATTCAAAGGCCAGAAGACAGTTGATTCTAATAC 2267 Query 1192 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2268 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 2327 Query 1252 TACTTTTCATCTCATACCTTCTACCCAAGTGGCTGCTACCCCTGACCGTTCCTCCACCTC 1311 |||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||| | Sbjct 2328 TACTTTTCATCTCATACCTTCTACGCAAGTGGCTGCAACCCCTGATCATTCCTCCACC-C 2386 Query 1312 CC-AAGACTCTCCTGATACACGCGGTGTGAAAGCGTTTTCACTAGCGGATTTGCAGAATA 1370 || || ||||||||||||||||||||||||| | |||||||||| |||||||||||||| Sbjct 2387 CCGAAAACTCTCCTGATACACGCGGTGTGAAGGTGTTTTCACTAACGGATTTGCAGAATT 2446 Query 1371 CCGCGTCTTGTTTCTCGCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 1430 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2447 CCGCGTCTTGTTTCTCTCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 2506 Query 1431 AAGCTAAATTTCAGGATGGAAGGAAATTTGCAGTCAAAGAGATTGATTCTTCTCTGTTAG 1490 ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 2507 AAGCTAAATTTCAAGATGGAAGGAAATATGCAGTCAAAGAGATTGATTCTTCACTGTTAG 2566 Query 1491 GAAAAGGCAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 1550 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2567 GAAAAGGAAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 2626 Query 1551 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGAAATATGCTTGTTTATG 1610 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2627 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGGAATATGCTTGTTTATG 2686 Query 1611 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 1670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2687 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 2746 Query 1671 CATTGACGTGGAACACCAGAATCCGAATCGCTCTCGGAACTGCTAAAGCTATAGAGTACC 1730 |||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| Sbjct 2747 CATTAACGTGGAACACCAGAGTCCGAATCGCTCTTGGAACTGCTCAAGCTATAGAGTACC 2806 Query 1731 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCAAACATTTTAC 1790 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2807 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCGAACATTTTAC 2866 Query 1791 TTGATAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 1850 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2867 TCGACAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 2926 Query 1851 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCAGAATGCACAGATCCCTCCGCTTACA 1910 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 2927 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCGGAATGCACAGATCCCTCGGCTTACA 2986 Query 1911 CACAAAAGAGCGACGTGTACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 1970 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2987 CACAAAAGAGCGACGTATACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 3046 Query 1971 AGCCTTATGACAGTGGGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 2030 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3047 CGCCTTATGACAGTGAGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 3106 Query 2031 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 2090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3107 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 3166 Query 2091 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 2150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3167 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 3226 Query 2151 GACTTAGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 2203 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3227 GACTTCGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 3279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99491719940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5