BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13120.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value Ahg478688 jgi|Araly1|478688|fgenesh2_kg.3__1389__AT3G13120.1 1387 0.0 Ahg359796 jgi|Araly1|359796|fgenesh1_pg.C_scaffold_1061000001 532 1e-150 > Ahg478688 jgi|Araly1|478688|fgenesh2_kg.3__1389__AT3G13120.1 Length=946 Score = 1387 bits (751), Expect = 0.0 Identities = 887/950 (93%), Gaps = 19/950 (2%) Strand=Plus/Plus Query 1 ATGGATAACCCTCaagaagaagctgctgaagaagaaacctcatccttcgaacgtt-a-a- 57 ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||| | | Sbjct 1 ATGGATAACCCTCGAGACGAAACAGCTGAAGAAGAAACCTCATCCTTCGAACGTTAAGAG 60 Query 58 g-ag--gaagaagaataagagaaATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTT 114 | || ||||||||| ||||||||||||||| | | || ||||||||| |||||||| | Sbjct 61 GAAGAAGAAGAAGAAGAAGAGAAATCGATTC-TTG-TTCAGGAAAATTCCATGGCGGTGT 118 Query 115 CTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTA 174 |||||||||| ||||||||||| || || |||| |||||||||||||||||||||||||| Sbjct 119 CTACTGTATCTTCGTTTCTATTACCCTCCTTCGTCATTCCAAGCTCTTCGCCTTCTTCTA 178 Query 175 CCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCG 234 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 179 CCAGACTCAAAGTCTCTCTGCTACCTTCATCGTCTACCCATGGCGGCCTTAGTTCCTGCG 238 Query 235 TCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATC 294 ||||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||||||| Sbjct 239 TCCTTACTAAACCCTCCGTTTCTCTTACGAAGGTCTTCGCGGTTCCCGAAACCCTAGATC 298 Query 295 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTG 354 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 299 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCCTCCATCAGTG 358 Query 355 TAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 414 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TAGATGCTGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 418 Query 415 TGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAA 474 ||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| Sbjct 419 TGCCTCTTATTGAGGACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAA 478 Query 475 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTC 534 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 479 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTC 538 Query 535 CTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTG 594 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 539 CTCACGTACACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTG 598 Query 595 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 658 Query 655 GTGTCGATGTGGAAGTGAAGCTCTGAAGAA-GAAGCGTAACTACAATGATGTGATGGGCA 713 |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 659 GTGTAGATGTGGAAGTGAAGCTCTGAAGAACGA-GCGTAACTACAATGATGTGATGGGCA 717 Query 714 CTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCC 773 |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 718 CTTTTGCATTAAATGAACAGACTGTTTCAGATCAACTACATTTCTTAGAACCGGTAAGCC 777 Query 774 TTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTT 833 ||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 778 TTGTATCATCTTTTT-GAGAACCTCTGTAATGAAAATGTAAGTTGTATGATCTGGTCCTT 836 Query 834 GG-AATCT---A-TCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 888 | || | | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 837 AGCAAAGTTGGAATCTTTAGCGATGTTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 896 Query 889 GCAAGTTCAAAGGAATTT---GTTTTTGTTTTACTAATTGTTATGCAGTT 935 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 897 GCAAGTTCAAAGGAATTTTTTGTTTTTGTTTTACTAATTGTTATGCAGTT 946 > Ahg359796 jgi|Araly1|359796|fgenesh1_pg.C_scaffold_1061000001 Length=312 Score = 532 bits (288), Expect = 1e-150 Identities = 304/312 (97%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 369 ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG 60 Query 429 GACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCT 488 ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| Sbjct 61 GACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAAAGACGATGGGTCCT 120 Query 489 GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAG 548 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 121 GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTCCTCACGTACACAAG 180 Query 549 GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCG 608 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTGATATTCTCTACCCG 240 Query 609 ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAA 668 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAA 300 Query 669 GTGAAGCTCTGA 680 |||||||||||| Sbjct 301 GTGAAGCTCTGA 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38199162834 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5