BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13225.2
Length=2895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478706 jgi|Araly1|478706|fgenesh2_kg.3__1407__AT3G13225.1 3969 0.0
> Ahg478706 jgi|Araly1|478706|fgenesh2_kg.3__1407__AT3G13225.1
Length=3285
Score = 3969 bits (2149), Expect = 0.0
Identities = 2478/2637 (94%), Gaps = 21/2637 (1%)
Strand=Plus/Plus
Query 220 TTCT-TCTTCAGGTCAGAAAACAGAAAATCCTTTGCTTTTACTTGGGCAGTATAGTGATG 278
|||| | ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 640 TTCTATTTTCAGGTCAGAAAACAGGAAACCCTTTGCTTTTACTTGGCCAGTATAGTGATG 699
Query 279 ATGAGGTGGAAGAAGATTCGGATAAGAAGGCAGATGATACCTCTGCAGATAGTTTCTTAG 338
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||
Sbjct 700 ATGAGGTGGAAGAAGATTCGGATAAGAAAGCAGATGATGCCTCTGCAGATAGTTCCTTAA 759
Query 339 CCAATAAAAATGAGCAGGTTGATGGATTAATTCAAGGAGGACACAAAGATACGAATATCA 398
||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct 760 CCAATAAAAATGAGCAGGTCGATGGATTAATTCAAGAAGGACACAAAGATACAAATATCA 819
Query 399 AATCAGGTGCAGTCACCACCACTATGCAGATGGCTGATCAACAGCAGACAGGGGAGAATT 458
||||||||||||| |||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 820 AATCAGGTGCAGTTACCA-CA--ATGCAGATGGCTGACCAACAGCAGGCAGGGGAGAATT 876
Query 459 CTTCTGCTCTTGATTCTAGAGCTGAAGTAGAAACTGGTTATACCACAGTGAGTAACTCAA 518
||||||| ||||||| ||||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 877 CTTCTGCACTTGATTATAGAGCTGAAGGAGAAAGTGGTTTTGTCACAGTGAGTAACTCAA 936
Query 519 CAA-CATTGGATGGACTAAACAAGCAGACAGTTCCCTCAGTTCAAGCATCTGGCAGTGTG 577
||| | |||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 937 CAATC-TTGGATGGACTAAATAAGCAGACAGATCCCTCAGTTCAAGCATCTGGCAGCGTG 995
Query 578 TCTTTGGAGCACCAGGCTCCCACAGATGTTACGTCGCAGTGGAAGATGATTCTGCATGAG 637
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 996 TCTTTGGAGCACCAGGCTCCCACAGATGTTACTTCGCAGTGGAAGATGATTTTGCATGAG 1055
Query 638 GAGAGCAATCAGTATTATTACTGGAATACAGAAACTGGAGAAACTTCGTGGG-AATTGCC 696
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 1056 GAGAGCAATCAGTATTACTACTGGAATACAGAAACTGGGGAAACTTCGTGGGAAATT-CC 1114
Query 697 TACAGTTTTGACTCAAACTACCTTTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 756
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1115 TACAGTTTTGACTCAAACTGCCTGTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 1174
Query 757 GGTTACAGATGCTTCCACCTTGATTTCAAGTGTTGAACCAAGCTATTTCGTACCCGTGCA 816
||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1175 GGTTACAGATGAGTCCACATTGATTTCTGGTGTTGAACCAAGCTATTTCCTACCCGTGCA 1234
Query 817 AAATAGTTTCACAGGAACTGACTATTCTACTTTTCCAACTGTTGAGCTGGATGGGAGAAA 876
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1235 AAATAGTTTCACAGGAACTGACTATTCGACTTTTCCAACTGTTGAGCTGGATGAGAGAAA 1294
Query 877 CAAAAGTGAAGATCTATATGTCAAAAGTTTAGGAACTGATGGTCATCAAGTTGAATGTCG 936
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1295 CAAAAATGAAGATCTATATGTCAAAAGTTTAGGAACAGATGGTCATCAAGTTGAATGTCG 1354
Query 937 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 1414
Query 997 GCATACTTATTTTGATGCAGGAGCTGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1056
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1415 GCATACTAATTTTGATGCAGGAGCGGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1474
Query 1057 CGAAAGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1116
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 CGAAGGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1534
Query 1117 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1594
Query 1177 CATATTGGACACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 CATATTGGATACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1654
Query 1237 GCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1714
Query 1297 AC---CAGAAACTAACAAAAGCCCTCCCAAAGAAAAGTTGGTGGCAGATGCTAATACAGA 1353
| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1715 AATTGCAGAAACTAACAAAAGCCCTCCCGAAGAAAAGTTGGTAGCAGATGCTAATACAGA 1774
Query 1354 GAGTGAGTCCGAGGACAGTGAGAGAGATGGAGAGTTAGCTCAATCTGGAAAATCTCTTCA 1413
|||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1775 GAGTGAATCCGAGGGCAGTGAGAGAGATGGAGAGCTAGCTCTATCTGGAAAATCTCTTCA 1834
Query 1414 TTCAGATGAATCAGCTGATGGGAGCGGCGATGGATCTCCTAAACACTCCCCAAATCATCC 1473
|||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1835 TTCAGATGGATCAGCTGATGTGATCGGCGATGGATCTCCTAAACACTCCCCAAGTCATCC 1894
Query 1474 AGCTGGGCAGTCTGATATTATTCCTTCAACTGAGATGCTTCAGAAGGCCGGCTCCCCAGA 1533
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1895 AGCTGGGCAGTCTGATATTACTCCTTCAACTGAGATGCTTCAGAAGGCTGGCTCCCCAGA 1954
Query 1534 TGTGGAAGATGTTGACATGGATGTGGATATGGAAGTTGAAGAATCAGTTCCAGTGTCTTC 1593
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1955 TGTGGAAGATATTGACATGGATGTGGATATGGAGGTTGAAGAATCAGTTCCAGTGTCTTC 2014
Query 1594 TGTTCAAGTGATAGACGCTTCTGATGGTAAGATGTTCAGTCAAACAGAGCCATCCAACCT 1653
||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2015 TGTTCAAGTGATAGATACTTCTGATGGTAAGATATTCAGCCAAACAGAGCCATCCAACCT 2074
Query 1654 TCATACAGATGTTCCACCACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGAGAG 1713
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2075 CCATGCAGATGTTCCACTACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGACAG 2134
Query 1714 TGAAGATGTTCCTCCACCGCCACCAGACAGTTATAGCGAACCAATTCCTCCACCACCTGA 1773
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 2135 TGAAGATGTTCCTCCGCCGCCACTAGACAGTTATAGCGAACCAATTCCCCCACCACCTGA 2194
Query 1774 CAATGGCCATGTCGCTTCATCTTTGTCCAGTGACTCTCTCGGAGTTCCCTATACCGTACC 1833
||||||||| || ||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 2195 AAATGGCCATTTCCCTTCATCTTTGTCCAGTGATTCTCTTGGAGTTCCCTATACTGTACC 2254
Query 1834 TCAATCATATATGCATCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 1893
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2255 TCAATCTTATATGCAGCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 2314
Query 1894 GTCCAATTATCAATATACCAATGCTGTTACTCTAGCTCCTAATACTCAGTTCTATGGCCA 1953
|||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 2315 GTCCAATTATCAATATACCAATTCTGTTGCTCTAGATCCTAATACTCAGTTCTATGGCCA 2374
Query 1954 TGTGGATGGATCTCAAGTTTCTCTTCCCCAATCCACATTTTATTATGAAACTGTTCCTGG 2013
||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2375 TGTCGATGAATCTCAAGTTTCTCTTCCCCAGTCGACATTTTATTATGAAACTGTTCCTGG 2434
Query 2014 TACAACTGAAGTTGTTCCTGCAGCAGCCAGTGCTGGTGAAGCTTATTACGATTTCAATGG 2073
||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 2435 TACAAGTGAAGTTGCTCCCACAGCAGCCAGTGCTGGTGAAGCTTATTATGATTTCAATGG 2494
Query 2074 TGCAGCTCCACTGTTTCCTGTCATTAGCTCGG-GTGAGTCATCTCTACATCACAGTGGAG 2132
|||||||||||| |||||| |||||||||| | |||||||| ||||||||||||||||
Sbjct 2495 TGCAGCTCCACTTTTTCCTATCATTAGCTCCACG-GAGTCATCGCTACATCACAGTGGAG 2553
Query 2133 TTGGTTCTGCTAATCACCACATCCCAAACAACTCTTCTACAGCTGCAGTGCCTAGTTCGA 2192
||||||||||||||||| ||||| ||| ||| |||||||||| || ||||||||||||||
Sbjct 2554 TTGGTTCTGCTAATCACTACATCTCAAGCAATTCTTCTACAGTTGTAGTGCCTAGTTCGA 2613
Query 2193 GATCCAATGACTCTACTGAGGTTGGATCTTCAGCAACTGCTTCTAAATCCACAGATGTTA 2252
|| ||||||||| | ||||| ||| |||||| |||||| ||||| |||||||||||||||
Sbjct 2614 GAACCAATGACTTTGCTGAGATTGCATCTTCGGCAACTACTTCTCAATCCACAGATGTTA 2673
Query 2253 CAAGTGGATCGTCTCTATTAGCAAAAGGTCAAACTAAAGTGAAACGGAC-AAAAAAGAAA 2311
|| ||| |||||||||||||||||| |||||||| |||||||||||| | |||||||
Sbjct 2674 CAGGTGAATCGTCTCTATTAGCAAAGGGTCAAACGAAAGTGAAACGG-CTAAAAAAGCGG 2732
Query 2312 ACAGTAGCTGCTACATCTACATTGAGGTCAAATAAAAAGGTTTCCAGTTTGGTTGACAAG 2371
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2733 ACAGTAGCTGCTACATCCACATTGAGGTCAAATAAAAAGGTTTCGAGTTTGGTTGACAAG 2792
Query 2372 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGcgaagaagaagaagatgattccgaaatc 2431
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2793 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGTGAAGAAGAAGAAGATGATTCCGGAATC 2852
Query 2432 ctagatagaaaaagaaaacgagaaatcgaagaatggaaatCTCGACAAATCGCAAGTGGA 2491
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2853 CTAGATAGAAAAAGAAAACGAGAAATTGAAGAATGGAAATCTCGACAAATCGCAAGTGGA 2912
Query 2492 GAGGCTAAAGACAACGCAAATTTCCAACCCCTGGGTGGTGACTGGCGTGAGAAAGTGAAA 2551
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2913 GAGGCTAAAGACAACGCAAATTTCCAACCTCTCGGTGGTGACTGGCGTGAGAAAGTGAAG 2972
Query 2552 CGGAAGAGAGAACGAGCTGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAACCT 2611
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2973 CGGAAGAGAGAACGAGCCGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAGCCT 3032
Query 2612 GATCTAACAAAACTCTCAGCAAATCTCCCGTCGGAATGGCAGGCATATTGGGACGAATCT 2671
|||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 3033 GATCTAACCAAACTCTCAGCAAATCTCCCATCGGGATGGCAGGCATATTGGGACGAATCT 3092
Query 2672 ACCAAAAAAGTTTACTATGGGAATACGAGTACATCTCAAACCAGTTGGACACGACCCACT 2731
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 3093 ACCAAAAAAGTTTACTATGGGAATACAAGTACATCTCAAACTAGTTGGACACGACCCACT 3152
Query 2732 ACCTGAACCTCAATTGCTTTCTCGTCTCACATTTTTT-ACAATTTCTTCTGTGATACATT 2790
||||||||||||||| |||||||| | | |||||||| || |||||||||||||||||||
Sbjct 3153 ACCTGAACCTCAATTACTTTCTCGAC-C-CATTTTTTTACTATTTCTTCTGTGATACATT 3210
Query 2791 TGTTTTAGATT-CT--CTAATCTTACCTTTATGTAAATTTATTACAGAGCTAGTGTT 2844
||||||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 3211 TGTTTTAGATTTCTTTCTTCTCTTATCTTTATGTAAATTTATTACAGAGCTAGTGTT 3267
Score = 350 bits (189), Expect = 4e-95
Identities = 203/209 (97%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 27 GGTTAGAGTCTGAAGAGAGA--GTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTA 84
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTTAGAGTCTGAAGAGAGATTGTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTT 60
Query 85 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCT-CTG 143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCTCCT- 119
Query 144 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 179
Query 204 AGCTACCCAATTCACCTTCTTCTTCAGGT 232
|| ||||||||||||||||||||||||||
Sbjct 180 AGTTACCCAATTCACCTTCTTCTTCAGGT 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109280912905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5