BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13490.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478735 jgi|Araly1|478735|fgenesh2_kg.3__1436__AT3G13490.1 3205 0.0
Ahg904299 jgi|Araly1|904299|Al_scaffold_0003_1427 182 1e-44
> Ahg478735 jgi|Araly1|478735|fgenesh2_kg.3__1436__AT3G13490.1
Length=2059
Score = 3205 bits (1735), Expect = 0.0
Identities = 1957/2062 (95%), Gaps = 24/2062 (1%)
Strand=Plus/Plus
Query 20 agagaTGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAACAATTACTCCG 79
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 AGAGATGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAGCAACTACTCCG 60
Query 80 TCTATCCTCTTCTTCTACACGTCTCGCCACCACAATATATGGACGAAGATCCTACCACTT 139
|||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TCTAACTTCTTCTTCTACACGTCTCGCCACCACAATATATGGAAGAAGATCCTACCACTT 120
Query 140 ATCACCTGCGCTACGATGTGCCTCCGCAG---CTTCTTCTTCTTCTTCCAGTGCCACGAC 196
|||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 121 ATCACCGGCGCTTCGATGTGCCTCCGCAGCTTCTTCTTCTTCTTCTTCCAATGCCACGAC 180
Query 197 GGCTGAAACTTCTAAACCCTCCGGCCGCAATCGCCGGTCTGCGTCATCTTCCAATTCCAC 256
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 181 GGCTGAAACTTCCAAACCATCCGGCCGCAACCGCCGGTCCGCGTCATCTTCCAATTCCAC 240
Query 257 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGCCA 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGTCA 300
Query 317 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAATCCCACAGTGCAAATCAGCTTCAAGA 376
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 301 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAAACTCACAGTGCAAATCAGCTTCAAGA 360
Query 377 GATATATAAGCATTTAGCTAACGGTGAAGAATCAGACAATGAGATTGATTGTGTTTCTAT 436
||| |||| |||| ||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 361 GATTTATAGGCATCTAGCTAATGGTGAAGAATCAGACAATGAGAGTGATCGTGTTTCTAT 420
Query 437 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGAAAACTTGCATTCTTGACTCTCAGGGA 496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGGAAACTTGCATTCTTGACTCTCAGGGA 480
Query 497 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAAAGACTTTCAGATGATCAGTTTGA 556
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 481 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAGAGGCTTTCAGATGATCAGTTTGA 540
Query 557 ACAGTTGAAGCAATTTATCGACATTGGTGATATTTTGGGTGCTAGTGGCTCGATGAAGAG 616
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 541 ACAGTTGAAGCAATTCATCGACATTGGTGATATTTTGGGTGCTCGTGGCTCAATGAAGAG 600
Query 617 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 660
Query 677 CCTTCCACTTCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 736
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTTCCACTGCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 720
Query 737 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGGGCAAAAAT 796
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 721 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGAGCAAAGAT 780
Query 797 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 840
Query 857 TCTTCAGGGAGCAGCTGGTGGAGCTGAAGCAAGACCTTTTGTAACGTTTCATAACTCACT 916
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 841 TCTTCAGGGAGCAGCTGGTGGAGCCGAAGCAAGACCTTTTGTAACGTTTCATAATTCACT 900
Query 917 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTAGTTGG 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTGGTTGG 960
Query 977 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAACGAAGGCATTTCAACACG 1036
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 961 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAATGAAGGCCTTTCAACACG 1020
Query 1037 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCATAGCAT 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1021 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCAGAGCAT 1080
Query 1097 GATGGACATGGCAGAATTAATTGTCACTCAATGTTCAATGGCAGTTAATGGGAAGCTAAC 1156
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1081 GATGGACATGGCAGAATTAATCGTCACTCAATGTGCAATGGCAGTTAATGGGAAGCTAAC 1140
Query 1157 AATTGATTACCAGGGAACAGAGATCTGCCTTGAGCGGCCTTGGAGAAGAGAAACCATGCA 1216
| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1141 ACTTGATTACCAGGGAACAGAAATCTGCCTCGAGCGGCCTTGGAGAAGAGAAACCATGCA 1200
Query 1217 TAATCTCGTTAAAGAGATAACAGGAATCAATTTCAGTGAGCTAGGGGAAGATCTCGGAAA 1276
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1201 TAATCTCGTTAAAGAGATAACAGGAATCAATTTTAGTGAGTTGGGGGAAGATCTCGGAAA 1260
Query 1277 TGCCAAAGACACAGTTCTGCTCGCACTCC-AGGACGTGCTTGAGCCCAAGGACAAATCTG 1335
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 1261 TGCCAAAGACACAGTTCTGCTGGCACTCCGAG-ACGTGCTTGAGCCCAAGGACAAATCTG 1319
Query 1336 GAATTAGAGCTTGCTCTTCCCTAGGCCATCTTCTTAATGAGATTTTTGAAGTTGTTGTAG 1395
||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 1320 GAATTGGAGCTTGCTCTTCCCTAGGCCATCTGCTTAATGAGGTTTTTGAAGTTTTTGTAG 1379
Query 1396 AGCCAAAGCTTGTGCAGCCCACATTTGTCTTGGACTACCCAATCGAGATATCTCCTTTGG 1455
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1380 AGCCAAAGCTTGTGCAGCCTACATTTGTCTTGGACTACCCAGTCGAAATATCTCCTTTGG 1439
Query 1456 CCAAGCCACATCGCGGCAATGCCGGTTTGACTGAAAGATTTGAGCTGTTCATCTGTGGTC 1515
|||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 1440 CCAAGCCACATCGCAGCAATGCAGCTTTGACTGAAAGATTTGAGCTGTTTATCTGTGGCC 1499
Query 1516 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACACGGTTGG 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1500 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACGCGGTTGG 1559
Query 1576 AAGAGCAAGTAAGGCAGCATAACGCAAAGAGAGCAGAGGCTGTTCGGGAATCTCCTGAAC 1635
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1560 AAGAGCAAGTAAGGCAACATAACGCAAAGAGAGCAGAGGCTGCACCGGAATCTCCTGAAC 1619
Query 1636 CAAACGCAAAGAAAgatgatgatgatgatgaGTCATACGAAGTGACCCTTGACGAAGACT 1695
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1620 CAAACGCAAAGAAAGATGATGATGATGATGAGTCATACGAGGTGGCCCTTGACGAAGACT 1679
Query 1696 TTCTCACTGCCTTGGAATACGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1755
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TTCTCACTGCCCTGGAATATGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1739
Query 1756 GGCTGGTGATGCTGTTGACGAACTCCGCGAGTATAAGAGACGTCATTGCTTTTCCTGTTC 1815
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1740 GGCTGGTGATGCTGTTGACAAACTCCGCGAGTATAAGAGACGTGATTGCTTTTCCTGTTC 1799
Query 1816 TGAAACTTCAGCAGTAACACTGAAACATGC--AA-GTGGTAATGCATGTTGTAGCTTTTA 1872
||||| |||||||||||| || || ||||| || |||||||||||||||||||||| ||
Sbjct 1800 TGAAAGTTCAGCAGTAACTCTTAATCATGCCGAAAGTGGTAATGCATGTTGTAGCTTCTA 1859
Query 1873 TAGCATTCTTGTGTATCTTT----ATTGGTGATTTCTCCAGCAGGAAGTTGGAGGAAGAA 1928
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 1860 TAGCATTCTTGTGTATCTTTCTTTATTGGTGATTTCTCCAGCAGGAAGTTGGAGTAGGA- 1918
Query 1929 TGTGTAACAGACGTCA-TTAGATAGCAAAACAAGAAG---TTATTTTATTCTTGATGAGT 1984
|||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1919 TGTGTAACAGACGT-AGTTAGACAGCAAAACAAGAAAAAATTATTTTATTCTTGATGAGT 1977
Query 1985 GCCTAA-A-A--CAGAACACACAAA-AAC-TTGGATCATTCCATTTTATCCCATTTGGCA 2038
|||||| | | |||||| |||||| || ||||||||||||||||||||||||| ||||
Sbjct 1978 GCCTAACACAGACAGAACCCACAAATAAAGTTGGATCATTCCATTTTATCCCATTCGGCA 2037
Query 2039 TGTGGTAAACAGTAAGAAACAA 2060
|||||||||||| |||||||||
Sbjct 2038 TGTGGTAAACAGAAAGAAACAA 2059
> Ahg904299 jgi|Araly1|904299|Al_scaffold_0003_1427
Length=2577
Score = 182 bits (98), Expect = 1e-44
Identities = 121/131 (92%), Gaps = 5/131 (4%)
Strand=Plus/Plus
Query 738 TATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGGGC-AAA--A 794
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 2269 TATGTTGATATGATTGCTAATCCTGTAGTGGCTGATGTGTTCCGGAGAAGGGCAAAAGTA 2328
Query 795 -ATCGTTT-CAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTC 852
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 GATTGTTTCCCTAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTC 2388
Query 853 CAGTTCTTCAG 863
|| ||||||||
Sbjct 2389 CACTTCTTCAG 2399
Score = 167 bits (90), Expect = 3e-40
Identities = 106/113 (94%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 628 GGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCA-CAAAGTCTCTCCTTCCACTT 686
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2057 GGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCATCAAA-TCTCTCCTTCCACTG 2115
Query 687 CCAGACAAATATCATGGTCTAACTGATATTGATAAAC-GTTACCGCCAACGGT 738
||||||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 2116 CCAGACAGATATCATGGCCTAACTGATATTGATAAAATGTTACCGCCAACGGT 2168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5