BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13550.1 Length=855 Score E Sequences producing significant alignments: (Bits) Value Ahg478742 jgi|Araly1|478742|fgenesh2_kg.3__1443__AT3G13550.1 1251 0.0 > Ahg478742 jgi|Araly1|478742|fgenesh2_kg.3__1443__AT3G13550.1 Length=799 Score = 1251 bits (677), Expect = 0.0 Identities = 760/800 (95%), Gaps = 6/800 (1%) Strand=Plus/Plus Query 58 AGAGTATCGGAAGACGACGACGACGGGAGATGATGACACCTGGCGGAAGCGGGAGGTTGA 117 |||| ||||||||| ||| ||||||||||||||||||||||||||||||||| || || | Sbjct 1 AGAGAATCGGAAGAGGACAACGACGGGAGATGATGACACCTGGCGGAAGCGGAAGATTAA 60 Query 118 GACCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 177 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGCCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 120 Query 178 AGACTTCAGTTTCTGCGTCAGGGAAGAGGATACAGAGGGAGATGGCTGAGCTTAACATTG 237 |||||||||||||||| || |||||||||||||| || |||||||| ||||||||| ||| Sbjct 121 AGACTTCAGTTTCTGCTTCTGGGAAGAGGATACAAAGAGAGATGGCGGAGCTTAACGTTG 180 Query 238 ATCCACCTCCTGATTGCTCAGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 297 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCCGCCTCCTGATTGCTCCGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 240 Query 298 CCATCATTGGTCCTTCGGGAACTCCCTATGAAGGAGGGATCTTTTTCCTGGATATAATTT 357 ||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||| Sbjct 241 CCATCATTGGTCCTTCGGGAACTCCTTATGAAGGAGGAATCTTTTTTCTCGATATAATTT 300 Query 358 TCCCATCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 417 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCCCGTCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 360 Query 418 GCAATGTTGATACTGCGGGAGATTTAAGTGTGAACATTCTAAGAGATAGTTGGAGTCCAG 477 ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 361 GCAATGTCGATACTGCGGGGGATTTAAGTGTGGACATTCTAAGAGATAGTTGGAGTCCAG 420 Query 478 CCCTTACAATCACTAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 537 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCCTTACAATCACAAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 480 Query 538 ATAGTCCAGCTTTACCGGTGATTGCACGGCTCTACTTGACAGATAGAGAAAAGCATGACG 597 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 481 ATAGTCCAGCTTTACCAGTGATTGCACGGCTCTACTTGACAGATAGAGACAAGCATGACG 540 Query 598 AGGTAGCCAAAGAATGGACATTGCGATTTGCCAAGTGAGATCTTCAATACGAGGAAAAGA 657 ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || Sbjct 541 AGGTAGCCAAAGAATGGACTTTGCGATTTGCCAAGTGAGATTTTCGATACGAGGAAA-GA 599 Query 658 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 659 Query 718 TCATAAAAGTGGAACCACAATGTTAGATGGCCAAGAAA-A---TTGTTTGCTCAGATAAT 773 ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 660 CCATCAAAGTGGAACCACAATGTTAGATGGCCAAGAAAGAAAGTTGTTTGCTCAGATAAT 719 Query 774 AGGCAACAATGTGAGGTAGGACCAATCCTCAACAACTCC-AATTTATTGAAGGTTATACA 832 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 720 AGGAAACAGTGTGAGGTAGGACCAATCCTCAACAACTCCCAATTTATTGAAGGTTACACA 779 Query 833 ATTTAGTGTCAAATCTTTTC 852 |||||||||||||||||||| Sbjct 780 ATTTAGTGTCAAATCTTTTC 799 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31642021110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5