BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13784.1 Length=1710 Score E Sequences producing significant alignments: (Bits) Value Ahg341506 jgi|Araly1|341506|fgenesh1_pg.C_scaffold_3001269 2477 0.0 Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1 763 0.0 > Ahg341506 jgi|Araly1|341506|fgenesh1_pg.C_scaffold_3001269 Length=1722 Score = 2477 bits (1341), Expect = 0.0 Identities = 1599/1724 (93%), Gaps = 16/1724 (1%) Strand=Plus/Plus Query 1 ATGGCTAATATAGTTTGGTGTAACATTGCCATGTTCTTGTTGGTCTCGTTGTTTCTCACT 60 ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| || Sbjct 1 ATGGCTACTATAGTTTGGTGTAACATTGCCATTTTCTTGTTGGTCTTGTTGTTTCTCGCT 60 Query 61 GACGATGCTGTTGTTGTTCTTGATGCCTTGGACAACGTTCCCAATAATATCAAGAACCAA 120 ||| ||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct 61 GACAATGCTATTGTTGTTCTTGATGCTTTGCACAACGTCCCCAATAATATCAAGAACCAA 120 Query 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180 Query 181 TACAAAGGAATCTATCATCTATTCTATCAATGGAACCAAAACGGCGCCGTCATGGACGTT 240 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 TACAAAGGAATCTACCATCTATTCTACCAATGGAACCAAAACGGCGCCGTCATGGACGTA 240 Query 241 AACAAAACCGTATGGGGCCATGCAACATCAACGGATCTAATCAACTGGATCACACTTTCT 300 || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 AATGAAACCGTATGGGGCCATGCAACGTCAACGGATCTAATCAACTGGATCACACTTTCT 300 Query 301 CCAGCAATCAGACCATCTCGACCGTCCGATATTAACGGATGCTGGTCCGGCTCCGTCACG 360 |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 301 CCAGCAATCAAACCATCTCGACCGTCCGATATCAACGGATGCTGGTCAGGCTCCGTCACG 360 Query 361 ATTCTC-CCTAATGGCAAACCTGTAATTCTTTACACCGGCAACGACCGTTATAACCGCCA 419 |||||| || ||||||||||| |||||| |||||||||| ||||||||||||||||| || Sbjct 361 ATTCTCACC-AATGGCAAACCCGTAATTATTTACACCGGTAACGACCGTTATAACCGTCA 419 Query 420 GGTCCAAAACTTAGTTAAACCTAAAAACCTCACCGATCCATATCTACGGCACTGGACCAA 479 |||||||||| ||| |||||||||||||||||||||||||||||| || ||||||| || Sbjct 420 GGTCCAAAACCTAGCTAAACCTAAAAACCTCACCGATCCATATCTCCGTCACTGGATAAA 479 Query 480 ATCGCCGGAAAATCCCCTCGTGACACCTAGCCCCGTCAACCACATCAACTCCAGCGCGTT 539 |||||||||||||||||| |||||||| | | |||| |||||||||||||||| |||||| Sbjct 480 ATCGCCGGAAAATCCCCTTGTGACACCGAACGCCGTAAACCACATCAACTCCACCGCGTT 539 Query 540 TCGTGATCCAACCACCGCGTGGTTTGGCCGTGACGGGCGTTGGCGCATAACCACCGGAAG 599 |||||||||||||||||||||| | ||||||||| ||||||||| |||||||| ||||| Sbjct 540 TCGTGATCCAACCACCGCGTGGCTAGGCCGTGACAAGCGTTGGCGTATAACCACTGGAAG 599 Query 600 CCAAGAAGGTCGACGTGGATTAGCGATTCTACACACGAGCAAAGATTTCGTAATATGGAA 659 |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 600 CCAAGAAGGTCGCCGTGGATTAGCGATTCTACACACGAGCCGCGATTTCGTACGATGGAA 659 Query 660 GCAATCTCCAAAGCCTCTTCATTACCACGACGGTACCGGAATGTGGGAGTGCCCTGATTT 719 ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 660 GCAATCTCCGAAGCCTCTTCATTACCACGAAGGTACCGGAATATGGGAGTGCCCTGATTT 719 Query 720 TTTCCCGGTGGCTAGAACTGATTCACGGGGCCTAGATACGTCTTTTTCAAG-TGGGCCGA 778 |||||||||| | |||||||||||||| ||||| |||||||| | || | |||||||| Sbjct 720 TTTCCCGGTGTCGAGAACTGATTCACGCGGCCTCGATACGTCGTCGTCT-GCTGGGCCGA 778 Query 779 TGGTTAAACACGTCCTTAAAGTGAGCTTAACAGATACGTTTAATGATTACTACACGATTG 838 || |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 779 TGATTAAACACGTGCTTAAAGTGAGCTTAACAGATACTTTTCGTGATTACTACACGATTG 838 Query 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898 Query 899 CGGCTCCGAGATATGATTACGGCAAATTTTATGCGTCGAAAACATTTTACGACTCTGTTA 958 ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 899 CGGCTCCGAGATACGATTACGGCAAATTTTACGCGTCGAAGACATTTTACGACTCGGTTA 958 Query 959 ATCAGCGCAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCACCGGAGAAAGATAACATCA 1018 |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 959 ATCAACGGAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCGCCGGAGAAAGATAACATCG 1018 Query 1019 AGAAGGGTTGGGCCGGTTTACAGGCTATTCCTAGGAAAGTATGGCTTGATGAATCAGGAA 1078 ||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| | Sbjct 1019 AGAAGGGTTGGGCTGGTTTGCAGGCTATTCCTAGGGAAGTATGGCTTGATAAATCAGGCA 1078 Query 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138 Query 1139 GGGGAAACAAACTATTGAAAGGAGG-G--TCGGTAATGGAGGTTCATGGAGTCACAGCTC 1195 ||| ||||||| | ||||||||||| | ||||| || ||||||||||||||||||||| Sbjct 1139 GGGTAAACAAAGTTTTGAAAGGAGGAGGATCGGTCATAGAGGTTCATGGAGTCACAGCTT 1198 Query 1196 CACAAGCAGATGTGGAAGTTTTCTTCAAAGTGAGTGGTTTTGACTTAGAGAAAGCAGATG 1255 |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| Sbjct 1199 CACAAGCAGATGTGGAGGTTTTCTTTAAAGTGAGTGGTTTAGACTTAGAGAAAGCAGATG 1258 Query 1256 TGATTGAACCGGGCTGGACCGATCCGCAATTGATCTGCAGTCAGAGGAATGCGTC----- 1310 ||||||||||||||||||||||||| |||||||| |||||| ||| |||||| || Sbjct 1259 TGATTGAACCGGGCTGGACCGATCCACAATTGATTTGCAGTGAGAAGAATGCATCGTTTG 1318 Query 1311 --A-T-CAGGTTTAGGTCCATTCGGTTTAATGGTTCTAGCTTCCAAGAACATGGAAGAGT 1366 | | | |||||||| |||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1319 TTAATTCCGGTTTAGGCCCATTCGGTTTAATGGTTCTTGCTTCCAAGGACATGGAAGAGT 1378 Query 1367 ATACATCGGTCAATATCAGAATCTTCAGAGCTGGTGAGAATAGTAAGGAGCACGTAGTGG 1426 |||||||||||||| |||||||||| |||||| ||| ||||| ||||||||||||||||| Sbjct 1379 ATACATCGGTCAATTTCAGAATCTTTAGAGCTCGTGGGAATAATAAGGAGCACGTAGTGG 1438 Query 1427 TCATGTGCAGTGACCAAAGCACATCAAGTTTAGAGAAAGGGAATGATAAAACAACTTATG 1486 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1439 TCATGTGCAGTGACCAAAGCAGATCAAGTTTAGAGAAAGGGAATGATAAAACAACATATG 1498 Query 1487 GTGCTTTTTTAGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1546 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 GTGCTTTTATGGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1558 Query 1547 CAATAGTGGAGAGCTTTGGTGGGAAAGGGAAAACATGTATTACCTCGAGAGTTTATCCAA 1606 |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 1559 CAATAGTGGAGAGCTTTGGTGGAAAAGGGAAAACATGTATTACCTCAAGAGTATATCCAA 1618 Query 1607 AATTGGCAATAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTA 1666 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 AATTGGCAACAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTG 1678 Query 1667 ATGTTTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1710 || | ||||||||||||||||||||||||||||||||||||||| Sbjct 1679 ATATCTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1722 > Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1 Length=1962 Score = 763 bits (413), Expect = 0.0 Identities = 1256/1649 (76%), Gaps = 113/1649 (7%) Strand=Plus/Plus Query 115 AACCAACCTTACCGAACCGGTTAT-CATTTCCAGCCTCCCAAAAATTGGATGAACGGGCC 173 ||||| || ||||| || |||| | ||||| || ||||| |||||||||||||||||||| Sbjct 174 AACCAGCCCTACCGGACAGGTT-TCCATTTTCAACCTCCAAAAAATTGGATGAACGGGCC 232 Query 174 TATGATATACAAAGGAATCTATCATCTATTCTATCAATGGAACCA-AAACGGCGCCGTCA 232 |||||||||||||||||| |||||||| ||||| |||||||||| ||| || || || Sbjct 233 TATGATATACAAAGGAATATATCATCTTTTCTACCAATGGAACCCGAAA-GGAGCTGTG- 290 Query 233 TGGACGTTAACAAAACCGTATGGGGC-CATGCAACATCAACGGATCT-AATCAACTGGAT 290 ||| || |||| | || |||| | ||| | || ||||| || || ||||||||||| Sbjct 291 TGGG-GT-AACAT--C-GTGTGGG-CTCATTCCACGTCAACAGA-CTTAATCAACTGGAA 343 Query 291 CACACTTTCTCCAGCAATCAGACCATCT-CGACCGTCCGATATTAACGGATGCTGGTCCG 349 | ||| | ||||||| ||| |||||| | ||||| |||||| |||||||||||||||| Sbjct 344 CCCACATCCTCCAGCTATCTTCCCATCTGC-ACCGTTCGATATCAACGGATGCTGGTCCG 402 Query 350 GCTCCG-TCACGATTCTCCCTAATGGCAAACCTGTAATTCTTTACACCGGCAA-CGACCG 407 | || | | || |||||||||||||||||||| || ||||| || ||||| || ||||| Sbjct 403 GTTCGGCT-ACAATTCTCCCTAATGGCAAACCGGTTATTCTATATACCGG-AATCGACCC 460 Query 408 TTATAACCGCCAGGTCCAAAACTTAGTTAAACCTAAAAACCTCACCGATCCATATCTACG 467 | | |||| |||||||||||| ||| | ||||| || ||| | ||||| ||||| || Sbjct 461 TAAGAACCAACAGGTCCAAAACATAGCGGAGCCTAAGAATCTCTCTGATCCTTATCTCCG 520 Query 468 -GCACTGGACCAAATCGCCGGAAAATCCCCTCG-TGACACCTAGCC-CCGTCAACC-ACA 523 | | |||| ||||||||| |||||| || | || | ||| | | |||| ||| | | Sbjct 521 AGAA-TGGAAAAAATCGCCGTTAAATCCTCT-GATGGCTCCT-GACGCCGTTAACGGA-A 576 Query 524 TCAACTCCAGCGCGTTTCGTGATCCAACCACCGCGTGGTTTGGCCGTGACGGGC-GTTGG 582 ||||| ||||| |||| ||||| ||||||||||||||| | |||| ||| | || || Sbjct 577 TCAACGCCAGCTCGTTCCGTGACCCAACCACCGCGTGGCTAGGCCAAGACAAGAAGT-GG 635 Query 583 CGCA-TAACCACCGGAAGCCAAGAAGGTC-GACGTGGATTAGCGATT-CTACACACGAGC 639 | | | | | ||||||| |||| | | |||||| |||||||| || ||||||| Sbjct 636 AG-AGTGATTATCGGAAGC-AAGATTCACCGTCGTGGACTAGCGATTACTT-ACACGAGT 692 Query 640 AAAGA-TTTCGTAATATGG-AAGCAATCTCCAAAGCCTCTT-CATTACCACGACGGTACC 696 ||||| |||| ||| |||| || |||||||| |||| || |||||| ||||||| | Sbjct 693 AAAGACTTTC-TAAAATGGGAAA-AATCTCCAGAGCCG-TTGCATTACGACGACGGAAGT 749 Query 697 GGAATGTGGGAGTGCCCTGATTTTTTCCCGGTGGCTAGAACTGATTC-A-CGGGGCCTAG 754 ||||||||||| || |||||||||||||||||| | ||| || ||| | ||| | | | Sbjct 750 GGAATGTGGGAATGTCCTGATTTTTTCCCGGTGACGAGATTTGGTTCTAACGGCG--TGG 807 Query 755 ATACGTCTT--TTTCAAGTGGGCCGA-TG-G-TT--AAA-CACGTCCTT-AAAGTGAGCT 805 | ||||||| ||| |||| || | || | || ||| ||||| || ||||| |||| Sbjct 808 AAACGTCTTCGTTTG--GTGGACCTAATGAGATTTTAAAGCACGTG-TTGAAAGTAAGCT 864 Query 806 TA-ACAGATACGTTTA-ATGATTACTACACGATTGGTACGTACGAT-GAAGTGAGAGATG 862 | || |||||| | ||||||| |||||||||||||||||||| | || | |||| Sbjct 865 TGGAC-GATACGAA-ACATGATTATTACACGATTGGTACGTACGACCGG-GTTAAAGATA 921 Query 863 TCTACGTACCGGACAA-GGGTTTT-GTTCAGGAC-GAAACGGCTCCGAGATATGATTACG 919 | |||||||||||| |||||| | | |||| | | ||||||| ||||| ||||||| Sbjct 922 AATTCGTACCGGACAATGGGTTTAAGAT--GGACAGTA-CGGCTCCAAGATACGATTACG 978 Query 920 GCAAATTTTATGCGTCGAAAACATTTTACGACTCTGTTAATCAGCGCAGGATTTTGTGGG 979 | || | ||| ||||||||||| ||||| ||||||| || | || || || ||||||| Sbjct 979 GGAAGTATTACGCGTCGAAAACGTTTTATGACTCTGGCAAGAACCGGAGAATCTTGTGGG 1038 Query 980 GTTGGGTTAACGAGTCGTCACCGGA-GAAAGATAACATCAAGAAGGGTTGGGCCGGT-TT 1037 ||||| ||||||||| || | | || ||| | | |||| || ||| ||||| || Sbjct 1039 GTTGGACTAACGAGTCATCGTCTGTTGAG-GATGATGTTGAGAAAGGCTGGTCCGGTATT 1097 Query 1038 ACAGGCTATTCCTAGGAAAGTATGGCTTGAT-GAATCAGG-AAAGAGATTGGTGCAATGG 1095 ||| | ||||| |||||| ||||||||||| || ||||| ||| | ||| | || ||| Sbjct 1098 -CAGACGATTCCGAGGAAAATATGGCTTGATCGA-TCAGGGAAACA-ATTAATTCAGTGG 1154 Query 1096 CCGGTTAAGGAAATAGAGAGGTTACGTAC-AACGCAAGTCAAG---TGGGGAAACAAACT 1151 ||||||| |||| | || || |||||||| || |||||||| | | |||||| | Sbjct 1155 CCGGTTAGGGAAGTTGAAAGATTACGTACGAAA-CAAGTCAAAAACTTACGCAACAAAGT 1213 Query 1152 AT-TGAAAGG-AGGGTC--GG-TAATGGAGGT-TCATGGAGTCACAGCTCCACAAGCAGA 1205 | | |||| ||| || || | || || | | |||| || |||||| |||| || || Sbjct 1214 -TCT-AAAGTCAGGATCTAGGCT--TGAAG-TCT-ATGGTGTGACAGCTGCACAGGCGGA 1267 Query 1206 TGTGGAAGTTTTCTTCAAAGTGAGTGGTTTTGACTTAGAGAAAGCAGATGTGATTGAACC 1265 |||||||||||| |||||||| || | |||| |||||||| ||||| || |||| Sbjct 1268 TGTGGAAGTTTTATTCAAAGTAAGAG------ACTTGGAGAAAGCGGATGTTATAAAACC 1321 Query 1266 GGGCTGGACCGATCCGCAATTGATCTGCAGTCAGAGGAATG---CG-TCA--TCAGGTTT 1319 | ||||| |||||||| ||||| || || |||| ||||| || | | || ||||| Sbjct 1322 AAGTTGGACTGATCCGCAGTTGATTTGTAGCCAGATGAATGTATCGGTTAAGTCTGGTTT 1381 Query 1320 AGGTCCATTCGGTTTAATGGTTCTAGCTTCCAAGAACATGGAAGAGTATACATCGGTCAA 1379 |||||||||||||||||||||| | || || ||||| |||||||||| ||||| || | Sbjct 1382 AGGTCCATTCGGTTTAATGGTTTTGGCATCTAAGAATTTGGAAGAGTACACATCTGTTTA 1441 Query 1380 TATCAGAATCTTCAGAGCTGGTGAGAATAGTAAGGAGCACGTAGTGGTCATGTGCAGTGA 1439 | | |||||||||| |||| || | || || | || | || ||||||||||||||||| Sbjct 1442 TTTTAGAATCTTCAAAGCTCGTCAAAACAGCGATAAGTATGTTGTGGTCATGTGCAGTGA 1501 Query 1440 CCAAAGCACATCAAGTTTAGAGAAAGGGAATGATAAAACAACTTATGGTGCTTTTTTAGA 1499 |||||||| ||| | ||| ||| ||||| ||||| || || || |||||| | || Sbjct 1502 CCAAAGCAGATCTTCACTGGAGGAAGATAATGACAAAACGACCTACGGAGCTTTTGTGGA 1561 Query 1500 TATCTC-TCCTTATCAACCAATCTCTCTCAGGA-CTTTGATTGATAAATCAATAGTGGAG 1557 ||| | |||| | |||||| | || ||||| | | ||||||||| | || |||||||| Sbjct 1562 TAT-TAATCCTCACCAACCACTATCCCTCAG-ATCCTTGATTGATCATTCTGTAGTGGAG 1619 Query 1558 AGCTTTGGTGGGAAAGGGAAAA-CATGTATTACCTCGAGAGTTTATCCAAAATTGGCAAT 1616 || |||||||| |||||| | | |||| |||||||| ||||| ||||||||||||||||| Sbjct 1620 AGTTTTGGTGG-AAAGGGGAGAGCATGCATTACCTCAAGAGTGTATCCAAAATTGGCAAT 1678 Query 1617 AGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTAATGTTTTAAG 1676 |||| |||| ||||||||||||||||||| | |||| ||||| |||| || | |||| Sbjct 1679 AGGAAAAAGTTCACATCTCTTTGCTTTTAATTATGGATATCAAAGTGTTGATCTCTTAAA 1738 Query 1677 CCTAAGTGCTTGGAGCATGAAGTCTTCTC 1705 ||||| ||||||||||||||| ||| ||| Sbjct 1739 CCTAAATGCTTGGAGCATGAACTCTGCTC 1767 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64143972580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5