BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13950.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887308 jgi|Araly1|887308|Al_scaffold_0795_1 989 0.0
Ahg904320 jgi|Araly1|904320|Al_scaffold_0003_1448 966 0.0
> Ahg887308 jgi|Araly1|887308|Al_scaffold_0795_1
Length=660
Score = 989 bits (535), Expect = 0.0
Identities = 589/616 (96%), Gaps = 0/616 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCAACGGTCAAGAAGGTCATCGATACGAAGAATCATCATCAGAGTGGTTCGTA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCAACGGTCAAGAAGGTCATCGACACGAAGAATCATCATCAGAGTGGTTCGTA 60
Query 61 AAGTATCTAAAACGTCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTATCTAAAACATCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
Query 121 GCTACGGTTATAGCCGGTATGAGCTTTCAAGTTATGGTTAATCCTCCCGGTGGCGTATGG 180
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GCTACGGTTATAGCCGCTATGAGCTTTCAAGCTATGGTTAATCCTCCCGGTGGCGTATGG 180
Query 181 CAAAGTGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGTTTTGTAAGGGGAGA 240
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 CAAAGCGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGGTTTGTAAGGGGAAA 240
Query 241 GCGGGAACTGCGGTATTGGAATATGAGAGTTCAAAGCGTATAGCGTATATTGGGATGATT 300
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||
Sbjct 241 GCGGGAACTGCGGTATTGGAGTATGAGAGTTCAAAGCGTATAGCCTATCTTGGGATGGTT 300
Query 301 ATTAGCAGTACAGTGTCATTTTCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAGCAGTACAGTGTCGTTTTCTGCCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
Query 361 ATACGACTAAGGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTT 420
||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 361 ATACGACTAAGGAACCGAATGATAATGGCGATCCTCGTAACATTTATGGTAGTGGCGGTT 420
Query 421 CTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGACGATCAAATA 480
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 421 CTTTGTATATCGGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAGTCCGATGATCAAATA 480
Query 481 ATTCGTTATATACTATTGATTTATGTGGGATTTTGGGTTGTATTTCCTGTTTTGATACTT 540
|||||| |||||||| |||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 481 ATTCGTGATATACTACTGATATATGTGGGATTTTGGGTCATATTTCCTGTTTTAATACTT 540
Query 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
Query 601 CCACGTCGGCGACGGT 616
| ||||||||||||||
Sbjct 601 CAACGTCGGCGACGGT 616
> Ahg904320 jgi|Araly1|904320|Al_scaffold_0003_1448
Length=660
Score = 966 bits (523), Expect = 0.0
Identities = 585/616 (95%), Gaps = 0/616 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCAACGGTCAAGAAGGTCATCGATACGAAGAATCATCATCAGAGTGGTTCGTA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCAACGGTCAAGAAGGTCATCGACACGAAGAATCATCATCAGAGTGGTTCGTA 60
Query 61 AAGTATCTAAAACGTCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTATCTAAAACATCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
Query 121 GCTACGGTTATAGCCGGTATGAGCTTTCAAGTTATGGTTAATCCTCCCGGTGGCGTATGG 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCTACGGTTATAGCTGGTATGAGCTTTCAAGTTATGGTTAATCCTCCTGGTGGCGTATGG 180
Query 181 CAAAGTGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGTTTTGTAAGGGGAGA 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |
Sbjct 181 CAAAGTGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGGTTTGTAAAGGAAAA 240
Query 241 GCGGGAACTGCGGTATTGGAATATGAGAGTTCAAAGCGTATAGCGTATATTGGGATGATT 300
|| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||
Sbjct 241 GCAGGAACTGCGGTATTGGAGTATGAGAGTTCAAAGCGTATAGCCTATCTTGGGATGGTT 300
Query 301 ATTAGCAGTACAGTGTCATTTTCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAGCAGTACAGTGTCGTTTTCTGCCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
Query 361 ATACGACTAAGGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTT 420
||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 361 ATACGACTAAGGAACCGAATGATAATGGCGATCCTCGTAACATTTATGGTAGTGGCGGTT 420
Query 421 CTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGACGATCAAATA 480
||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct 421 CTTTGTATATCGGCGGCGTTCTTCTTCACCATCGTGCTGGTTCAGTCCGATGATCAGATA 480
Query 481 ATTCGTTATATACTATTGATTTATGTGGGATTTTGGGTTGTATTTCCTGTTTTGATACTT 540
|||||| |||||||| |||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 481 ATTCGTGATATACTACTGATATATGTGGGATTTTGGGTCATATTTCCTGTTTTAATACTT 540
Query 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
Query 601 CCACGTCGGCGACGGT 616
| ||||||||||||||
Sbjct 601 CAACGTCGGCGACGGT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5