BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14020.1 Length=1241 Score E Sequences producing significant alignments: (Bits) Value Ahg904328 jgi|Araly1|904328|Al_scaffold_0003_1456 1260 0.0 Ahg359494 jgi|Araly1|359494|fgenesh1_pg.C_scaffold_286000001 870 0.0 > Ahg904328 jgi|Araly1|904328|Al_scaffold_0003_1456 Length=948 Score = 1260 bits (682), Expect = 0.0 Identities = 869/954 (91%), Gaps = 33/954 (3%) Strand=Plus/Plus Query 315 ATGCAAGAGTTCCATAGTAGCAAAGATTCATTGCCTTGTCCTGCAACTTCTTGGGATAAC 374 ||||||||||| | | |||||||| |||||||||| ||||| |||||||||||| ||| Sbjct 1 ATGCAAGAGTTTC--A-CAGCAAAGAATCATTGCCTTATCCTGTAACTTCTTGGGAAAAC 57 Query 375 TCTGTCTTCACCAACTCAAATGTCCAAGGATCATCATCCTTGACCGATAACAACACTTTA 434 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 58 TCTGTCGTCACCAACTCAAATGTCCAAGGATCATCATCCATGACCGATAACAACACTTTA 117 Query 435 AGC-------T-----TGA---C-A---A--T---GGAGATGAAACAAACTGGTTTTCAA 470 ||| | ||| | | | | ||||||||||||||||||||||| Sbjct 118 AGCTTGAAGATGGAGATGATGTCTACCCATTTCCCTGAGATGAAACAAACTGGTTTTCAT 177 Query 471 ATGCAGC-ACTATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 529 |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 TTGCA-CGACCATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 236 Query 530 TGCTAGCTTAAGTGAACCTACTAATCGTTATGGCCACAACATTGTTGTCACTCATCTCTC 589 ||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| ||||| Sbjct 237 TGCGAGCTTAAGCGAACCTAATAATCGTTATGACCACAACATTGTTGTTACTCAACTCTC 296 Query 590 AGGTTACAAAGAAAACCCGGAAAATCCTATTGGAAGTCATTCGATA-TCAAAGGTGTCTC 648 ||||||||||||||||| ||| |||||||||||||||||||||| | || |||||||||| Sbjct 297 AGGTTACAAAGAAAACCTGGAGAATCCTATTGGAAGTCATTCGA-AGTCGAAGGTGTCTC 355 Query 649 AAGATTCAGTGGTTCTTCCTATTGAGGCGGCTTCTTGGCCTTTACACGGCAATGTAACGC 708 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 356 AAGATTCAGTGGTTCTTCCTATTGAGGCGTCTTCTTGGCCTTTACACGGCAATGTAACAC 415 Query 709 CACATTTCAATGGTTTCTTGTCTTTTCCTTATGCATCACAACACACGGTGCAGCATCCTC 768 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 416 CACATTTCAATGGTTTCTTGTCTTTTCCGTATGCATCACAACACATGGTGCAGCATCCTC 475 Query 769 AAATCAGAGGGTTGGTTCCGTCTAGAATGCCTTTGCCTCACAACATTCCAGAGAACGAAC 828 |||| ||||||||||||| | |||| ||||||||||||||||||||||||||||||||| Sbjct 476 AAATTGGAGGGTTGGTTCCTTGTAGAGTGCCTTTGCCTCACAACATTCCAGAGAACGAAC 535 Query 829 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAA 888 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 536 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAA 595 Query 889 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATATCTTCACGAGTCGCGGC 948 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 596 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATACCTTCACGAGTCGCGCC 655 Query 949 ACCTCCATGCACTAAAGAGAGTTAGAGGCTCTGGTGGACGTTTCCTCAACACAAAGAAGC 1008 |||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 656 ACCTTCATGCGTTAAAGAGAGCTAGAGGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGC 715 Query 1009 ATCAAGAATCAAATTCCTCACTATCTCCTCCATTCTTG-ATTCCACCTCATGTCTTCAAG 1067 |||||||||||| || |||| | |||||||||||||| || ||||| |||||||||||| Sbjct 716 TTCAAGAATCAAAATCTTCACAAGCTCCTCCATTCTTGGAT-CCACCGCATGTCTTCAAG 774 Query 1068 AACTCTCCAGGAAAGTTCCGGCAAATGGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTC 1127 |||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||| | Sbjct 775 AACTCTCCAGGAAAATTCCGGCAACGGGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGC 834 Query 1128 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAGCAAAACCCA 1187 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 835 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAACAAAACCCA 894 Query 1188 CAATTCAGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 1241 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 CAATTCGGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 948 > Ahg359494 jgi|Araly1|359494|fgenesh1_pg.C_scaffold_286000001 Length=567 Score = 870 bits (471), Expect = 0.0 Identities = 536/568 (94%), Gaps = 2/568 (0%) Strand=Plus/Plus Query 675 GCGGCTTCTTGGCCTTTACACGGCAATGTAACGCCACATTTCAATGGTTTCTTGTCTTTT 734 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 GCGGCTTCTTGGCCTTTACACGGCAATGTAACACCACATTTCAATGGTTTCTTGTCTTTT 60 Query 735 CCTTATGCATCACAACACACGGTGCAGCATCCTCAAATCAGAGGGTTGGTTCCGTCTAGA 794 || |||||||||||||||| |||||||||||||||||| ||||||||||||| | |||| Sbjct 61 CCGTATGCATCACAACACATGGTGCAGCATCCTCAAATTGGAGGGTTGGTTCCTTGTAGA 120 Query 795 ATGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 854 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 180 Query 855 CAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 914 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 CAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 240 Query 915 AAAGTCCGCAAACCATATCTTCACGAGTCGCGGCACCTCCATGCACTAAAGAGAGTTAGA 974 ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| |||| Sbjct 241 AAAGTCCGCAAACCATACCTTCACGAGTCGCGCCACCTTCATGCGTTAAAGAGAGCTAGA 300 Query 975 GGCTCTGGTGGACGTTTCCTCAACACAAAGAAGCATCAAGAATCAAATTCCTCACTATCT 1034 ||||||||||| |||||||||||||||||||||| |||||||||||| || |||| | || Sbjct 301 GGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGCTTCAAGAATCAAAATCTTCACAAGCT 360 Query 1035 CCTCCATTCTTG-ATTCCACCTCATGTCTTCAAGAACTCTCCAGGAAAGTTCCGGCAAAT 1093 |||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 361 CCTCCATTCTTGGAT-CCACCGCATGTCTTCAAGAACTCTCCAGGAAAATTCCGGCAACG 419 Query 1094 GGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTCTCGACAACATCTTGCTCGGACATAAC 1153 ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 420 GGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGCTCGACAACATCTTGCTCGGACATAAC 479 Query 1154 CGGGAACAACAACGACATGTTCCAGCAAAACCCACAATTCAGGTTCTCAGGTTATCCATC 1213 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 480 CGGGAACAACAACGACATGTTCCAACAAAACCCACAATTCGGGTTCTCAGGTTATCCATC 539 Query 1214 AAACCACCATGTCTCAGTCCTCATGTGA 1241 |||||||||||||||||||||||||||| Sbjct 540 AAACCACCATGTCTCAGTCCTCATGTGA 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46357467072 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5