BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14067.1
Length=2587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478817 jgi|Araly1|478817|fgenesh2_kg.3__1518__AT3G14067.1 3951 0.0
> Ahg478817 jgi|Araly1|478817|fgenesh2_kg.3__1518__AT3G14067.1
Length=2552
Score = 3951 bits (2139), Expect = 0.0
Identities = 2430/2570 (95%), Gaps = 21/2570 (1%)
Strand=Plus/Plus
Query 7 TCTTCTTCTTCCATCGCCATTGCCATGGCTAAGctctctctttcctccatcttcttcgtc 66
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 1 TCTTCTTCTTCCATCGCCATTGTCATGGCTAAGCTCTCTCCTTCCTCCGTCTTCTTCGTC 60
Query 67 ttccctctcctcctctgtttcttttccccttcttcttcttcATCGGATGGCTTAGAATCC 126
||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 TTCTCTCTCTTCCTCTGTTTCTTCTCCCCTTCTTATTCTTCATCGGATGGCTTAGAATCC 120
Query 127 TACATCGTCCATGTGCAGAGATCTCATAAGccttccctcttctcctcccacaacaactgg 186
||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 121 TACATCGTCCATGTGCAAAGATCTCATAAGCCTTCCCTCTTCTCCTCCCATAACCACTGG 180
Query 187 cacgtctctctccttcgctctctcccttcttctccccAACCAGCAACGCTGCTCTACTCT 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CACGTCTCTCTCCTTCGCTCTCTCCCTTCTTCTCCCCAACCAGCAACGCTCCTCTACTCT 240
Query 247 TATTCACGCGCCGTTCATGGCTTCTCCGCTCGTCTCTCCCCTATCCAAACCGCCGCCCTC 306
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 241 TACTCACGCGCCGTTCATGGCTTCTCCGCTCGCCTCTCCCCTATCCAAACAGCCGCACTC 300
Query 307 CGCCGTCATCCTTCAGTCATCTCCGTTATACCTGATCAAGCGCGTGAGATCCACACAACT 366
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 301 CGCCGTCATCCTTCCGTCATTTCCGTTATACCAGATCAAGCGCGTGAGATCCACACCACT 360
Query 367 CACACGCCTGCCTTCCTCGGTTTCTCCCAAAACTCTGGACTCTGGAGCAACTCAAATTAC 426
||||| |||| ||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 361 CACACACCTGACTTCCTCGGTTTCTCCCAAAACTCTGGTCTCTGGGGCAACTCAGATTAC 420
Query 427 GGGGAAGACGTGATCGTCGGCGTTTTAGATACTGGAATCTGGCCGGAACATCCAAGTTTC 486
|| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 421 GGCGAGGACGTGATCGTCGGCGTTCTAGATACTGGAATCTGGCCGGAGCATCCAAGTTTC 480
Query 487 TCGGATTCAGGTCTCGGTCCAATTCCATCTACCTGGAAAGGCGAGTGCGAGATCGGACCT 546
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 481 TCGGATTCAGGTCTCGGTCCCGTTCCATCTACATGGAAAGGCGAGTGCGAGATCGGACCT 540
Query 547 GATTTTCCTGCCTCATCTTGCAATCGGAAGCTTATCGGAGCTCGAGCGTTTTACAGGGGA 606
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 541 GATTTTCCCGCCTCATCTTGCAATCGGAAGCTTATCGGAGCTCGAGCGTATTACAAGGGA 600
Query 607 TATTTAACGCAACGGAATGGAACAAAAAAGCATGCAGCCAAGGAATCGAGATCGCCGCGT 666
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 601 TATTTAACGCAACGGAATGGAACAAAAAAGCATGTAGCGAAGGAATCGAGATCGCCGCGC 660
Query 667 GATACAGAAGGTCATGGCACGCACACGGCATCTACGGCAGCTGGATCGGTGGTTGCTAAC 726
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 661 GATACAGAAGGTCATGGGACGCATACGGCATCTACGGCGGCTGGATCGGTGGTTGCAAAC 720
Query 727 GCGAGTTTGTACCAGTACGCGCGCGGAACAGCTAC-TGGGATGGCGTCAAAGGCGAGAAT 785
|||||||||| |||||||||||| ||||| ||| | |||||||||||| |||||||||||
Sbjct 721 GCGAGTTTGTTCCAGTACGCGCGTGGAACGGCT-CGTGGGATGGCGTCTAAGGCGAGAAT 779
Query 786 CGCCGCTTACAAAATCTGTTGGACCGGCGGATGTTACGATTCCGATATCCTCGCCGCCAT 845
||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 780 CGCCGCTTACAAAATCTGTTGGAGCAGCGGATGCTACGATTCCGATATCCTCGCCGCCAT 839
Query 846 GGATCAGGCGGTTGCCGACGGTGTTCACGTTATCTCTCTCTCCGTCGGAGCCAGCGGTTC 905
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGATCAGGCGGTTGCGGACGGTGTTCACGTTATCTCTCTCTCCGTCGGAGCCAGCGGTTA 899
Query 906 CGCCCCGGAGTATCACACGGACTCTATAGCGATCGGAGCATTTGGAGCCACGCGGCACGG 965
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 900 CGCCCCGGAGTATCACACGGATTCTATCGCGATCGGAGCATTTGGAGCCACGCGACACGG 959
Query 966 CATCGTCGTTTCTTGCTCCGCTGGGAATTCTGGTCCTAATCCTGAAACCGCGACGAACAT 1025
|||||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 960 CATCGTCGTTTCCTGCTCCGCTGGGAATTCTGGTCCTGGTCCTGAAACAGCCACGAACAT 1019
Query 1026 CGCTCCATGGATCTTAACCGTTGGTGCGTCCACCGTCGATAGAGAATTCGCCGCAAACGC 1085
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 CGCTCCATGGATCTTAACCGTTGGTGCGTCCACCGTCGATAGAGAATTCTCCGCAAACGC 1079
Query 1086 AATCACGGGAGACGGGAAAGTCTTCACGGGAACATCACTGTACGCAGGCGAATCTCTACC 1145
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AATCACTGGAGACGGGAAAGTCTTCACGGGAACATCACTGTACGCAGGCGAATCTCTACC 1139
Query 1146 GGATTCTCAACTTTCTCTGGTATATTCCGGCGATTGCGGAAGCAGATTGTGTTACCCTGG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGATTCTCAACTTTCTCTGGTATATTCCGGCGATTGCGGAAGCAGATTGTGTTACCCTGG 1199
Query 1206 GAAATTGAATTCATCATTGGTTGAAGGCAAAATCGTGCTCTGTGACAGAGGAGGCAACGC 1265
||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1200 GAAATTGAATTCAACATTAGTGGAAGGCAAAATCGTTCTCTGTGACAGAGGAGGCAACGC 1259
Query 1266 AAGAGTTGAGAAAGGAAGTGCAGTCAAGCTAGCCGGTGGTGCTGGTATGATTCTGGCGAA 1325
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1260 AAGAGTTGAGAAAGGAAGTGCCGTCAAGCTAGCCGGTGGTGCAGGTATGATTCTGGCGAA 1319
Query 1326 CACAGCTGAAAGCGGTGAAGAATTAACCGCCGATTCGCATCTCGTCCCGGCGACAATGGT 1385
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1320 CACAGCTGAAAGCGGTGAAGAACTCACCGCCGATTCGCATCTCGTCCCGGCGACAATGGT 1379
Query 1386 TGGAGCTAAAGCTGGAGATCAAATCCGCGACTACATCAAAACATCAGACTCTCCCACTGC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 TGGAGCTAAAGCTGGAGATCAAATCCGCGACTACATCAAAACATCAGACTCTCCCACCGC 1439
Query 1446 AAAAATCAGTTTCCTAGGCACTTTGATCGGACCATCTCCTCCTTCTCCCAGAGTCGCCGC 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAAAATCAGTTTCCTAGGCACTTTGATCGGACCATCTCCTCCTTCTCCCAGAGTCGCCGC 1499
Query 1506 TTTCTCCAGCCGTGGACCGAATCACTTGACACCGGTTATTCTTAAACCGGACGTGATTGC 1565
|||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct 1500 TTTCTCCAGCCGTGGACCAAACCACTTGACTCCGGTTATCCTTAAACCGGACGTGATTGC 1559
Query 1566 TCCTGGAGTCAACATTTTAGCCGGTTGGACCGGGATGGTTGGTCCTACCGATTTAGATAT 1625
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1560 TCCCGGAGTCAACATTTTAGCCGGTTGGACCGGGATGGTTGGTCCTACCGATTTGGATAT 1619
Query 1626 CGATCCAAGACGGGTTCAATTCAACATCATCTCCGGTACATCGATGTCGTGCCCACACGT 1685
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGACCCAAGACGGGTCCAATTCAACATCATCTCCGGTACATCGATGTCGTGCCCACACGT 1679
Query 1686 TAGTGGACTCGCCGCTCTCCTCCGTAAAGCTCATCCCGATTGGTCACCTGCAGCAATCAA 1745
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1680 TAGTGGACTCGCCGCTCTCCTCCGTAAAGCTCACCCCGAGTGGTCACCTGCAGCAATCAA 1739
Query 1746 ATCCGCCCTTGTAACCACCGCTTACGATGTCGAAAACTCCGGCGAACCAATCGAGGATCT 1805
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATCCGCCCTCGTAACCACCGCTTACGATGTCGAAAACTCCGGCGAACCAATCGAGGATCT 1799
Query 1806 CGCCACCGGTAAATCATCGAACTCATTCATCCACGGAGCTGGACACGTCGATCCAAACAA 1865
||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1800 CGCAACTAGTAAATCATCGAACTCATTCATCCACGGAGCTGGGCACGTCGATCCAAACAA 1859
Query 1866 AGCTTTGAATCCTGGTTTGGTTTACGACATCGAGGTCAAAGAGTACGTAGCTTTCCTCTG 1925
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1860 AGCTTTAAATCCTGGTTTGGTTTACGACATCGAAGTTAAAGAGTACGTAGCTTTCCTCTG 1919
Query 1926 CGCCGTGGGATACGAGTTTCCGGGGATTCTAGTCTTTCTTCAAGATCCAACTCTTTACGA 1985
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 1920 CGCCGTGGGATATGAGTTTCCGGGGATTCTAGTCTTCCTTCAAGATCCAACTCTTTTCAA 1979
Query 1986 CGCATGTGAAACGAGCAAGCTAAGAACCGCCGGCGATCTCAATTACCCATCTTTCTCCGT 2045
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1980 TGCCTGCGAAACGAGCAAGCTAAGAACCGCCGGAGATCTCAATTACCCATCTTTCTCAGT 2039
Query 2046 GGTTTTCGCATCGACCGGGGA-AGTTGTGAAATACAAAAGGGTTGTCAAAAACGTGGGAA 2104
|||||||| ||||||||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 2040 GGTTTTCGGATCGACCGGAGAGA-TTGTGAAATACAGAAGGGTTGTCAAAAACGTGGGAA 2098
Query 2105 GCAATGTCGACGCTGTGTACGAAGTCGGAGTTAAATCTCCGGCGAATGTTGAGATTGATG 2164
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 GCAATGTTGACGCGGTGTACGAAGTCGGAGTTAAATCTCCGGCGAATGTTGAGATTGATG 2158
Query 2165 TTTCTCCAAGCAAGCTTGCGTTCAGCAAGGAGAAGAGCGTGTTGGAGTATGAAGTCACAT 2224
| || || ||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 2159 TGTCCCCGAGCAAGCTTGCGTTCAGCAAGGAGAAGAGCGAGTTGGAGTATGAAGTGACGT 2218
Query 2225 TTAAGAGCGTTGTGCTCGGCGGAGGAGTCGGATCCGTGCCGGGTCATGAATTCGGGTCGA 2284
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 TTAAGAGCGTTGTACTCGGCGGAGGAGTCGGATCCGTGCCGGGTCATGAATTCGGGTCGA 2278
Query 2285 TCGAATGGACAGACGGTGAACACGTTGTTAAGAGTCCGGTGGCCGTCCAATGGGGTCAGG 2344
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2279 TCGAATGGACAGACGGTGAACACGTGGTGAAGAGTCCGGTGGCCGTCCAATGGGGTCAGG 2338
Query 2345 GATCAGTTCAGTCCTTCTGATTGATCATTGAAATTGGGCTCTGGTTGTATGTTTTCATTa 2404
||||||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct 2339 GATCAGTTCAGTCCTTCTGATTG------G-----G--CTCTGGTTTTATGTTTTCATTA 2385
Query 2405 aaaagaaaaaaGTCCTGTCGGGTTTGTTAAAAGGGCCATGTTGTTAATGGGCCGATCTGT 2464
|||||||||| ||| ||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 2386 AAAAGAAAAA-GTCATGTCGGGTTCGTTTAATGGGCCATGTTGTTAATGGGCCGATCTGT 2444
Query 2465 ATACTCATTAAT-GAGCCCTCACTCTTGGGTTAGACCACTATGCATGGGGTGTGAATGAG 2523
||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2445 ATACTCATTTATTGAGCCCTCACTCTTGGGTTAGACCACTATGCATGGGGTG--AATGAG 2502
Query 2524 CAGAAAATCCGATTGGCATTTGTAAACTTTTAGATTCTTGTTTGATTTCA 2573
|||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2503 CAGAAAATTCGATTGGCATTTGTAAACTTTTACTTTCTTGTTTGATTTCA 2552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97549117445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5