BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14080.1 Length=834 Score E Sequences producing significant alignments: (Bits) Value Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1 1098 0.0 > Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1 Length=770 Score = 1098 bits (594), Expect = 0.0 Identities = 718/775 (93%), Gaps = 19/775 (2%) Strand=Plus/Plus Query 71 TTCGATCGGATCTGGGTTTTATA-tttttttGAAGAACCCGTGTCCGTCTTCGATCAGT- 128 |||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||| Sbjct 1 TTCGATCGGATCTGGGTTCTATATTTTTTTTGAAGAACCCGAGTCCGTTTTCGATCAGTC 60 Query 129 TCGCGTTCAATAGCCAAATCTTATCTCTTCAGCTGGAATCTGACGAACATTATTATCATC 188 |||||||| |||||||||| ||||||||||| ||| ||||||| |||||||||||| ||| Sbjct 61 TCGCGTTCGATAGCCAAATATTATCTCTTCAACTGAAATCTGAGGAACATTATTATTATC 120 Query 189 GG-TAGTGTTCTATAGAAAGACCGAAAGTTTTCTTC-AATTT----C--A-A-AGTCAGT 238 || | ||||| |||||||||||||||| ||||| || ||||| | | | ||||||| Sbjct 121 GGTTTGTGTTTTATAGAAAGACCGAAACTTTTCATCAAATTTCAAGCGGATAGAGTCAGT 180 Query 239 GGCGATGTCGTGGGCTGGTCCTGAAGAAATTTATCTTTCAACATCACTCGCTAGTTATCT 298 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 181 GGCGATGTCTTGGGCTGGTCCTGAAGATATTTATCTTTCAACCTCACTCGCTAGTTATCT 240 Query 299 CGATAGAAAACTACTTGTGCTTCTTAGAGATGGTAGAAAGCTAATGGGAACACTCCGTTC 358 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 241 CGATAGAAAACTACTTGTGCTCCTTAGAGATGGTAGAAAGCTAATGGGAATACTCCGTTC 300 Query 359 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 360 Query 419 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 420 Query 479 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCTCCACATATGATTCGCGTCTCAGAGGC 538 ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 421 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCGCCGCATATGATTCGTGTCTCAGAGGT 480 Query 539 AGAGATTAAAAGGGCACAAAAGGTGGAGAGGGAAGCGAGTGAGCTGAGAGGAACAATGAG 598 ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 AGAGATTAAGAGGGCCCAAAAGGTGGAGAGAGAAGCGAGTGAGCTGAGAGGAACAATGAG 540 Query 599 GAAGAGAATGGAGTTTCTTGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 658 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAAGAGAATGGAGTTTCTCGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 600 Query 659 TTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 718 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 660 Query 719 GGATCGACGCAATTCTTGTGTTTCATTTTGGATGAATATGACA-A-TAAATCTGTGTACT 776 |||||||||||| |||| |||||||||| ||| ||| |||||| | ||| |||||||||| Sbjct 661 GGATCGACGCAAGTCTTATGTTTCATTTGGGAAGAACATGACAGAATAA-TCTGTGTACT 719 Query 777 TTTGTCTTTGGATCTATTTACCTTTTTAAGaaaaaaaTGTTAAGCAATTTCTTTC 831 | | || |||| |||||| |||||||||| |||||| || ||||||||||||| Sbjct 720 TCT-TC---GGATTTATTTATCTTTTTAAGAGAAAAATATTTAGCAATTTCTTTC 770 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30841439853 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5