BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G14080.1

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1        1098    0.0  


> Ahg478821 jgi|Araly1|478821|fgenesh2_kg.3__1522__AT3G14080.1
Length=770

 Score = 1098 bits (594),  Expect = 0.0
 Identities = 718/775 (93%), Gaps = 19/775 (2%)
 Strand=Plus/Plus

Query  71   TTCGATCGGATCTGGGTTTTATA-tttttttGAAGAACCCGTGTCCGTCTTCGATCAGT-  128
            |||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||| 
Sbjct  1    TTCGATCGGATCTGGGTTCTATATTTTTTTTGAAGAACCCGAGTCCGTTTTCGATCAGTC  60

Query  129  TCGCGTTCAATAGCCAAATCTTATCTCTTCAGCTGGAATCTGACGAACATTATTATCATC  188
            |||||||| |||||||||| ||||||||||| ||| ||||||| |||||||||||| |||
Sbjct  61   TCGCGTTCGATAGCCAAATATTATCTCTTCAACTGAAATCTGAGGAACATTATTATTATC  120

Query  189  GG-TAGTGTTCTATAGAAAGACCGAAAGTTTTCTTC-AATTT----C--A-A-AGTCAGT  238
            || | ||||| |||||||||||||||| ||||| || |||||    |  | | |||||||
Sbjct  121  GGTTTGTGTTTTATAGAAAGACCGAAACTTTTCATCAAATTTCAAGCGGATAGAGTCAGT  180

Query  239  GGCGATGTCGTGGGCTGGTCCTGAAGAAATTTATCTTTCAACATCACTCGCTAGTTATCT  298
            ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  181  GGCGATGTCTTGGGCTGGTCCTGAAGATATTTATCTTTCAACCTCACTCGCTAGTTATCT  240

Query  299  CGATAGAAAACTACTTGTGCTTCTTAGAGATGGTAGAAAGCTAATGGGAACACTCCGTTC  358
            ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  241  CGATAGAAAACTACTTGTGCTCCTTAGAGATGGTAGAAAGCTAATGGGAATACTCCGTTC  300

Query  359  CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA  360

Query  419  ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT  420

Query  479  TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCTCCACATATGATTCGCGTCTCAGAGGC  538
            ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| 
Sbjct  421  TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCGCCGCATATGATTCGTGTCTCAGAGGT  480

Query  539  AGAGATTAAAAGGGCACAAAAGGTGGAGAGGGAAGCGAGTGAGCTGAGAGGAACAATGAG  598
            ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  481  AGAGATTAAGAGGGCCCAAAAGGTGGAGAGAGAAGCGAGTGAGCTGAGAGGAACAATGAG  540

Query  599  GAAGAGAATGGAGTTTCTTGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC  658
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GAAGAGAATGGAGTTTCTCGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC  600

Query  659  TTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG  718
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  CTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG  660

Query  719  GGATCGACGCAATTCTTGTGTTTCATTTTGGATGAATATGACA-A-TAAATCTGTGTACT  776
            |||||||||||| |||| |||||||||| ||| ||| |||||| | ||| ||||||||||
Sbjct  661  GGATCGACGCAAGTCTTATGTTTCATTTGGGAAGAACATGACAGAATAA-TCTGTGTACT  719

Query  777  TTTGTCTTTGGATCTATTTACCTTTTTAAGaaaaaaaTGTTAAGCAATTTCTTTC  831
            | | ||   |||| |||||| |||||||||| |||||| || |||||||||||||
Sbjct  720  TCT-TC---GGATTTATTTATCTTTTTAAGAGAAAAATATTTAGCAATTTCTTTC  770



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30841439853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5